IslandPath Analysis: Pseudomonas stutzeri A1501



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.79   STD DEV: 4.21
Pseudomonas stutzeri A1501, complete genome - 1..4567418
4128 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 60.84	0	380..1924	+	514	146280398	dnaA	PST_0001	-	chromosomal replication initiation protein
2	 62.14	0	1958..3061	+	367	146280399	dnaN	PST_0002	-	DNA polymerase III subunit beta
3	 60.83	0	3071..4183	+	370	146280400	recF	PST_0003	-	recombination protein F
4	 60.75	0	4180..6594	+	804	146280401	gyrB	PST_0004	-	DNA gyrase subunit B
5	 65.52	0	6798..8360	+	520	146280402	ahpF-1	PST_0005	-	alkyl hydroperoxide reductase subunit F
6	 64.11	0	8434..9804	-	456	146280403	-	PST_0006	-	GGDEF domain-containing protein
7	 65.87	0	9852..10601	-	249	146280404	-	PST_0007	-	1-acylglycerol-3-phosphate O-acyltransferase
8	 65.11	0	10598..11176	-	192	146280405	-	PST_0008	-	histidinol-phosphate phosphatase family protein
9	 66.62	0	11145..13199	-	684	146280406	glyS	PST_0009	-	glycyl-tRNA synthetase subunit beta
10	 64.48	0	13196..14062	-	288	146280407	glyQ	PST_0010	-	glycyl-tRNA synthetase subunit alpha
11	 65.59	0	14251..14808	+	185	146280408	tag	PST_0011	-	DNA-3-methyladenine glycosidase I
12	 64.08	0	14908..15795	+	295	162139469	-	PST_0012	-	lipid A biosynthesis lauroyl acyltransferase
13	 64.18	0	16105..16506	-	133	146280410	-	PST_0013	-	hypothetical protein
14	 66.19	0	16570..17409	-	279	146280411	-	PST_0014	-	amino acid ABC transporter, ATP-binding protein
15	 63.94	0	17406..18065	-	219	146280412	-	PST_0015	-	amino acid ABC transporter, permease protein
16	 65.39	0	18062..18766	-	234	146280413	-	PST_0016	-	amino acid ABC transporter, permease protein
17	 65.85	0	18841..19698	-	285	146280414	-	PST_0017	-	amino acid ABC transporter, periplasmic amino acid-binding protein
18	 65.87	0	20038..21411	-	457	146280415	trkA	PST_0018	-	potassium transporter peripheral membrane component
19	 68.41	+1	21486..22808	-	440	146280416	sun	PST_0019	-	ribosomal RNA small subunit methyltransferase B
20	 68.25	+1	22805..23749	-	314	146280417	fmt	PST_0020	-	methionyl-tRNA formyltransferase
21	 60.55	0	23802..24308	-	168	146280418	def	PST_0021	-	peptide deformylase
22	 64.18	0	24357..25481	+	374	146280419	-	PST_0022	-	hypothetical protein
23	 69.03	+1	25568..26665	+	365	146280420	-	PST_0023	-	DNA processing protein DprA, putative
24	 69.89	+1	26803..27360	+	185	146280421	-	PST_0024	-	hypothetical protein
25	 66.80	0	27414..28166	-	250	146280422	qor-1	PST_0025	-	quinone oxidoreductase
26	 67.10	0	28544..29464	+	306	146280423	hemF	PST_0026	-	coproporphyrinogen III oxidase
27	 69.80	+1	29537..30367	+	276	146280424	aroE	PST_0027	-	shikimate 5-dehydrogenase
28	 67.26	0	30459..30965	-	168	146280425	-	PST_0028	-	putative NADH-flavin reductase
29	 66.99	0	31077..31382	-	101	146280426	-	PST_0029	-	hypothetical protein
30	 64.36	0	31408..32580	+	390	146280427	pbpG	PST_0030	-	D-alanyl-D-alanine endopeptidase
31	 65.69	0	33154..35304	+	716	146280428	-	PST_0031	-	TonB-dependent receptor
32	 69.60	+1	35226..36827	+	533	146280429	-	PST_0032	-	Na+/proline symporter
33	 69.72	+1	36806..38509	-	567	146280430	-	PST_0033	-	hypothetical protein
34	 66.91	0	38674..40743	+	689	146280431	-	PST_0034	-	trehalose synthase
35	 66.34	0	40827..41432	+	201	146280432	-	PST_0035	-	hypothetical protein
36	 64.08	0	41544..42317	-	257	146280433	metQ-2	PST_0036	-	D-methionine-binding lipoprotein MetQ
37	 66.37	0	42376..43053	-	225	146280434	metI-2	PST_0037	-	D-methionine ABC transporter, permease protein
38	 66.67	0	43053..44117	-	354	146280435	metN-2	PST_0038	-	D-methionine ABC transporter, ATP-binding protein
39	 65.22	0	44325..46460	+	711	146280436	katE	PST_0039	-	hydroperoxidase II
40	 63.86	0	46605..47102	-	165	146280437	-	PST_0040	-	metal-dependent hydrolase
41	 68.83	+1	47102..47887	-	261	146280438	-	PST_0041	-	zinc ABC transporter, permease protein
42	 67.68	0	47889..48578	-	229	146280439	znuC	PST_0042	-	zinc transport protein ZnuC
43	 69.34	+1	48656..49141	-	161	146280440	np20	PST_0043	-	transcriptional regulator np20
44	 68.08	+1	49200..50192	+	330	146280441	znuA	PST_0044	-	zinc ABC transporter, periplasmic zinc-binding protein
45	 66.67	0	50331..51650	-	439	146280442	-	PST_0045	-	beta amino acid--pyruvate transaminase
46	 67.70	0	51789..53336	-	515	146280443	-	PST_0047	-	hypothetical protein
47	 68.14	+1	51837..53330	+	497	146280444	-	PST_0046	-	aldehyde dehydrogenase family protein
48	 66.88	0	53432..54835	-	467	146280445	-	PST_0048	-	glycosyl transferase, group 2 family protein
49	 72.54	+2	54832..55869	-	345	146280446	-	PST_0049	-	hypothetical protein
50	 64.36	0	57079..57468	-	129	146280447	-	PST_0050	-	response regulator receiver
51	 68.04	+1	57465..60371	-	968	146280448	-	PST_0051	-	two-component sensor
52	 68.25	+1	60469..62109	-	546	146280449	-	PST_0052	-	two-component response regulator
53	 63.85	0	62102..62491	-	129	146280450	cheY-1	PST_0053	-	chemotaxis protein CheY
54	 67.09	0	62488..64869	-	793	146280451	-	PST_0054	-	signal transduction histidine kinase
55	 63.31	0	64976..65362	-	128	146280452	-	PST_0055	-	two-component response regulator
56	 67.26	0	65412..68450	-	1012	146280453	-	PST_0056	-	hypothetical protein
57	 65.10	0	68677..69885	+	402	146280454	-	PST_0057	-	fatty acid desaturase
58	 66.42	0	70203..71012	+	269	146280455	-	PST_0058	-	sensory box protein
59	 66.91	0	71034..71438	-	134	146280456	-	PST_0059	-	putative lyase
60	 68.11	+1	71485..72591	-	368	146280457	-	PST_0060	-	agmatine deiminase
61	 64.63	0	72692..73573	-	293	146280458	-	PST_0061	-	hydratase
62	 66.97	0	73698..74348	-	216	146280459	-	PST_0062	-	TetR family transcriptional regulator
63	 63.17	0	74423..75796	-	457	146280460	-	PST_0063	-	glutamate--ammonia ligase
64	 66.00	0	76037..76783	+	248	146280461	-	PST_0064	-	glutamine amidotransferase
65	 63.80	0	76826..78184	+	452	146280462	-	PST_0065	-	putative glutamine synthetase, catalytic region
66	 65.42	0	78252..79610	+	452	146280463	-	PST_0066	-	putative aminotransferase
67	 61.20	0	79827..80924	+	365	146280464	potF2	PST_0067	-	putrescine ABC transporter, periplasmic putrescine-binding protein
68	 60.68	0	81202..82287	+	361	146280465	potF3	PST_0068	-	putrescine ABC transporter, periplasmic putrescine-binding protein
69	 62.93	0	82435..83586	+	383	146280466	potG	PST_0069	-	putrescine ABC transporter, ATP-binding protein
70	 61.65	0	83583..84479	+	298	146280467	potH	PST_0070	-	putrescine ABC transporter, permease protein
71	 66.11	0	84476..85378	+	300	146280468	potI	PST_0071	-	putrescine ABC transporter, permease protein
72	 68.02	+1	85463..86125	-	220	146280469	-	PST_0073	-	thiol-disulfide isomerase and thioredoxins protein
73	 66.67	0	86118..87056	+	312	146280470	-	PST_0072	-	lysophospholipase
74	 67.32	0	87070..87834	-	254	146280471	-	PST_0074	-	hypothetical protein
75	 67.98	0	88065..88598	+	177	146280472	-	PST_0075	-	2OG-Fe(II) oxygenase family oxidoreductase
76	 64.72	0	88681..89961	-	426	146280473	dctM	PST_0076	-	C4-dicarboxylate transporter
77	 62.54	0	89958..90587	-	209	146280474	dctQ	PST_0077	-	dicarboxylate transporter
78	 60.88	0	90853..91923	-	356	146280475	dctP	PST_0078	-	C4 dicarboxylate binding protein
79	 69.18	+1	92194..93588	-	464	146280476	dctD	PST_0079	-	C4 dicarboxylate transport response regulator protein
80	 69.44	+1	93585..95390	-	601	146280477	dctB	PST_0080	-	C4 dicarboxylate transport sensor protein
81	 69.29	+1	95496..96410	-	304	146280478	-	PST_0081	-	dTDP-4-dehydrorhamnose reductase
82	 63.37	0	96407..96952	-	181	146280479	-	PST_0082	-	dTDP-4-dehydrorhamnose 3,5-epimerase
83	 62.31	0	96949..97821	-	290	146280480	-	PST_0083	-	glucose 1 PH thymidilate transferase
84	 65.56	0	97818..98807	-	329	146280481	rfbB-2	PST_0084	-	dTDP-glucose 4,6-dehydratase
85	 67.38	0	99085..100200	-	371	146280482	-	PST_0085	-	ABC-type multidrug transport system, permease component
86	 67.97	0	100202..102973	-	923	146280483	-	PST_0086	-	ATP-binding/permease fusion ABC transporter
87	 67.66	0	102937..104046	-	369	146280484	-	PST_0087	-	Type I antifreeze protein:HlyD family secretion protein
88	 68.12	+1	104132..104752	-	206	146280485	-	PST_0088	-	putative lipoprotein
89	 65.07	0	104749..105687	-	312	146280486	-	PST_0089	-	ABC transporter permease
90	 67.81	0	105689..106474	-	261	146280487	-	PST_0090	-	ABC transporter ATP-binding protein
91	 66.67	0	106471..107559	-	362	146280488	-	PST_0091	-	ABC transporter permease
92	 66.23	0	107764..108900	-	378	146280489	-	PST_0092	-	catalase
93	 66.19	0	108928..110799	-	623	146280490	-	PST_0093	-	hypothetical protein
94	 66.95	0	111344..112039	+	231	146280491	-	PST_0095	-	nickel-dependent hydrogenase b-type cytochrome subunit
95	 65.19	0	112055..114289	+	744	146280492	gabD-2	PST_0096	-	succinate-semialdehyde dehydrogenase
96	 64.90	0	112076..112528	-	150	146280493	-	PST_0097	-	cytochrome c, class II
97	 70.48	+1	114439..115644	+	401	146280494	-	PST_0098	-	response regulator
98	 67.14	0	115867..117972	+	701	146280495	-	PST_0099	-	enoyl-CoA hydratase
99	 63.49	0	118016..119212	+	398	146280496	-	PST_0100	-	putative acyl-CoA dehydrogenase family protein
100	 65.70	0	119225..120367	+	380	146280497	-	PST_0101	-	putative acyl-CoA dehydrogenase
63.79	MEAN

4.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.