IslandPath Analysis: Staphylococcus aureus subsp. aureus COL



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.84   STD DEV: 3.60
Staphylococcus aureus subsp. aureus COL, complete genome - 1..2809422
2615 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 32.89	0	544..1905	+	453	57651109	dnaA	SACOL0001	-	chromosomal replication initiation protein
2	 32.80	0	2183..3316	+	377	57651110	dnaN	SACOL0002	-	DNA polymerase III subunit beta
3	 35.37	0	3697..3942	+	81	57651111	-	SACOL0003	-	hypothetical protein
4	 33.78	0	3939..5051	+	370	57651112	recF	SACOL0004	-	recombination protein F
5	 37.05	+1	5061..6995	+	644	57651113	gyrB	SACOL0005	-	DNA gyrase, B subunit
6	 36.90	+1	7032..9695	+	887	57651114	gyrA	SACOL0006	-	DNA gyrase, A subunit
7	 37.75	+1	9782..10483	-	233	57651115	-	SACOL0007	-	hypothetical protein
8	 36.90	+1	10920..12434	+	504	57651116	hutH	SACOL0008	-	histidine ammonia-lyase
9	 34.58	0	12813..14099	+	428	57651117	serS	SACOL0009	-	seryl-tRNA synthetase
10	 36.93	+1	14749..15444	+	231	57651118	-	SACOL0010	-	hypothetical protein
11	 34.55	0	15441..15770	+	109	57651119	-	SACOL0011	-	hypothetical protein
12	 35.66	0	16112..17101	+	329	57651120	-	SACOL0012	-	homoserine O-acetyltransferase, putative
13	 32.90	0	17407..18330	+	307	57651121	-	SACOL0013	-	hypothetical protein
14	 35.77	0	18345..20312	+	655	57651122	-	SACOL0014	-	hypothetical protein
15	 31.77	0	20309..20755	+	148	57651123	rplI	SACOL0015	-	50S ribosomal protein L9
16	 38.33	+1	20787..22187	+	466	57651124	dnaB	SACOL0016	-	replicative DNA helicase
17	 31.18	0	22263..22355	+	30	57651125	-	SACOL0017	-	hypothetical protein
18	 36.37	0	22465..23748	+	427	57651126	purA	SACOL0018	-	adenylosuccinate synthetase
19	 36.47	+1	24952..25653	+	233	57651127	yycF	SACOL0019	-	DNA-binding response regulator YycF
20	 34.87	0	25666..27492	+	608	57651128	yycG	SACOL0020	-	sensory box histidine kinase YycG
21	 34.76	0	27485..28819	+	444	57651129	yycH	SACOL0021	-	hypothetical protein
22	 32.45	0	28820..29608	+	262	57651130	yycI	SACOL0022	-	hypothetical protein
23	 35.83	0	29998..30798	+	266	57651131	yycJ	SACOL0023	-	metallo-beta-lactamase family protein YycJ
24	 38.68	+1	31026..33344	+	772	57651132	-	SACOL0024	-	5'-nucleotidase family protein
25	 37.71	+1	33576..34055	-	159	57651133	-	SACOL0025	-	hypothetical protein
26	 28.32	-1	34372..35667	+	431	57651134	-	SACOL0026	-	hypothetical protein
27	 24.58	-2	36082..36321	+	79	57651135	-	SACOL0027	-	hypothetical protein
28	 34.37	0	36353..37027	-	224	57651136	-	SACOL0028	-	IS431mec, transposase
29	 29.17	-1	37285..37452	+	55	57651137	-	SACOL0029	-	HMG-CoA synthase, truncation
30	 35.06	0	37550..37780	+	76	57651382	-	SACOL0030	-	hypothetical protein
31	 33.47	0	38329..39072	+	247	57651138	-	SACOL0031	-	glycerophosphoryl diester phosphodiesterase, putative
32	 29.14	-1	39169..39597	+	142	57651139	maoC	SACOL0032	-	MaoC domain-containing protein
33	 30.54	0	39643..41649	-	668	57651140	mecA	SACOL0033	-	penicillin-binding protein 2'
34	 29.28	0	41749..42735	+	328	57651141	mecR1	SACOL0034	-	methicillin-resistance MecR1 regulatory protein
35	 37.16	+1	42707..42967	+	86	57651142	-	SACOL0035	-	hypothetical protein
36	 28.28	-1	42958..44481	-	507	57651143	-	SACOL0036	-	IS1272 transposase
37	 35.70	0	44617..45123	-	168	57652407	-	SACOL0037	-	hypothetical protein
38	 31.41	0	45138..45449	-	103	57652408	-	SACOL0038	-	hypothetical protein
39	 32.26	0	45451..45543	-	30	57652409	-	SACOL0039	-	hypothetical protein
40	 36.18	0	45536..45886	-	116	57652410	-	SACOL0040	-	hypothetical protein
41	 34.37	0	47998..49347	-	449	57652411	ccrA1	SACOL0042	-	cassette chromosome recombinase A1
42	 34.24	0	49535..51304	-	589	57652412	-	SACOL0043	-	hypothetical protein
43	 33.67	0	51304..51600	-	98	57652413	-	SACOL0044	-	hypothetical protein
44	 25.73	-1	51771..53348	+	525	57652414	-	SACOL0045	-	hypothetical protein
45	 33.63	0	53428..54756	-	442	57652415	-	SACOL0046	-	metallo-beta-lactamase family protein
46	 31.74	0	54775..55842	-	355	57652416	-	SACOL0047	-	hypothetical protein
47	 29.12	-1	55981..56241	+	86	57652417	-	SACOL0048	-	hypothetical protein
48	 29.64	0	56265..56996	+	243	57652418	-	SACOL0049	-	hypothetical protein
49	 40.07	+2	57212..61858	+	1548	57652419	pls	SACOL0050	-	methicillin-resistant surface protein
50	 27.46	-1	61982..63598	+	538	57652420	-	SACOL0051	-	hypothetical protein
51	 27.05	-1	63758..65269	-	503	57652421	-	SACOL0052	-	glycosyl transferase, group 1 family protein
52	 21.51	-2	68407..68499	+	30	57652422	-	SACOL0057	-	hypothetical protein
53	 25.54	-2	68646..70391	+	581	57652423	-	SACOL0058	-	hypothetical protein
54	 35.32	0	70485..70937	-	150	57652424	-	SACOL0059	-	hypothetical protein
55	 31.61	0	71152..71907	-	251	57652425	-	SACOL0061	-	hypothetical protein
56	 31.03	0	71907..72167	-	86	57652426	-	SACOL0062	-	hypothetical protein
57	 31.84	0	72304..73371	+	355	57652427	-	SACOL0063	-	hypothetical protein
58	 33.56	0	73402..74736	+	444	57652428	-	SACOL0064	-	metallo-beta-lactamase family protein
59	 32.58	0	74755..75948	+	397	57652429	-	SACOL0065	-	hypothetical protein
60	 31.37	0	76215..76316	-	33	57652430	-	SACOL0066	-	hypothetical protein
61	 39.23	+1	76615..77547	-	310	57652431	-	SACOL0067	-	hypothetical protein
62	 26.47	-1	77910..78113	+	67	57652432	-	SACOL0068	-	hypothetical protein
63	 31.65	0	78162..78458	+	98	57652433	-	SACOL0069	-	hypothetical protein
64	 28.99	-1	78530..79750	-	406	57652434	-	SACOL0070	-	permease, putative
65	 31.39	0	79743..80204	-	153	57652435	-	SACOL0071	-	hypothetical protein
66	 27.64	-1	80406..81266	+	286	57652436	-	SACOL0072	-	hypothetical protein
67	 26.22	-1	81621..82154	-	177	57652437	-	SACOL0073	-	hypothetical protein
68	 26.12	-1	82254..82988	+	244	57652438	-	SACOL0074	-	hypothetical protein
69	 30.18	0	83422..84024	+	200	57652439	-	SACOL0075	-	hypothetical protein
70	 31.34	0	84291..87443	+	1050	57652440	-	SACOL0076	-	hypothetical protein
71	 32.09	0	87500..87982	+	160	57652441	-	SACOL0077	-	hypothetical protein
72	 33.33	0	88187..89173	+	328	57652442	plc	SACOL0078	-	1-phosphatidylinositol phosphodiesterase
73	 29.57	0	89394..90164	+	256	57652443	-	SACOL0079	-	hypothetical protein
74	 28.15	-1	90216..90986	+	256	57652444	-	SACOL0080	-	hypothetical protein
75	 29.70	0	91050..91214	+	54	57652445	-	SACOL0081	-	hypothetical protein
76	 29.82	0	91227..91823	+	198	57652446	-	SACOL0082	-	hypothetical protein
77	 31.12	0	91890..92657	+	255	57652447	-	SACOL0083	-	staphylococcal tandem lipoprotein
78	 33.70	0	92790..94988	+	732	57652448	-	SACOL0084	-	AraC family transcriptional regulator
79	 37.15	+1	95139..96317	+	392	57652449	-	SACOL0085	-	M20/M25/M40 family peptidase
80	 36.79	+1	96319..97707	+	462	57652450	-	SACOL0086	-	drug transporter, putative
81	 33.33	0	97875..97982	+	35	57652451	-	SACOL0087	-	hypothetical protein
82	 36.10	0	98200..99861	-	553	57652452	-	SACOL0088	-	Na/Pi cotransporter family protein
83	 35.53	0	100187..101962	-	591	57652453	-	SACOL0089	-	antigen, 67 kDa
84	 30.81	0	102136..103008	-	290	57652454	-	SACOL0090	-	integral membrane domain-containing protein
85	 29.04	-1	103121..104518	+	465	57652455	-	SACOL0091	-	GntR family transcriptional regulator
86	 29.96	0	104708..105181	+	157	57652456	-	SACOL0092	-	hypothetical protein
87	 34.59	0	105443..107035	+	530	57652457	-	SACOL0093	-	L-lactate permease
88	 38.11	+1	107364..108890	-	508	57652458	spa	SACOL0095	-	immunoglobulin G binding protein A precursor
89	 27.49	-1	109311..110063	-	250	57652459	sarS	SACOL0096	-	staphylococcal accessory regulator S
90	 36.74	+1	110432..111430	-	332	57652460	sirC	SACOL0097	-	iron compound ABC transporter, permease protein SirC
91	 38.45	+1	111427..112422	-	331	57652461	sirB	SACOL0098	-	iron compound ABC transporter, permease protein SirB
92	 32.23	0	112438..113430	-	330	57652462	sirA	SACOL0099	-	iron compound ABC transporter, iron compound-binding protein SirA
93	 36.92	+1	113694..114641	+	315	57652463	-	SACOL0100	-	cysteine synthase/cystathionine beta-synthase family protein
94	 37.44	+1	114650..115648	+	332	57652464	-	SACOL0101	-	ornithine cyclodeaminase, putative
95	 35.90	0	115669..117423	+	584	57652465	-	SACOL0102	-	IucC family siderophore biosynthesis protein
96	 39.14	+1	117416..118672	+	418	57652466	-	SACOL0103	-	drug transporter, putative
97	 36.61	+1	118662..120398	+	578	57652467	-	SACOL0104	-	IucA family siderophore biosynthesis protein
98	 36.09	0	120379..122157	+	592	57652468	-	SACOL0105	-	IucC family siderophore biosynthesis protein
99	 40.15	+2	122132..122908	+	258	57652469	-	SACOL0106	-	HPCH/HPAI aldolase family protein
100	 36.66	+1	122908..124110	+	400	57652470	-	SACOL0107	-	pyridoxal-dependent decarboxylase
32.84	MEAN

3.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.