IslandPathversion 1.0

IslandPath Analysis: Pseudomonas stutzeri A1501



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.79 STD DEV: 4.21
Pseudomonas stutzeri A1501, complete genome - 1..4567418
4128 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 60.84	0	380..1924	+	514	146280398	dnaA	PST_0001	-	chromosomal replication initiation protein
2	 62.14	0	1958..3061	+	367	146280399	dnaN	PST_0002	-	DNA polymerase III subunit beta
3	 60.83	0	3071..4183	+	370	146280400	recF	PST_0003	-	recombination protein F
4	 60.75	0	4180..6594	+	804	146280401	gyrB	PST_0004	-	DNA gyrase subunit B
5	 65.52	0	6798..8360	+	520	146280402	ahpF-1	PST_0005	-	alkyl hydroperoxide reductase subunit F
6	 64.11	0	8434..9804	-	456	146280403	-	PST_0006	-	GGDEF domain-containing protein
7	 65.87	0	9852..10601	-	249	146280404	-	PST_0007	-	1-acylglycerol-3-phosphate O-acyltransferase
8	 65.11	0	10598..11176	-	192	146280405	-	PST_0008	-	histidinol-phosphate phosphatase family protein
9	 66.62	0	11145..13199	-	684	146280406	glyS	PST_0009	-	glycyl-tRNA synthetase subunit beta
10	 64.48	0	13196..14062	-	288	146280407	glyQ	PST_0010	-	glycyl-tRNA synthetase subunit alpha
11	 65.59	0	14251..14808	+	185	146280408	tag	PST_0011	-	DNA-3-methyladenine glycosidase I
12	 64.08	0	14908..15795	+	295	162139469	-	PST_0012	-	lipid A biosynthesis lauroyl acyltransferase
13	 64.18	0	16105..16506	-	133	146280410	-	PST_0013	-	hypothetical protein
14	 66.19	0	16570..17409	-	279	146280411	-	PST_0014	-	amino acid ABC transporter, ATP-binding protein
15	 63.94	0	17406..18065	-	219	146280412	-	PST_0015	-	amino acid ABC transporter, permease protein
16	 65.39	0	18062..18766	-	234	146280413	-	PST_0016	-	amino acid ABC transporter, permease protein
17	 65.85	0	18841..19698	-	285	146280414	-	PST_0017	-	amino acid ABC transporter, periplasmic amino acid-binding protein
18	 65.87	0	20038..21411	-	457	146280415	trkA	PST_0018	-	potassium transporter peripheral membrane component
19	 68.41	+1	21486..22808	-	440	146280416	sun	PST_0019	-	ribosomal RNA small subunit methyltransferase B
20	 68.25	+1	22805..23749	-	314	146280417	fmt	PST_0020	-	methionyl-tRNA formyltransferase
21	 60.55	0	23802..24308	-	168	146280418	def	PST_0021	-	peptide deformylase
22	 64.18	0	24357..25481	+	374	146280419	-	PST_0022	-	hypothetical protein
23	 69.03	+1	25568..26665	+	365	146280420	-	PST_0023	-	DNA processing protein DprA, putative
24	 69.89	+1	26803..27360	+	185	146280421	-	PST_0024	-	hypothetical protein
25	 66.80	0	27414..28166	-	250	146280422	qor-1	PST_0025	-	quinone oxidoreductase
26	 67.10	0	28544..29464	+	306	146280423	hemF	PST_0026	-	coproporphyrinogen III oxidase
27	 69.80	+1	29537..30367	+	276	146280424	aroE	PST_0027	-	shikimate 5-dehydrogenase
28	 67.26	0	30459..30965	-	168	146280425	-	PST_0028	-	putative NADH-flavin reductase
29	 66.99	0	31077..31382	-	101	146280426	-	PST_0029	-	hypothetical protein
30	 64.36	0	31408..32580	+	390	146280427	pbpG	PST_0030	-	D-alanyl-D-alanine endopeptidase
31	 65.69	0	33154..35304	+	716	146280428	-	PST_0031	-	TonB-dependent receptor
32	 69.60	+1	35226..36827	+	533	146280429	-	PST_0032	-	Na+/proline symporter
33	 69.72	+1	36806..38509	-	567	146280430	-	PST_0033	-	hypothetical protein
34	 66.91	0	38674..40743	+	689	146280431	-	PST_0034	-	trehalose synthase
35	 66.34	0	40827..41432	+	201	146280432	-	PST_0035	-	hypothetical protein
36	 64.08	0	41544..42317	-	257	146280433	metQ-2	PST_0036	-	D-methionine-binding lipoprotein MetQ
37	 66.37	0	42376..43053	-	225	146280434	metI-2	PST_0037	-	D-methionine ABC transporter, permease protein
38	 66.67	0	43053..44117	-	354	146280435	metN-2	PST_0038	-	D-methionine ABC transporter, ATP-binding protein
39	 65.22	0	44325..46460	+	711	146280436	katE	PST_0039	-	hydroperoxidase II
40	 63.86	0	46605..47102	-	165	146280437	-	PST_0040	-	metal-dependent hydrolase
41	 68.83	+1	47102..47887	-	261	146280438	-	PST_0041	-	zinc ABC transporter, permease protein
42	 67.68	0	47889..48578	-	229	146280439	znuC	PST_0042	-	zinc transport protein ZnuC
43	 69.34	+1	48656..49141	-	161	146280440	np20	PST_0043	-	transcriptional regulator np20
44	 68.08	+1	49200..50192	+	330	146280441	znuA	PST_0044	-	zinc ABC transporter, periplasmic zinc-binding protein
45	 66.67	0	50331..51650	-	439	146280442	-	PST_0045	-	beta amino acid--pyruvate transaminase
46	 67.70	0	51789..53336	-	515	146280443	-	PST_0047	-	hypothetical protein
47	 68.14	+1	51837..53330	+	497	146280444	-	PST_0046	-	aldehyde dehydrogenase family protein
48	 66.88	0	53432..54835	-	467	146280445	-	PST_0048	-	glycosyl transferase, group 2 family protein
49	 72.54	+2	54832..55869	-	345	146280446	-	PST_0049	-	hypothetical protein
50	 64.36	0	57079..57468	-	129	146280447	-	PST_0050	-	response regulator receiver
51	 68.04	+1	57465..60371	-	968	146280448	-	PST_0051	-	two-component sensor
52	 68.25	+1	60469..62109	-	546	146280449	-	PST_0052	-	two-component response regulator
53	 63.85	0	62102..62491	-	129	146280450	cheY-1	PST_0053	-	chemotaxis protein CheY
54	 67.09	0	62488..64869	-	793	146280451	-	PST_0054	-	signal transduction histidine kinase
55	 63.31	0	64976..65362	-	128	146280452	-	PST_0055	-	two-component response regulator
56	 67.26	0	65412..68450	-	1012	146280453	-	PST_0056	-	hypothetical protein
57	 65.10	0	68677..69885	+	402	146280454	-	PST_0057	-	fatty acid desaturase
58	 66.42	0	70203..71012	+	269	146280455	-	PST_0058	-	sensory box protein
59	 66.91	0	71034..71438	-	134	146280456	-	PST_0059	-	putative lyase
60	 68.11	+1	71485..72591	-	368	146280457	-	PST_0060	-	agmatine deiminase
61	 64.63	0	72692..73573	-	293	146280458	-	PST_0061	-	hydratase
62	 66.97	0	73698..74348	-	216	146280459	-	PST_0062	-	TetR family transcriptional regulator
63	 63.17	0	74423..75796	-	457	146280460	-	PST_0063	-	glutamate--ammonia ligase
64	 66.00	0	76037..76783	+	248	146280461	-	PST_0064	-	glutamine amidotransferase
65	 63.80	0	76826..78184	+	452	146280462	-	PST_0065	-	putative glutamine synthetase, catalytic region
66	 65.42	0	78252..79610	+	452	146280463	-	PST_0066	-	putative aminotransferase
67	 61.20	0	79827..80924	+	365	146280464	potF2	PST_0067	-	putrescine ABC transporter, periplasmic putrescine-binding protein
68	 60.68	0	81202..82287	+	361	146280465	potF3	PST_0068	-	putrescine ABC transporter, periplasmic putrescine-binding protein
69	 62.93	0	82435..83586	+	383	146280466	potG	PST_0069	-	putrescine ABC transporter, ATP-binding protein
70	 61.65	0	83583..84479	+	298	146280467	potH	PST_0070	-	putrescine ABC transporter, permease protein
71	 66.11	0	84476..85378	+	300	146280468	potI	PST_0071	-	putrescine ABC transporter, permease protein
72	 68.02	+1	85463..86125	-	220	146280469	-	PST_0073	-	thiol-disulfide isomerase and thioredoxins protein
73	 66.67	0	86118..87056	+	312	146280470	-	PST_0072	-	lysophospholipase
74	 67.32	0	87070..87834	-	254	146280471	-	PST_0074	-	hypothetical protein
75	 67.98	0	88065..88598	+	177	146280472	-	PST_0075	-	2OG-Fe(II) oxygenase family oxidoreductase
76	 64.72	0	88681..89961	-	426	146280473	dctM	PST_0076	-	C4-dicarboxylate transporter
77	 62.54	0	89958..90587	-	209	146280474	dctQ	PST_0077	-	dicarboxylate transporter
78	 60.88	0	90853..91923	-	356	146280475	dctP	PST_0078	-	C4 dicarboxylate binding protein
79	 69.18	+1	92194..93588	-	464	146280476	dctD	PST_0079	-	C4 dicarboxylate transport response regulator protein
80	 69.44	+1	93585..95390	-	601	146280477	dctB	PST_0080	-	C4 dicarboxylate transport sensor protein
81	 69.29	+1	95496..96410	-	304	146280478	-	PST_0081	-	dTDP-4-dehydrorhamnose reductase
82	 63.37	0	96407..96952	-	181	146280479	-	PST_0082	-	dTDP-4-dehydrorhamnose 3,5-epimerase
83	 62.31	0	96949..97821	-	290	146280480	-	PST_0083	-	glucose 1 PH thymidilate transferase
84	 65.56	0	97818..98807	-	329	146280481	rfbB-2	PST_0084	-	dTDP-glucose 4,6-dehydratase
85	 67.38	0	99085..100200	-	371	146280482	-	PST_0085	-	ABC-type multidrug transport system, permease component
86	 67.97	0	100202..102973	-	923	146280483	-	PST_0086	-	ATP-binding/permease fusion ABC transporter
87	 67.66	0	102937..104046	-	369	146280484	-	PST_0087	-	Type I antifreeze protein:HlyD family secretion protein
88	 68.12	+1	104132..104752	-	206	146280485	-	PST_0088	-	putative lipoprotein
89	 65.07	0	104749..105687	-	312	146280486	-	PST_0089	-	ABC transporter permease
90	 67.81	0	105689..106474	-	261	146280487	-	PST_0090	-	ABC transporter ATP-binding protein
91	 66.67	0	106471..107559	-	362	146280488	-	PST_0091	-	ABC transporter permease
92	 66.23	0	107764..108900	-	378	146280489	-	PST_0092	-	catalase
93	 66.19	0	108928..110799	-	623	146280490	-	PST_0093	-	hypothetical protein
94	 66.95	0	111344..112039	+	231	146280491	-	PST_0095	-	nickel-dependent hydrogenase b-type cytochrome subunit
95	 65.19	0	112055..114289	+	744	146280492	gabD-2	PST_0096	-	succinate-semialdehyde dehydrogenase
96	 64.90	0	112076..112528	-	150	146280493	-	PST_0097	-	cytochrome c, class II
97	 70.48	+1	114439..115644	+	401