IslandPath Analysis: Candidatus Carsonella ruddii PV



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 14.94   STD DEV: 4.68
Candidatus Carsonella ruddii PV, complete genome - 1..159662
182 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 15.34	0	1..1317	+	438	116334903	-	CRP_001	-	tRNA modification GTPase
2	 18.10	0	1314..2816	+	500	116334904	-	CRP_002	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
3	 11.98	0	2785..3477	+	230	116334905	-	CRP_003	-	F0F1-type ATP synthase A subunit
4	 23.93	+1	3486..3719	+	77	116334906	-	CRP_004	-	F0F1-type ATP synthase C subunit
5	  9.65	-1	3721..4176	+	151	116334907	-	CRP_005	-	putative F0F1-type ATP synthase B subunit
6	  6.45	-1	4169..4354	+	61	116334908	-	CRP_006	-	hypothetical protein
7	 24.07	+1	4344..5789	+	481	116334909	-	CRP_007	-	F0F1-type ATP synthase alpha subunit
8	 12.91	0	5786..6544	+	252	116334910	-	CRP_008	-	F0F1-type ATP synthase gamma subunit
9	 25.82	+2	6541..7884	+	447	116334911	-	CRP_009	-	F0F1 ATP synthase subunit beta
10	 11.11	0	7881..8123	+	80	116334912	-	CRP_010	-	hypothetical protein
11	 13.06	0	8110..8997	+	295	116334913	-	CRP_011	-	ornithine carbamoyltransferase
12	 14.61	0	9084..9521	-	145	116334914	-	CRP_012	-	3-dehydroquinate dehydratase
13	 17.63	0	9497..11407	-	636	116334915	-	CRP_013	-	transketolase
14	 10.97	0	11394..13061	+	555	116334916	-	CRP_014	-	hypothetical protein
15	 13.06	0	13048..13767	+	239	116334917	-	CRP_015	-	5,10-methylenetetrahydrofolate reductase
16	  6.52	-1	13755..13892	-	45	116334918	-	CRP_016	-	hypothetical protein
17	 15.42	0	14072..15115	-	347	116334919	-	CRP_017	-	succinyl-diaminopimelate desuccinylase
18	 17.91	0	15115..16080	-	321	116334920	-	CRP_018	-	tetrahydrodipicolinate N-succinyltransferase
19	 14.21	0	16074..16784	-	236	116334921	-	CRP_019	-	methionine aminopeptidase
20	 13.52	0	16770..17420	+	216	116334922	-	CRP_020	-	ribosomal protein S2
21	 11.16	0	17414..18040	+	208	116334923	-	CRP_021	-	hypothetical protein
22	 12.05	0	18033..18563	+	176	116334924	-	CRP_022	-	hypothetical protein
23	 17.30	0	18556..21897	+	1113	116334925	-	CRP_023	-	DNA polymerase III alpha subunit
24	 11.66	0	21894..22382	+	162	116334926	-	CRP_024	-	hypothetical protein
25	 14.98	0	22428..24530	+	700	116334927	-	CRP_025	-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase
26	 13.76	0	24669..24857	+	62	116334928	-	CRP_026	-	ribosomal protein L31
27	 10.46	0	24835..25293	+	152	116334929	-	CRP_027	-	hypothetical protein
28	 14.42	0	25274..26320	+	348	116334930	-	CRP_028	-	3-dehydroquinate synthase
29	 23.33	+1	26274..27923	+	549	116334931	-	CRP_029	-	dihydroxy-acid dehydratase
30	 13.15	0	27916..29010	+	364	116334932	-	CRP_030	-	hypothetical protein
31	 19.30	0	29000..30196	+	398	116334933	-	CRP_031	-	serine hydroxymethyltransferase
32	 19.04	0	30317..31666	+	449	116334934	-	CRP_032	-	putative ABC transporter permease component
33	 13.36	0	31663..32328	+	221	116334935	-	CRP_033	-	putative ABC transporter ATP-binding component
34	  8.09	-1	32319..33146	+	275	116334936	-	CRP_034	-	hypothetical protein
35	 11.86	0	33143..34297	+	384	116334937	-	CRP_035	-	selenocysteine lyase
36	 11.82	0	34259..35155	-	298	116334938	-	CRP_036	-	putative tRNA(5-methylaminomethyl-2- thiouridylate) methyltransferase
37	 22.22	+1	35155..35379	-	74	116334939	-	CRP_037	-	translation initiation factor IF-1
38	 13.80	0	35618..35914	-	98	116334940	-	CRP_038	-	putative thioredoxin
39	 14.36	0	35911..37212	-	433	116334941	-	CRP_039	-	6-phosphogluconate dehydrogenase
40	 10.24	-1	37719..38177	-	152	116334942	-	CRP_040	-	hypothetical protein
41	 18.99	0	38340..39029	+	229	116334943	-	CRP_041	-	putative peptide chain release factor A
42	 11.84	0	39033..40130	-	365	116334944	-	CRP_042	-	aspartyl/glutamyl-tRNA amidotransferase B subunit
43	 17.11	0	40117..41478	-	453	116334945	-	CRP_043	-	aspartyl/glutamyl-tRNA amidotransferase A subunit
44	  7.96	-1	41475..41675	-	66	116334946	-	CRP_044	-	hypothetical protein
45	 10.54	0	41767..42060	+	97	116334947	-	CRP_045	-	ribosomal protein L13
46	 15.22	0	42057..42437	+	126	116334948	-	CRP_046	-	ribosomal protein S9
47	 10.31	0	42558..43139	+	193	116334949	-	CRP_047	-	hypothetical protein
48	  9.75	-1	43129..43887	+	252	116334950	-	CRP_048	-	hypothetical protein
49	 13.81	0	43884..45107	+	407	116334951	-	CRP_049	-	3-phosphoshikimate 1-carboxyvinyltransferase
50	 10.12	-1	45091..46197	+	368	116334952	-	CRP_050	-	putative ribosomal protein S1
51	 28.69	+2	46194..47786	-	530	116334953	-	CRP_051	-	chaperonin GroEL
52	 17.01	0	47776..48069	-	97	116334954	-	CRP_052	-	chaperonin GroES
53	 13.78	0	48573..48971	+	132	116334955	-	CRP_053	-	hypothetical protein
54	  9.96	-1	48961..49422	+	153	116334956	-	CRP_054	-	hypothetical protein
55	 17.10	0	49416..50561	+	381	116334957	-	CRP_055	-	putative replicative DNA helicase
56	 10.35	0	50533..51102	+	189	116334958	-	CRP_056	-	hypothetical protein
57	 11.59	0	51080..51217	+	45	116334959	-	CRP_057	-	hypothetical protein
58	 15.37	0	51214..51987	+	257	116334960	-	CRP_058	-	putative DNA primase
59	 10.80	0	51984..52946	+	320	116334961	-	CRP_059	-	putative RNA polymerase sigma factor rpoD
60	 12.82	0	53542..53892	-	116	116334962	-	CRP_060	-	hypothetical protein
61	 17.32	0	53898..54353	+	151	116334963	-	CRP_061	-	chaperone protein GrpE
62	 26.70	+2	54408..56216	+	602	116334964	-	CRP_062	-	chaperone protein DnaK
63	 10.16	-1	56273..56587	+	104	116334965	-	CRP_063	-	hypothetical protein
64	 13.73	0	56580..57278	+	232	116334966	-	CRP_064	-	dihydrodipicolinate reductase
65	 16.00	0	57272..57721	+	149	116334967	-	CRP_065	-	truncated carbamoylphosphate synthase small subunit
66	 15.00	0	57714..58253	+	179	116334968	-	CRP_066	-	truncated carbamoylphosphate synthase small subunitt
67	 18.29	0	58246..61143	+	965	116334969	-	CRP_067	-	carbamoylphosphate synthase large subunit
68	 15.64	0	61235..62845	+	536	116334970	-	CRP_068	-	putative translation initiation factor IF-2
69	 11.62	0	62817..63014	+	65	116334971	-	CRP_069	-	hypothetical protein
70	 11.15	0	63011..63988	+	325	116334972	-	CRP_070	-	tyrosyl-tRNA synthetase
71	 10.88	0	63948..65123	+	391	116334973	-	CRP_071	-	glutaminyl-tRNA synthetase
72	 26.84	+2	65412..65996	+	194	116334974	-	CRP_072	-	ATP-dependent Clp protease proteolytic subunit
73	 20.22	+1	65971..67038	+	355	116334975	clpX	CRP_073	-	ATP-dependent protease ATP-binding subunit
74	 12.23	0	67801..68127	+	108	116334976	-	CRP_074	-	hypothetical protein
75	 12.44	0	68124..69401	+	425	116334977	-	CRP_075	-	aspartyl-tRNA synthetase
76	 13.79	0	69553..70074	+	173	116334978	-	CRP_076	-	ribulose-phosphate 3-epimerase
77	 20.23	+1	70076..73120	-	1014	116334979	-	CRP_077	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
78	 17.11	0	73136..74479	+	447	116334980	-	CRP_078	-	2-isopropylmalate synthase
79	 22.06	+1	74472..75509	+	345	116334981	-	CRP_079	-	chorismate synthase
80	 20.42	+1	75502..76872	+	456	116334982	-	CRP_080	-	3-isopropylmalate dehydratase large subunit
81	 12.17	0	76856..77422	+	188	116334983	-	CRP_081	-	3-isopropylmalate dehydratase small subunit
82	 20.48	+1	77419..78468	+	349	116334984	-	CRP_082	-	3-isopropylmalate dehydrogenase
83	 19.30	0	78461..79486	+	341	116334985	-	CRP_083	-	aspartate-semialdehyde dehydrogenase
84	 13.45	0	79497..80507	+	336	116334986	-	CRP_084	-	seryl-tRNA synthetase
85	 11.29	0	80599..80970	+	123	116334987	-	CRP_085	-	hypothetical protein
86	 10.43	0	81029..81565	-	178	116334988	-	CRP_086	-	hypothetical protein
87	 19.78	+1	81562..82107	-	181	116334989	-	CRP_087	-	DNA polymerase III epsilon subunit
88	  8.37	-1	82104..83321	-	405	116334990	-	CRP_088	-	hypothetical protein
89	 14.39	0	83314..83577	-	87	116334991	-	CRP_089	-	putative phenylalanyl-tRNA synthetase alpha subunit
90	 14.71	0	83979..84284	-	101	116334992	-	CRP_090	-	ribosomal protein L20
91	 14.86	0	84402..84926	-	174	116334993	-	CRP_091	-	translation initiation factor IF-3
92	 13.79	0	84926..85534	-	202	116334994	-	CRP_092	-	superoxide dismutase
93	  9.70	-1	85571..86044	-	157	116334995	-	CRP_093	-	hypothetical protein
94	 17.27	0	86041..86949	-	302	116334996	-	CRP_094	-	phospho-2-dehydro-3-deoxyheptonate aldolase
95	 15.91	0	86937..87068	-	43	116334997	-	CRP_095	-	hypothetical protein
96	 12.49	0	87069..88349	+	426	116334998	-	CRP_096	-	hypothetical protein
97	  8.50	-1	88324..88617	+	97	116334999	-	CRP_097	-	hypothetical protein
98	 14.38	0	88604..90502	+	632	116335000	-	CRP_098	-	leucyl-tRNA synthetase
99	 20.24	+1	90492..91316	-	274	116335001	-	CRP_099	-	succinyl-CoA synthetase alpha subunit
100	 14.16	0	91313..92350	-	345	116335002	-	CRP_100	-	succinyl-CoA synthetase beta subunit
14.94	MEAN

4.68	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.