IslandPath Analysis: Burkholderia phymatum STM815



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.22   STD DEV: 3.39
Burkholderia phymatum STM815 chromosome 1, complete sequence - 1..3479187
3072 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 61.91	0	362..1918	+	518	186474774	-	Bphy_0001	-	chromosomal replication initiator protein DnaA
2	 59.51	-1	2175..3278	+	367	186474775	-	Bphy_0002	-	DNA polymerase III, beta subunit
3	 60.15	0	3392..5863	+	823	186474776	-	Bphy_0003	-	DNA gyrase, B subunit
4	 56.74	-1	5956..6237	-	93	186474777	-	Bphy_0004	-	hypothetical protein
5	 60.61	0	7331..8734	+	467	186474778	-	Bphy_0006	-	ethanolamine transproter
6	 60.79	0	8816..10210	+	464	186474779	-	Bphy_0007	-	ethanolamine ammonia lyase large subunit
7	 62.52	0	10207..11001	+	264	186474780	-	Bphy_0008	-	ethanolamine ammonia-lyase
8	 58.02	-1	11042..11434	-	130	186474781	-	Bphy_0009	-	hypothetical protein
9	 60.68	0	11514..13034	-	506	186474782	-	Bphy_0010	-	aldehyde dehydrogenase
10	 64.50	0	13381..14397	+	338	186474783	-	Bphy_0011	-	AraC family transcriptional regulator
11	 57.53	-1	14834..15019	+	61	186474784	-	Bphy_0012	-	hypothetical protein
12	 64.37	0	15034..16425	+	463	186474785	-	Bphy_0013	-	DEAD/DEAH box helicase domain-containing protein
13	 60.87	0	16752..17906	+	384	186474786	-	Bphy_0014	-	aminotransferase class I and II
14	 67.14	+1	17921..18763	+	280	186474787	-	Bphy_0015	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
15	 62.25	0	18797..19588	+	263	186474788	-	Bphy_0016	-	extracellular solute-binding protein
16	 67.34	+1	19749..20486	+	245	186474789	-	Bphy_0017	-	putative transmembrane anti-sigma factor
17	 61.27	0	20605..21123	+	172	186474790	-	Bphy_0018	-	ECF subfamily RNA polymerase sigma-24 factor
18	 62.83	0	21120..21953	+	277	186474791	-	Bphy_0019	-	putative transmembrane anti-sigma factor
19	 58.89	-1	22125..22394	+	89	186474792	-	Bphy_0020	-	hypothetical protein
20	 64.37	0	23411..25324	+	637	186474793	-	Bphy_0022	-	type VI secretion protein
21	 63.02	0	25363..28020	+	885	186474794	-	Bphy_0023	-	type VI secretion system Vgr family protein
22	 44.34	-2	28054..28971	+	305	186474795	-	Bphy_0024	-	hypothetical protein
23	 60.28	0	29288..29647	+	119	186474796	-	Bphy_0025	-	hypothetical protein
24	 63.43	0	29667..30656	+	329	186474797	-	Bphy_0026	-	hypothetical protein
25	 62.72	0	31178..31582	+	134	186474798	-	Bphy_0027	-	thioesterase superfamily protein
26	 63.90	0	31634..32500	+	288	186474799	-	Bphy_0028	-	patatin
27	 62.82	0	32555..33568	-	337	186474800	-	Bphy_0029	-	D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding
28	 64.35	0	33920..35776	+	618	186474801	-	Bphy_0030	-	phosphoenolpyruvate carboxykinase (GTP)
29	 62.81	0	36108..37196	+	362	186474802	-	Bphy_0031	-	LysR family transcriptional regulator
30	 61.02	0	37341..40067	-	908	186474803	-	Bphy_0032	-	DNA topoisomerase III
31	 60.85	0	40305..40682	-	125	186474804	-	Bphy_0033	-	thioredoxin domain-containing protein
32	 67.52	+1	40737..41906	-	389	186474805	-	Bphy_0034	-	DNA protecting protein DprA
33	 58.93	-1	42162..42665	+	167	186474806	-	Bphy_0035	-	peptide deformylase
34	 68.29	+1	42691..43674	+	327	186474807	-	Bphy_0036	-	methionyl-tRNA formyltransferase
35	 63.26	0	43774..44418	+	214	186474808	-	Bphy_0037	-	lysine exporter protein LysE/YggA
36	 63.99	0	44522..45379	+	285	186474809	-	Bphy_0038	-	peptidase M48 Ste24p
37	 65.93	0	45662..47023	+	453	186474810	-	Bphy_0039	-	sun protein
38	 59.22	-1	47020..47610	+	196	186474811	-	Bphy_0040	-	hypothetical protein
39	 62.56	0	47612..50023	+	803	186474812	-	Bphy_0041	-	integral membrane sensor signal transduction histidine kinase
40	 64.06	0	50024..50713	+	229	186474813	-	Bphy_0042	-	two component Fis family transcriptional regulator
41	 63.80	0	51253..51984	+	243	186474814	-	Bphy_0043	-	exsB protein
42	 61.14	0	52054..52686	+	210	186474815	-	Bphy_0044	-	radical SAM domain-containing protein
43	 59.51	-1	52693..53139	+	148	186474816	-	Bphy_0045	-	queuosine biosynthesis protein QueD
44	 63.60	0	53327..54109	+	260	186474817	-	Bphy_0046	-	2-dehydro-3-deoxyglucarate aldolase
45	 62.87	0	54106..54816	+	236	186474818	-	Bphy_0047	-	Sel1 domain-containing protein
46	 59.97	0	54875..56023	-	382	186474819	-	Bphy_0048	-	rod shape-determining protein RodA
47	 65.50	0	56034..58436	-	800	186474820	-	Bphy_0049	-	penicillin-binding protein 2
48	 62.18	0	58558..59070	-	170	186474821	-	Bphy_0050	-	rod shape-determining protein MreD
49	 65.04	0	59067..60170	-	367	186474822	-	Bphy_0051	-	rod shape-determining protein MreC
50	 62.16	0	60289..61332	-	347	186474823	-	Bphy_0052	-	cell shape determining protein MreB
51	 60.67	0	61712..62011	+	99	186474824	-	Bphy_0053	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
52	 65.93	0	62165..63658	+	497	186474825	-	Bphy_0054	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
53	 61.72	0	63660..65135	+	491	186474826	-	Bphy_0055	-	glutamyl-tRNA(Gln) amidotransferase, B subunit
54	 60.93	0	65270..66106	+	278	186474827	-	Bphy_0056	-	hypothetical protein
55	 59.49	-1	66149..66928	+	259	186474828	-	Bphy_0057	-	exodeoxyribonuclease III Xth
56	 65.02	0	66953..68167	-	404	186474829	-	Bphy_0058	-	peptidase M48 Ste24p
57	 61.86	0	68167..69561	-	464	186474830	-	Bphy_0059	-	major facilitator transporter
58	 59.61	-1	69575..70183	-	202	186474831	-	Bphy_0060	-	methionine biosynthesis protein MetW
59	 61.69	0	70180..71325	-	381	186474832	-	Bphy_0061	-	homoserine O-acetyltransferase
60	 64.52	0	71569..72267	-	232	186474833	-	Bphy_0062	-	TetR family transcriptional regulator
61	 65.61	0	72304..73062	-	252	186474834	-	Bphy_0063	-	pyrimidine 5'-nucleotidase
62	 62.44	0	73262..74161	-	299	186474835	-	Bphy_0064	-	acetylglutamate kinase
63	 64.13	0	74476..74751	+	91	186474836	-	Bphy_0065	-	hypothetical protein
64	 63.25	0	74789..76426	-	545	186474837	-	Bphy_0066	-	TPR repeat-containing protein
65	 67.28	+1	76529..77833	+	434	186474838	-	Bphy_0067	-	integral membrane sensor signal transduction histidine kinase
66	 62.98	0	77830..78372	+	180	186474839	-	Bphy_0068	-	two component Fis family transcriptional regulator
67	 60.94	0	78455..79798	-	447	186474840	-	Bphy_0069	-	heat shock protein HslVU, ATPase subunit HslU
68	 63.50	0	79808..80344	-	178	186474841	-	Bphy_0070	-	20S proteasome A and B subunits
69	 62.14	0	80718..81137	-	139	186474842	-	Bphy_0071	-	TraR/DksA family transcriptional regulator
70	 58.22	-1	81752..82840	-	362	186474843	-	Bphy_0072	-	cobalamin synthesis protein P47K
71	 65.42	0	83006..84208	-	400	186474844	-	Bphy_0073	-	PUA domain-containing protein
72	 68.51	+1	84294..85217	-	307	186474845	-	Bphy_0074	-	tyrosine recombinase XerC
73	 67.36	+1	85228..85947	-	239	186474846	-	Bphy_0075	-	hypothetical protein
74	 64.58	0	86034..86894	-	286	186474847	-	Bphy_0076	-	diaminopimelate epimerase
75	 63.95	0	86949..87833	-	294	186474848	-	Bphy_0077	-	lipid A biosynthesis acyltransferase
76	 63.64	0	88106..89293	+	395	186474849	-	Bphy_0078	-	methionine adenosyltransferase
77	 72.73	+2	89507..89803	-	98	186474850	-	Bphy_0079	-	hypothetical protein
78	 63.12	0	90294..91055	+	253	186474851	-	Bphy_0080	-	phytanoyl-CoA dioxygenase
79	 61.69	0	91100..91300	-	66	186474852	-	Bphy_0081	-	hypothetical protein
80	 60.92	0	91610..92653	+	347	186474853	-	Bphy_0082	-	aldo/keto reductase
81	 57.92	-1	92765..92947	-	60	186474854	-	Bphy_0083	-	hypothetical protein
82	 67.85	+1	93217..94488	-	423	186474855	-	Bphy_0084	-	major facilitator transporter
83	 64.86	0	94454..95173	-	239	186474856	-	Bphy_0085	-	hypothetical protein
84	 60.09	0	95551..95763	+	70	186474857	-	Bphy_0086	-	hypothetical protein
85	 64.13	0	95889..96911	+	340	186474858	-	Bphy_0087	-	aminoglycoside phosphotransferase
86	 62.42	0	97214..97378	+	54	186474859	-	Bphy_0088	-	hypothetical protein
87	 64.82	0	97489..98517	-	342	186474860	-	Bphy_0089	-	hypothetical protein
88	 64.95	0	98490..99071	-	193	186474861	-	Bphy_0090	-	carbon monoxide dehydrogenase subunit G
89	 67.23	+1	99062..100297	-	411	186474862	-	Bphy_0091	-	VWA containing CoxE family protein
90	 66.11	0	100303..101193	-	296	186474863	-	Bphy_0092	-	ATPase
91	 66.42	0	101327..102124	-	265	186474864	-	Bphy_0093	-	carbon-monoxide dehydrogenase (acceptor)
92	 63.82	0	102137..104524	-	795	186474865	-	Bphy_0094	-	aldehyde oxidase and xanthine dehydrogenase molybdopterin binding
93	 62.08	0	104536..105036	-	166	186474866	-	Bphy_0095	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
94	 62.31	0	105421..106821	-	466	186474867	-	Bphy_0096	-	amino acid permease-associated region
95	 61.80	0	106959..107615	-	218	186474868	-	Bphy_0097	-	two component LuxR family transcriptional regulator
96	 69.20	+1	107677..108543	-	288	186474869	-	Bphy_0098	-	histidine kinase
97	 59.92	0	109090..109860	-	256	186474870	-	Bphy_0099	-	oxidoreductase FAD-binding subunit
98	 66.67	+1	110381..111022	-	213	186474871	-	Bphy_0100	-	lysine exporter protein LysE/YggA
99	 63.66	0	111967..112764	-	265	186474872	-	Bphy_0102	-	endonuclease/exonuclease/phosphatase
100	 67.26	+1	112793..113299	-	168	186474873	-	Bphy_0103	-	hypothetical protein
63.22	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.