IslandPath Analysis: Heliobacterium modesticaldum Ice1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 56.69   STD DEV: 6.24
Heliobacterium modesticaldum Ice1, complete genome - 1..3075407
3000 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 55.56	0	437..1408	-	323	167628138	-	HM1_0001	-	hypothetical protein
2	 39.46	-2	1421..1567	+	48	167628139	-	HM1_0002	-	hypothetical protein
3	 45.00	-1	1583..1762	-	59	167628140	-	HM1_0003	-	hypothetical protein
4	 55.78	0	1759..2199	-	146	167628141	-	HM1_0004	-	hypothetical protein
5	 58.15	0	2251..2943	-	230	167628142	-	HM1_0005	-	Crp/FNR family transcriptional regulator
6	 63.67	+1	3054..3986	+	310	167628143	-	HM1_0006	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
7	 49.57	-1	4112..4228	-	38	167628144	-	HM1_0007	-	hypothetical protein
8	 55.50	0	4429..5628	-	399	167628145	-	HM1_0008	-	toxic ion resistance protein
9	 48.89	-1	5625..6254	-	209	167628146	-	HM1_0009	-	hypothetical protein
10	 50.56	0	6338..6517	-	59	167628147	-	HM1_0010	-	hypothetical protein
11	 58.46	0	6476..7291	+	271	167628148	-	HM1_0011	-	hypothetical protein
12	 48.06	-1	7433..7561	+	42	167628149	-	HM1_0012	-	hypothetical protein
13	 52.13	0	7836..9458	+	540	167628150	-	HM1_0013	-	IS4 family transposase
14	 51.21	0	9497..9826	-	109	167628151	-	HM1_0014	-	hypothetical protein
15	 51.09	0	10109..11989	-	626	167628152	htpG	HM1_0015	-	heat shock protein 90
16	 34.96	-2	12387..12509	-	40	167628153	-	HM1_0016	-	hypothetical protein
17	 49.70	-1	12861..14204	-	447	167628154	-	HM1_0017	-	IS4 family transposase
18	 39.34	-2	14437..14802	+	121	167628155	-	HM1_0018	-	hypothetical protein
19	 44.65	-1	14976..15302	-	108	167628156	-	HM1_0019	-	transposase
20	 47.18	-1	15385..15579	+	64	167628157	-	HM1_0020	-	hypothetical protein
21	 56.77	0	15598..16254	+	218	167628158	-	HM1_0021	-	udp-glucuronosyltransferase family protein
22	 51.85	0	16272..16406	+	44	167628159	-	HM1_0022	-	macrolide-efflux protein, putative
23	 49.65	-1	16530..16670	+	46	167628160	-	HM1_0023	-	hypothetical protein
24	 49.80	-1	16982..17491	+	169	167628161	-	HM1_0024	-	hypothetical protein
25	 54.31	0	17577..18086	+	169	167628162	-	HM1_0025	-	hypothetical protein
26	 55.43	0	18270..18794	+	174	167628163	-	HM1_0026	-	hypothetical protein
27	 49.48	-1	18927..19403	-	158	167628164	-	HM1_0027	-	hypothetical protein
28	 52.13	0	19756..21378	-	540	167628165	-	HM1_0028	-	IS4 family transposase
29	 61.71	0	21854..22075	-	73	167628166	-	HM1_0029	-	hypothetical protein
30	 55.95	0	22176..23603	+	475	167628167	-	HM1_0030	-	reverse transcriptase (RNA-dependent DNA polymerase)
31	 49.62	-1	23655..24968	-	437	167628168	-	HM1_0031	-	hypothetical protein
32	 32.84	-2	25203..25607	+	134	167628169	-	HM1_0032	-	hypothetical protein
33	 49.55	-1	25836..27179	-	447	167628170	-	HM1_0033	-	IS4 family transposase
34	 38.14	-2	27273..27626	-	117	167628171	-	HM1_0034	-	hypothetical protein
35	 52.00	0	28264..28413	-	49	167628172	-	HM1_0035	-	hypothetical protein
36	 51.59	0	28781..29125	-	114	167628173	-	HM1_0036	-	hypothetical protein
37	 51.46	0	29138..29446	-	102	167628174	-	HM1_0037	-	hypothetical protein
38	 55.90	0	29468..30442	-	324	167628175	-	HM1_0038	-	phage gp37/gp68, putative
39	 51.28	0	30759..30914	-	51	167628176	-	HM1_0039	-	hypothetical protein
40	 54.01	0	30925..31248	-	107	167628177	-	HM1_0040	-	hypothetical protein
41	 54.01	0	31738..32148	-	136	167628178	-	HM1_0041	-	hypothetical protein
42	 49.74	-1	32145..32339	-	64	167628179	-	HM1_0042	-	hypothetical protein
43	 48.15	-1	32501..32716	+	71	167628180	-	HM1_0043	-	hypothetical protein
44	 51.85	0	32925..33680	+	251	167628181	-	HM1_0044	-	fic family protein, putative
45	 53.70	0	33810..34079	-	89	167628182	-	HM1_0045	-	hypothetical protein
46	 54.17	0	34239..34574	+	111	167628183	-	HM1_0046	-	hypothetical protein
47	 49.69	-1	34660..35136	+	158	167628184	-	HM1_0047	-	hypothetical protein
48	 51.99	0	36580..39891	-	1103	167628185	-	HM1_0048	-	tape measure protein, putative
49	 52.15	0	39977..41374	-	465	167628186	-	HM1_0049	-	hypothetical protein
50	 51.02	0	41408..41701	-	97	167628187	-	HM1_0050	-	hypothetical protein
51	 40.67	-2	41729..42682	-	317	167628188	-	HM1_0051	-	hypothetical protein
52	 46.16	-1	42697..43413	-	238	167628189	-	HM1_0052	-	hypothetical protein
53	 49.95	-1	43530..44546	-	338	167628190	-	HM1_0053	-	hypothetical protein
54	 56.14	0	44609..44836	-	75	167628191	-	HM1_0054	-	hypothetical protein
55	 56.01	0	45075..45656	+	193	167628192	-	HM1_0055	-	helix-turn-helix domain-containing protein
56	 46.88	-1	45710..46816	+	368	167628193	-	HM1_0056	-	phage integrase family protein
57	 61.80	0	46895..48436	-	513	167628194	guaA	HM1_0057	-	bifunctional GMP synthase/glutamine amidotransferase protein
58	 56.67	0	48539..49078	-	179	167628195	hpt	HM1_0058	-	hypoxanthine phosphoribosyltransferase
59	 58.44	0	49339..49569	+	76	167628196	-	HM1_0059	-	hypothetical protein
60	 59.32	0	49671..50378	-	235	167628197	-	HM1_0060	-	hypothetical protein
61	 65.45	+1	50565..51059	-	164	167628198	-	HM1_0061	-	molybdenum cofactor biosynthesis protein, putative
62	 62.83	0	51056..51628	-	190	167628199	-	HM1_0062	-	mosc domain-containing protein
63	 60.83	0	51631..52110	-	159	167628200	moaC	HM1_0063	-	molybdenum cofactor biosynthesis protein c
64	 63.11	+1	52251..53234	-	327	167628201	moaA	HM1_0064	-	molybdenum cofactor biosynthesis protein a
65	 56.25	0	53314..53505	-	63	167628202	-	HM1_0065	-	hypothetical protein
66	 50.00	-1	53534..53653	+	39	167628203	-	HM1_0066	-	hypothetical protein
67	 62.25	0	53789..54784	+	331	167628204	-	HM1_0067	-	patatin-like phospholipase, putative
68	 59.29	0	55058..55396	-	112	167628205	-	HM1_0068	-	nitrogen regulatory protein p-II
69	 53.82	0	55424..55999	-	191	167628206	-	HM1_0069	-	response regulator receiver
70	 55.43	0	56270..57070	+	266	167628207	-	HM1_0070	-	unknown yune-like protein, putative permease
71	 54.87	0	57227..58972	-	581	167628208	-	HM1_0071	-	acyl-coa dehydrogenase
72	 59.29	0	59027..60205	-	392	167628209	-	HM1_0072	-	acetyl-CoA acetyltransferase
73	 55.71	0	60226..62625	-	799	167628210	-	HM1_0073	-	3-hydroxyacyl-coa dehydrogenase
74	 52.06	0	62732..63265	-	177	167628211	-	HM1_0074	-	TetR family transcriptional regulator
75	 54.64	0	63352..65055	-	567	167628212	lcfA	HM1_0075	-	long-chain-fatty-acid-coa ligase
76	 63.93	+1	65427..67217	-	596	167628213	pykA	HM1_0076	-	pyruvate kinase
77	 60.45	0	67379..67555	-	58	167628214	-	HM1_0077	-	hypothetical protein
78	 64.07	+1	67582..68544	-	320	167628215	pfkA	HM1_0078	-	6-phosphofructokinase
79	 58.33	0	68711..68842	-	43	167628216	-	HM1_0079	-	hypothetical protein
80	 61.51	0	68808..69815	-	335	167628217	accA	HM1_0080	-	acetyl-CoA carboxylase, carboxyl transferase, alpha subunit
81	 59.50	0	69815..70609	-	264	167628218	accD	HM1_0081	-	acetyl-CoA carboxylase, carboxyl transferase, beta subunit
82	 55.72	0	70718..70918	-	66	167628219	-	HM1_0082	-	hypothetical protein
83	 52.99	0	70945..71178	-	77	167628220	mtrB	HM1_0083	-	transcription attenuation protein MtrB
84	 60.27	0	71308..74934	-	1208	167628221	dnaE	HM1_0084	-	DNA polymerase III alpha subunit, putative
85	 53.09	0	74917..75078	+	53	167628222	-	HM1_0085	-	hypothetical protein
86	 57.91	0	75135..75671	-	178	167628223	ybaK	HM1_0086	-	ybak/prolyl-tRNA synthetase associated region
87	 59.49	0	75921..76157	+	78	167628224	feoA	HM1_0087	-	ferrous iron uptake protein feoa
88	 62.08	0	76177..76983	+	268	167628225	-	HM1_0088	-	ferrous iron transport protein b, putative
89	 61.13	0	76971..78398	+	475	167628226	-	HM1_0089	-	ferrous iron transport protein b, putative
90	 60.62	0	78482..79474	-	330	167628227	-	HM1_0090	-	metallo-beta-lactamase family protein
91	 62.83	0	79640..80134	+	164	167628228	-	HM1_0092	-	phosphinothricin n-acetyltransferase, putative
92	 65.00	+1	80124..80303	-	59	167628229	-	HM1_0091	-	hypothetical protein
93	 58.56	0	80390..82066	-	558	167628230	lcfA	HM1_0093	-	long chain fatty acid acyl-coa ligase
94	 54.21	0	82274..82570	-	98	167628231	-	HM1_0094	-	hypothetical protein
95	 59.78	0	82741..83916	-	391	167628232	metX	HM1_0095	-	homoserine o-acetyltransferase
96	 61.50	0	83932..85227	-	431	167628233	cysD	HM1_0096	-	o-acetylhomoserine sulfhydrylase
97	 56.19	0	85755..86651	+	298	167628234	-	HM1_0097	-	metallo beta-lactamase domain-containing protein
98	 65.87	+1	86940..87191	-	83	167628235	-	HM1_0098	-	hypothetical protein
99	 59.23	0	87259..88038	+	259	167628236	-	HM1_0099	-	vancomycin b-type resistance domain-containing protein
100	 61.42	0	88173..89087	-	304	167628237	pnp	HM1_0100	-	purine nucleoside phosphorylase
56.69	MEAN

6.24	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.