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IslandPath Analysis: Brucella abortus bv. 1 str. 9-941

Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).

A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 57.12 STD DEV: 4.21

Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence - 1..2124241
2030 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 60.23	0	784..2274	+	496	62288992	dnaA	BruAb1_0001	-	chromosomal replication initiation protein
2	 58.71	0	2503..3696	+	397	62288993	dnaN	BruAb1_0002	-	DNA polymerase III subunit beta
3	 61.39	+1	3878..5032	+	384	62288994	recF	BruAb1_0003	-	recombination protein F
4	 61.43	+1	5070..5852	+	260	62288995	moeB	BruAb1_0004	-	molybdopterin biosynthesis protein MoeB
5	 57.37	0	5869..6825	-	318	62288996	-	BruAb1_0005	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
6	 58.92	0	6822..8474	-	550	62288997	-	BruAb1_0006	-	ABC transporter, ATP-binding protein
7	 57.89	0	8471..9610	-	379	62288998	-	BruAb1_0007	-	ABC transporter, permease protein
8	 55.83	0	9610..10707	-	365	62288999	-	BruAb1_0008	-	ABC transporter, permease protein
9	 57.20	0	10819..12666	-	615	62289000	-	BruAb1_0009	-	ABC transporter periplasmic substrate-binding protein
10	 56.07	0	12680..14548	-	622	62289001	-	BruAb1_0010	-	ABC transporter periplasmic substrate-binding protein
11	 53.40	0	14779..15102	-	107	62289002	-	BruAb1_0011	-	hypothetical protein
12	 48.26	-2	15148..15348	-	66	62289003	-	BruAb1_0012	-	hypothetical protein
13	 35.90	-2	15388..15738	-	116	62289004	-	BruAb1_0013	-	hypothetical protein
14	 52.74	-1	17243..17443	+	66	62289005	-	BruAb1_0015	-	hypothetical protein
15	 61.51	+1	17440..18234	-	264	62289006	-	BruAb1_0016	-	enoyl-CoA hydratase
16	 59.38	0	18231..19094	-	287	62289007	mvaB	BruAb1_0017	-	hydroxymethylglutaryl-CoA lyase
17	 62.07	+1	19087..21108	-	673	62289008	-	BruAb1_0018	-	biotin carboxylase
18	 62.00	+1	21120..22727	-	535	62289009	-	BruAb1_0019	-	carboxyl transferase family protein
19	 58.78	0	22727..23905	-	392	62289010	ivd	BruAb1_0020	-	Ivd, isovaleryl-CoA dehydrogenase
20	 53.33	0	26223..26657	-	144	62289011	-	BruAb1_0022	-	hypothetical protein
21	 54.90	0	26834..27955	-	373	62289012	-	BruAb1_0023	-	hypothetical protein
22	 55.99	0	28478..28861	-	127	62289013	-	BruAb1_0024	-	hypothetical protein
23	 61.12	0	29246..30598	+	450	62289014	aroA	BruAb1_0025	-	3-phosphoshikimate 1-carboxyvinyltransferase
24	 62.73	+1	30595..31254	+	219	62289015	cmk	BruAb1_0026	-	cytidylate kinase
25	 57.91	0	31470..33170	+	566	62289016	rpsA	BruAb1_0027	-	30S ribosomal protein S1
26	 59.74	0	33588..34598	-	336	62289017	-	BruAb1_0028	-	hypothetical protein
27	 57.33	0	34714..35613	+	299	62289018	-	BruAb1_0029	-	LysR family transcriptional regulator
28	 55.22	0	36218..37501	-	427	62289019	-	BruAb1_0031	-	transglycosylase
29	 60.73	0	37517..38122	-	201	62289020	recR	BruAb1_0032	-	recombination protein RecR
30	 59.88	0	38253..38576	-	107	62289021	-	BruAb1_0033	-	hypothetical protein
31	 61.91	+1	38601..40409	-	602	62289022	dnaX	BruAb1_0034	-	DNA polymerase III subunits gamma and tau
32	 61.48	+1	40691..41095	+	134	62289023	-	BruAb1_0035	-	hypothetical protein
33	 60.02	0	41124..42071	+	315	62289024	-	BruAb1_0036	-	MutT/nudix family protein
34	 58.80	0	42072..42935	-	287	62289025	pheA	BruAb1_0037	-	prephenate dehydratase
35	 60.58	0	43024..43779	-	251	62289026	kdsB	BruAb1_0038	-	3-deoxy-manno-octulosonate cytidylyltransferase
36	 56.81	0	44157..44765	+	202	62289027	-	BruAb1_0039	-	cytochrome c, membrane-bound
37	 61.49	+1	44810..45775	-	321	62289028	-	BruAb1_0040	-	hypothetical protein
38	 50.49	-1	45831..46139	+	102	62289029	-	BruAb1_0041	-	hypothetical protein
39	 56.02	0	46314..47327	+	337	62289030	cyoA	BruAb1_0042	-	CyoA, ubiquinol oxidase, subunit II
40	 57.94	0	49389..50018	+	209	62289031	-	BruAb1_0044	-	ubiquinol oxidase subunit III
41	 55.46	0	50018..50383	+	121	62289032	qoxD	BruAb1_0045	-	QoxD, ubiquinol oxidase subunit IV
42	 50.18	-1	50380..50658	-	92	62289033	-	BruAb1_0046	-	hypothetical protein
43	 59.17	0	51831..53750	+	639	62289034	-	BruAb1_0048	-	hypothetical protein
44	 59.79	0	53747..58486	+	1579	62289035	-	BruAb1_0049	-	hypothetical protein
45	 57.44	0	58631..59356	+	241	62289036	-	BruAb1_0050	-	lipoprotein
46	 55.56	0	59407..59622	-	71	62289037	-	BruAb1_0051	-	hypothetical protein
47	 59.72	0	59692..60195	-	167	62289038	-	BruAb1_0052	-	hypothetical protein
48	 61.35	+1	60533..60739	-	68	62289039	-	BruAb1_0053	-	hypothetical protein
49	 58.61	0	60750..61754	-	334	62289040	-	BruAb1_0054	-	hypothetical protein
50	 59.65	0	61889..62287	-	132	62289041	-	BruAb1_0055	-	hypothetical protein
51	 58.33	0	62508..62903	-	131	62289042	-	BruAb1_0056	-	glyoxalase family protein
52	 62.20	+1	63100..64263	+	387	62289043	-	BruAb1_0057	-	mrp-related protein
53	 57.84	0	64492..66123	-	543	62289044	pgm	BruAb1_0058	-	phosphoglucomutase
54	 44.62	-2	66179..66364	-	61	62289045	-	BruAb1_0059	-	hypothetical protein
55	 59.73	0	66339..67232	-	297	62289046	-	BruAb1_0060	-	LysR family transcriptional regulator
56	 54.65	0	67357..68280	+	307	62289047	-	BruAb1_0061	-	dienelactone hydrolase domain-containing protein
57	 59.36	0	68395..69051	+	218	62289048	frcK	BruAb1_0062	-	putative fructose transport system kinase
58	 58.84	0	69151..69840	+	229	62289049	-	BruAb1_0063	-	fumarylacetoacetate hydrolase family protein
59	 52.60	-1	69860..70051	+	63	62289050	-	BruAb1_0064	-	hypothetical protein
60	 46.76	-2	70113..70328	+	71	62289051	-	BruAb1_0065	-	hypothetical protein
61	 51.85	-1	70494..70682	+	62	62289052	-	BruAb1_0066	-	hypothetical protein
62	 62.38	+1	70697..71560	+	287	62289053	-	BruAb1_0067	-	transglycosylase SLT domain-containing protein
63	 57.84	0	71742..72398	+	218	62289054	-	BruAb1_0068	-	hemolysin III family channel protein
64	 60.39	0	72539..75772	-	1077	62289055	dnaE2	BruAb1_0069	-	error-prone DNA polymerase
65	 65.02	+1	75772..77229	-	485	62289056	-	BruAb1_0070	-	hypothetical protein
66	 64.00	+1	77249..78112	-	287	62289057	-	BruAb1_0071	-	hypothetical protein
67	 54.03	0	80281..82551	+	756	62289058	-	BruAb1_0072	-	outer membrane protein
68	 53.92	0	82760..83308	+	182	62289059	-	BruAb1_0073	-	hypothetical protein
69	 58.23	0	83387..84607	-	406	62289060	argG	BruAb1_0074	-	argininosuccinate synthase
70	 56.40	0	84704..85453	+	249	62289061	-	BruAb1_0075	-	amino acid efflux LysE family protein
71	 57.94	0	85457..85960	-	167	62289062	-	BruAb1_0076	-	hypothetical protein
72	 59.14	0	85994..87229	-	411	62289063	-	BruAb1_0077	-	hypothetical protein
73	 57.54	0	87489..87992	-	167	62289064	-	BruAb1_0078	-	hypothetical protein
74	 63.54	+1	88432..88815	-	127	62289065	-	BruAb1_0079	-	hypothetical protein
75	 54.76	0	88903..89196	-	97	62289066	phhB	BruAb1_0080	-	pterin-4-alpha-carbinolamine dehydratase
76	 61.25	0	89936..90526	-	196	62289067	-	BruAb1_0082	-	hypothetical protein
77	 56.06	0	90707..91432	-	241	62289068	-	BruAb1_0083	-	lipase/acylhydrolase domain-containing protein
78	 61.87	+1	91579..92307	+	242	62289069	-	BruAb1_0084	-	ABC transporter, ATP-binding protein
79	 61.73	+1	92304..94853	+	849	62289070	-	BruAb1_0085	-	ABC transporter, permease protein
80	 57.86	0	95087..95824	+	245	62289071	-	BruAb1_0086	-	hypothetical protein
81	 54.73	0	96497..96898	-	133	62289072	-	BruAb1_0088	-	hypothetical protein
82	 57.14	0	97448..98182	-	244	62289073	-	BruAb1_0089	-	hypothetical protein
83	 60.27	0	98459..101146	-	895	62289074	acnA	BruAb1_0090	-	aconitate hydratase
84	 58.33	0	101490..102137	+	215	62289075	ccmA	BruAb1_0091	-	cytochrome c biogenesis protein CcmA
85	 62.31	+1	102137..102802	+	221	62289076	ccmB	BruAb1_0092	-	CcmB, heme exporter protein
86	 58.40	0	102860..103645	+	261	62289077	ccmC	BruAb1_0093	-	CcmC, heme exporter protein
87	 56.90	0	103642..103815	+	57	62289078	-	BruAb1_0094	-	heme exporter protein D
88	 59.31	0	103812..104423	+	203	62289079	cycY	BruAb1_0095	-	thiol:disulfide interchange protein CycY
89	 61.00	0	104672..106507	-	611	62289080	ilvD	BruAb1_0096	-	dihydroxy-acid dehydratase
90	 54.35	0	106688..106825	+	45	62289081	-	BruAb1_0097	-	hypothetical protein
91	 61.66	+1	106906..107364	-	152	62289082	-	BruAb1_0098	-	hypothetical protein
92	 59.79	0	107364..107741	-	125	62289083	-	BruAb1_0099	-	response regulator
93	 49.37	-1	107916..108152	-	78	62289084	-	BruAb1_0100	-	transcriptional regulator
94	 56.79	0	108805..109209	+	134	62289085	-	BruAb1_0101	-	hypothetical protein
95	 57.02	0	109295..109999	-	234	62289086	-	BruAb1_0102	-	hypothetical protein
96	 53.97	0	110071..110889	+	272	62289087	-	BruAb1_0103	-	hypothetical protein
97	 57.73	0	111168..112196	+	342	62289088	-	BruAb1_0104	-	sulfate ABC transporter, sulfate-binding protein
98	 59.40	0	112291..113157	+	288	62289089	-	BruAb1_0105	-	sulfate ABC transporter, permease protein
99	 59.05	0	113147..114013	+	288	62289090	cysW-1	BruAb1_0106	-	CysW-1, sulfate ABC transporter, permease protein
100	 61.39	+1	114111..115190	+	359	62289091	-	BruAb1_0107	-	sulfate ABC transporter ATP-binding protein
57.12	MEAN

4.21	STD DEV

Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.