IslandPath Analysis: Desulfovibrio vulgaris str. Hildenborough



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.04   STD DEV: 5.68
Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome - 1..3570858
3379 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.56	0	151..1464	+	437	46578418	dnaA-1	DVU0001	-	chromosomal replication initiator protein DnaA
2	 59.48	0	1610..2764	+	384	46578419	dnaN	DVU0002	-	DNA polymerase III, beta subunit
3	 63.04	0	2766..5162	+	798	46578420	gyrB	DVU0003	-	DNA gyrase, B subunit
4	 63.01	0	5262..7832	+	856	46578421	gyrA	DVU0004	-	DNA gyrase, A subunit
5	 64.63	0	7835..8620	+	261	46578422	-	DVU0005	-	putative lipoprotein
6	 62.37	0	8913..9377	-	154	46578423	-	DVU0006	-	universal stress protein
7	 62.27	0	9552..10937	-	461	46578424	asnC	DVU0007	-	asparaginyl-tRNA synthetase
8	 42.86	-2	11095..11220	-	41	46578425	-	DVU0008	-	hypothetical protein
9	 66.67	0	11681..12961	-	426	46578426	-	DVU0009	-	TRAP transporter, DctM subunit
10	 65.26	0	12958..13524	-	188	46578427	-	DVU0010	-	TRAP transporter, DctQ subunit
11	 62.96	0	13586..14611	-	341	46578428	-	DVU0011	-	TRAP transporter solute receptor DctP
12	 64.67	0	15099..16301	+	400	46578429	-	DVU0012	-	hypothetical protein
13	 64.12	0	16462..18270	+	602	46578430	-	DVU0013	-	sensory box histidine kinase
14	 56.62	0	18470..18688	-	72	46578431	infA-1	DVU0014	-	translation initiation factor IF-1
15	 62.37	0	18804..19595	-	263	46578432	lgt	DVU0015	-	prolipoprotein diacylglyceryl transferase
16	 56.19	-1	19735..19839	+	34	46578433	-	DVU0016	-	hypothetical protein
17	 53.67	-1	19976..20152	-	58	46578434	-	DVU0017	-	hypothetical protein
18	 58.36	0	20136..22385	+	749	46578435	-	DVU0018	-	methyl-accepting chemotaxis protein, putative
19	 58.95	0	22502..23110	-	202	46578436	ngr	DVU0019	-	nigerythrin
20	 63.95	0	23221..23367	-	48	46578437	-	DVU0020	-	hypothetical protein
21	 61.99	0	23612..24658	-	348	46578438	-	DVU0021	-	hypothetical protein
22	 64.06	0	24857..27238	-	793	46578439	-	DVU0022	-	HAMP domain/GGDEF domain/EAL domain-containing protein
23	 53.54	-1	27228..27425	+	65	46578440	-	DVU0023	-	hypothetical protein
24	 59.65	0	27468..27638	+	56	46578441	-	DVU0024	-	hypothetical protein
25	 64.44	0	27714..29873	-	719	46578442	-	DVU0025	-	sensory box histidine kinase
26	 64.40	0	30487..31059	+	190	46578443	-	DVU0026	-	hypothetical protein
27	 63.93	0	31278..32702	-	474	46578444	-	DVU0027	-	hypothetical protein
28	 64.02	0	33232..33609	+	125	46578445	csaA	DVU0028	-	chaperone CsaA
29	 68.88	+1	33986..35698	+	570	46578446	-	DVU0029	-	hydantoinase/oxoprolinase family protein
30	 68.06	+1	36482..37984	-	500	46578447	-	DVU0030	-	GntR family transcriptional regulator
31	 69.65	+1	38435..39172	+	245	46578448	-	DVU0031	-	AzlC family protein
32	 66.07	0	39162..39497	+	111	46578449	-	DVU0032	-	hypothetical protein
33	 66.34	0	39764..40378	+	204	46578450	-	DVU0033	-	isochorismatase family protein
34	 63.36	0	40526..41311	+	261	46578451	-	DVU0034	-	DSBA-like thioredoxin domain-containing protein
35	 64.37	0	41700..41873	-	57	46578452	-	DVU0035	-	hypothetical protein
36	 63.16	0	42287..42742	-	151	46578453	-	DVU0036	-	hypothetical protein
37	 66.19	0	42924..43340	-	138	46578454	-	DVU0037	-	hypothetical protein
38	 68.99	+1	43678..45528	-	616	46578455	-	DVU0038	-	acyltransferase domain-containing protein
39	 66.48	0	45740..46270	+	176	46578456	-	DVU0039	-	C4-type zinc finger DksA/TraR family protein
40	 66.67	0	46450..47064	+	204	46578457	-	DVU0040	-	hypothetical protein
41	 65.93	0	47257..49020	-	587	46578458	-	DVU0041	-	Slt family transglycosylase
42	 68.27	+1	49565..50314	+	249	46578459	-	DVU0042	-	RNA methyltransferase
43	 54.81	-1	50554..50823	-	89	46578460	fliQ	DVU0043	-	flagellar biosynthetic protein FliQ
44	 60.31	0	50840..51547	-	235	46578461	fliP	DVU0044	-	flagellar biosynthesis protein FliP
45	 65.71	0	51576..52097	-	173	46578462	-	DVU0045	-	flagellar biosynthesis protein, FliO, putative
46	 63.35	0	52090..52602	-	170	46578463	fliN	DVU0046	-	flagellar motor switch protein FliN
47	 64.92	0	52628..53143	-	171	46578464	-	DVU0047	-	flagellar protein FliL
48	 66.13	0	53164..53904	-	246	46578465	-	DVU0048	-	chemotaxis protein MotB
49	 68.68	+1	53901..54995	-	364	46578466	-	DVU0049	-	OmpA family protein
50	 65.61	0	55007..55765	-	252	46578467	motA-1	DVU0050	-	chemotaxis protein MotA
51	 65.83	0	56041..56754	-	237	46578468	-	DVU0051	-	hypothetical protein
52	 63.65	0	56847..57773	-	308	46578469	era	DVU0052	-	GTP-binding protein Era
53	 67.89	+1	58116..60077	+	653	46578470	-	DVU0053	-	sulfate permease, putative
54	 67.46	0	60507..61766	+	419	46578471	-	DVU0054	-	dihydrouridine synthase family protein
55	 65.75	0	61763..62635	+	290	46578472	ispH	DVU0055	-	hydroxymethylbutenyl pyrophosphate reductase
56	 60.59	0	62676..63629	+	317	46578473	cheV-1	DVU0056	-	chemotaxis protein CheV
57	 63.40	0	63889..64530	+	213	46578474	-	DVU0057	-	TetR family transcriptional regulator
58	 70.66	+1	64527..65678	+	383	46578475	-	DVU0058	-	RND family efflux transporter MFP subunit
59	 67.45	0	65675..69385	+	1236	46578476	-	DVU0059	-	AcrB/AcrD/AcrF family protein
60	 66.92	0	69540..70724	+	394	46578477	-	DVU0060	-	RND family efflux transporter MFP subunit
61	 63.20	0	70740..73880	+	1046	46578478	-	DVU0061	-	multidrug resistance protein, putative
62	 68.25	+1	73877..75391	+	504	46578479	-	DVU0062	-	RND efflux system outer membrane lipoprotein
63	 63.04	0	75421..75861	+	146	46578480	-	DVU0063	-	MarR family transcriptional regulator
64	 64.03	0	75950..76858	+	302	46578481	-	DVU0064	-	hypothetical protein
65	 68.67	+1	77110..77907	+	265	46578482	-	DVU0065	-	hypothetical protein
66	 63.86	0	78122..78691	+	189	46578483	-	DVU0066	-	cytidine/deoxycytidylate deaminase domain-containing protein
67	 64.40	0	78862..79170	-	102	46578484	-	DVU0067	-	hypothetical protein
68	 67.71	0	79547..81082	-	511	46578485	-	DVU0068	-	hypothetical protein
69	 70.28	+1	81263..85666	-	1467	46578486	-	DVU0069	-	hypothetical protein
70	 70.21	+1	85666..87021	-	451	46578487	-	DVU0070	-	Ser/Thr protein phosphatase family protein
71	 68.48	+1	87539..88699	+	386	46578488	dinP	DVU0071	-	DNA polymerase IV
72	 61.92	0	89105..89884	+	259	46578489	-	DVU0072	-	glucose-1-phosphate cytidylyl-transferase
73	 67.39	0	89894..91000	+	368	46578490	-	DVU0073	-	CDP-glucose-4,6-dehydratase, putative
74	 68.24	+1	90988..91431	+	147	46578491	-	DVU0074	-	polysaccharide biosynthesis domain-containing protein
75	 67.46	0	91765..92898	+	377	46578492	-	DVU0075	-	aminotransferase
76	 67.16	0	92949..93953	+	334	46578493	-	DVU0076	-	glycosyl transferase, group 2 family protein
77	 67.41	0	94316..95398	+	360	46578494	-	DVU0077	-	hypothetical protein
78	 66.37	0	95445..95786	+	113	46578495	-	DVU0078	-	hypothetical protein
79	 66.54	0	96159..96962	+	267	46578496	-	DVU0079	-	ZIP zinc transporter family protein
80	 66.38	0	97000..98406	+	468	46578497	fumC	DVU0080	-	fumarate hydratase
81	 64.82	0	98559..100289	-	576	46578498	-	DVU0081	-	sensory box histidine kinase/response regulator
82	 67.11	0	100383..101975	-	530	46578499	-	DVU0082	-	hypothetical protein
83	 65.24	0	102105..102524	+	139	46578500	-	DVU0083	-	hypothetical protein
84	 65.91	0	102596..103648	-	350	46578501	-	DVU0084	-	aIF-2BI family translation initiation factor
85	 63.45	0	104165..105409	+	414	46578502	trpB-1	DVU0085	-	tryptophan synthase subunit beta
86	 60.36	0	105446..105667	-	73	46578503	-	DVU0086	-	hypothetical protein
87	 60.81	0	111902..112396	+	164	46578504	-	DVU0087	-	hypothetical protein
88	 63.58	0	112393..113880	+	495	46578505	panF	DVU0088	-	sodium/panthothenate symporter
89	 59.58	0	113936..114739	-	267	46578506	-	DVU0089	-	hypothetical protein
90	 62.86	0	115316..116287	+	323	46578507	wcaG	DVU0090	-	GDP-fucose synthetase
91	 58.92	0	116340..117062	+	240	46578508	-	DVU0091	-	hypothetical protein
92	 64.68	0	117119..120436	-	1105	46578509	-	DVU0092	-	sensory box histidine kinase
93	 64.63	0	120692..123142	-	816	46578510	-	DVU0093	-	glycosyl transferase domain-containing protein
94	 68.47	+1	123374..125536	+	720	46578511	-	DVU0094	-	methyl-accepting chemotaxis protein
95	 61.75	0	125677..126714	-	345	46578512	-	DVU0095	-	polyamine ABC transporter, periplasmic polyamine-binding protein
96	 63.82	0	126716..127489	-	257	46578513	potC	DVU0096	-	spermidine/putrescine ABC transporter membrane protein
97	 64.98	0	127492..128379	-	295	46578514	potB	DVU0097	-	polyamine ABC transporter, permease protein
98	 63.78	0	128366..129472	-	368	46578515	potA	DVU0098	-	putrescine/spermidine ABC transporter ATPase protein
99	 68.13	+1	129890..131050	-	386	46578516	-	DVU0099	-	TonB domain-containing protein
100	 63.13	0	131347..133296	+	649	46578517	-	DVU0100	-	TonB-dependent receptor
62.04	MEAN

5.68	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.