IslandPath Analysis: Natronomonas pharaonis DSM 2160



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.78   STD DEV: 3.85
Natronomonas pharaonis DSM 2160, complete genome - 1..2595221
2661 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 67.67	+1	6..1106	-	366	76800656	-	NP0002A	-	hypothetical protein
2	 66.30	0	1310..1861	+	183	76800657	-	NP0004A	-	hypothetical protein
3	 63.24	0	1933..3858	+	641	76800658	-	NP0006A	-	ABC-type transport system ATP-binding protein
4	 66.90	0	3961..4830	+	289	76800659	-	NP0008A	-	homolog 2 to lysine biosynthesis regulator/ribosomal protein S6 modification enzyme (glutaminyl transferase)
5	 62.93	0	4864..5238	-	124	76800660	hsp20_1	NP0010A	-	hsp20-type chaperone
6	 65.49	0	5289..6305	-	338	76800661	gapB	NP0012A	-	glyceraldehyde-3-phosphate dehydrogenase
7	 67.79	+1	6437..7414	+	325	76800662	pepB_1	NP0014A	-	aminopeptidase ( leucyl aminopeptidase, aminopeptidase T) 1
8	 64.98	0	7452..8102	+	216	76800663	-	NP0016A	-	hypothetical protein
9	 69.33	+1	8106..8744	+	212	76800664	pimT_1	NP0018A	-	protein-L-isoaspartate O-methyltransferase
10	 71.12	+1	8784..9524	+	246	76800665	pimT_2	NP0020A	-	protein-L-isoaspartate O-methyltransferase
11	 68.67	+1	9525..9974	-	149	76800666	-	NP0022A	-	hypothetical protein
12	 68.89	+1	10056..10415	+	119	76800667	crcB_2	NP0024A	-	protein crcB homolog 2
13	 69.23	+1	10403..10753	+	116	76800668	crcB_1	NP0026A	-	protein crcB homolog 1
14	 61.02	0	10790..11356	-	188	76800669	-	NP0028A	-	response regulator
15	 63.14	0	11497..12687	+	396	76800670	-	NP0030A	-	metalloprotease
16	 66.80	0	12688..13455	-	255	76800671	fadA_6	NP0032A	-	enoyl-CoA hydratase I 6
17	 66.67	0	13544..13870	+	108	76800672	-	NP0034A	-	hypothetical protein
18	 64.58	0	13872..14303	-	143	76800673	-	NP0036A	-	stress response protein
19	 60.52	0	14372..14908	-	178	76800674	msrA	NP0038A	-	methionine sulfoxide reductase A
20	 62.74	0	14974..16449	-	491	76800675	tp01_2	NP0040A	-	transport system 1 ( substrates cationic amino acids), subunit 2
21	 61.48	0	16562..18856	-	764	76800676	tp01_1	NP0042A	-	transporter system 1 ( substrates cationic amino acids), subunit 1
22	 61.19	0	18907..19326	-	139	76800677	-	NP0044A	-	hypothetical protein
23	 57.78	-1	19448..19627	-	59	76800678	-	NP0046A	-	hypothetical protein
24	 63.29	0	19733..20146	+	137	76800679	msrB	NP0048A	-	peptide methionine sulfoxide reductase (R-form specific)
25	 67.26	0	20186..20857	+	223	76800680	hcp_4	NP0050A	-	halocyanin 4
26	 65.19	0	20919..21731	+	270	76800681	moeB	NP0052A	-	molybdenum cofactor biosynthesis protein MoeB
27	 66.30	0	21724..22536	-	270	76800682	nadE_2	NP0054A	-	NAD(+) synthase (glutamine-hydrolyzing) 2
28	 63.22	0	22737..23171	-	144	76800683	-	NP0056A	-	stress response protein
29	 60.49	0	23247..23489	-	80	76800684	-	NP0058A	-	hypothetical protein
30	 61.33	0	23556..25034	-	492	76800685	hemAT	NP0060A	-	transducer protein hemAT
31	 65.94	0	25106..25519	-	137	76800686	-	NP0062A	-	hypothetical protein
32	 68.74	+1	25516..26430	-	304	76800687	-	NP0064A	-	iron(III ABC transporter periplasmic substrate-binding protein ABC transporter periplasmic substrate-binding protein 2
33	 65.12	0	26480..28222	-	580	76800688	argS	NP0066A	-	arginine--tRNA ligase
34	 60.96	0	28298..28840	-	180	76800689	-	NP0068A	-	hypothetical protein
35	 63.38	0	28975..29949	+	324	76800690	-	NP0070A	-	tRNA-modifying enzyme
36	 66.38	0	30086..30784	+	232	76800691	-	NP0072A	-	rib operon protein
37	 70.66	+1	30771..31496	+	241	76800692	ribB	NP0074A	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
38	 62.65	0	31534..32904	-	456	76800693	glnA_1	NP0076A	-	glutamate--ammonia ligase 1
39	 56.29	-1	33032..33484	+	150	76800694	-	NP0078A	-	transcription regulator
40	 64.58	0	33527..33814	+	95	76800695	-	NP0080A	-	hypothetical protein
41	 64.81	0	33811..34458	-	215	76800696	hisH	NP0082A	-	imidazole glycerol phosphate synthase subunit HisH
42	 68.03	+1	34551..35135	-	194	76800697	-	NP0084A	-	uracil-DNA glycosylase-like protein
43	 69.08	+1	35132..35752	-	206	76800698	-	NP0086A	-	hypothetical protein
44	 60.45	0	35749..35925	-	58	76800699	-	NP0088A	-	hypothetical protein
45	 65.39	0	36179..39163	+	994	76800700	-	NP0090A	-	signal-transducing histidine kinase
46	 62.75	0	39190..39801	+	203	76800701	-	NP0092A	-	hydrolase ( hydroxyacylglutathione hydrolase ) 8
47	 59.33	-1	39868..40017	-	49	76800702	rpl40e	NP0094A	-	50S ribosomal protein L40e
48	 63.95	0	40146..41546	+	466	76800703	srp54	NP0096A	-	signal recognition particle 54K protein
49	 67.45	0	41621..42901	+	426	76800704	-	NP0098A	-	hypothetical protein
50	 65.60	0	42888..43544	+	218	76800705	abc30a	NP0100A	-	macrolides/ lipoproteins ABC transporter ATP-binding protein
51	 66.40	0	43541..44668	+	375	76800706	abc30p	NP0102A	-	macrolides ABC transporter permease
52	 67.02	0	44722..46146	+	474	76800707	lpdA	NP0104A	-	dihydrolipoamide dehydrogenase
53	 64.68	0	46208..47011	+	267	76800708	pheA2	NP0106A	-	prephenate dehydratase
54	 59.21	-1	47225..47452	+	75	76800709	rpoH	NP0108A	-	DNA-directed RNA polymerase subunit H
55	 63.15	0	47449..49014	+	521	76800710	rpoB2	NP0110A	-	DNA-directed RNA polymerase subunit beta''
56	 63.12	0	49016..50848	+	610	76800711	rpoB1	NP0112A	-	DNA-directed RNA polymerase subunit B'
57	 63.74	0	50848..54027	+	1059	76800712	rpoA1	NP0114A	-	DNA-directed RNA polymerase subunit alpha
58	 62.46	0	54020..56704	+	894	76800713	rpoA2	NP0116A	-	DNA-directed RNA polymerase subunit A
59	 66.67	0	56711..57136	+	141	76800714	nusA	NP0118A	-	transcription elongation factor NusA-like protein
60	 63.11	0	57142..58068	-	308	76800715	tp37	NP0120A	-	zinc/cadmium/cations transporter
61	 62.00	0	58186..58614	+	142	76800716	rps12P	NP0122A	-	30S ribosomal protein S12P
62	 63.07	0	58614..59225	+	203	76800717	rps7	NP0124A	-	30S ribosomal protein S7P
63	 68.39	+1	59299..60636	+	445	76800718	-	NP0126A	-	glucose dehydrogenase 2, type B; L-sorbosone dehydrogenase 2
64	 63.62	0	60633..61388	-	251	76800719	-	NP0128A	-	hypothetical protein
65	 62.79	0	61538..63727	+	729	76800720	tef2	NP0130A	-	elongation factor EF-2
66	 63.94	0	63862..66135	+	757	76800721	mdh_1	NP0132A	-	malic enzyme
67	 64.39	0	66192..66542	+	116	76800722	-	NP0134A	-	transcription regulator
68	 64.56	0	66625..67287	+	220	76800723	-	NP0136A	-	DNA binding protein
69	 61.79	0	67270..68724	-	484	76800724	-	NP0138A	-	signal-transducing histidine kinase; response regulator
70	 63.33	0	68731..69210	-	159	76800725	-	NP0140A	-	response regulator
71	 65.78	0	69266..70954	-	562	76800726	-	NP0142A	-	signal-transducing histidine kinase
72	 63.49	0	70951..72837	-	628	76800727	-	NP0144A	-	signal-transducing histidine kinase
73	 69.41	+1	72886..73431	-	181	76800728	-	NP0146A	-	homolog 5 to transducer protein
74	 68.38	+1	73546..74070	-	174	76800729	-	NP0148A	-	hypothetical protein
75	 68.63	+1	74052..74459	-	135	76800730	-	NP0150A	-	hypothetical protein
76	 68.07	+1	74452..75093	-	213	76800731	-	NP0152A	-	hypothetical protein
77	 69.70	+1	75090..75551	-	153	76800732	-	NP0154A	-	hypothetical protein
78	 68.93	+1	75544..76251	-	235	76800733	-	NP0156A	-	hypothetical protein
79	 67.42	0	76248..78095	-	615	76800734	-	NP0158A	-	transmembrane protein (homolog 4 to type II secretion system proteins TadC)
80	 65.33	0	78201..80363	-	720	76800735	-	NP0160A	-	ATPase
81	 58.93	-1	80504..81214	+	236	76800736	-	NP0162A	-	DNA binding protein
82	 61.96	0	81268..82902	+	544	76800737	acs_5	NP0164A	-	acyl-CoA synthetase I 5
83	 62.45	0	82918..83652	-	244	76800738	abc09a1	NP0166A	-	branched chain amino acid ABC transporter ATP-binding protein
84	 60.00	0	83645..84424	-	259	76800739	abc09a2	NP0168A	-	branched chain amino acid ABC transporter ATP-binding protein
85	 61.21	0	84426..85562	-	378	76800740	abc09p2	NP0170A	-	branched-chain/neutral amino acids ABC transporter permease
86	 60.94	0	85559..86518	-	319	76800741	abc09p1	NP0172A	-	branched-chain/neutral amino acids ABC transporter permease
87	 60.74	0	86582..87898	-	438	76800742	abc09s	NP0174A	-	branched-chain/neutral amino acids amide ABC transporter periplasmic substrate-binding protein 5
88	 62.80	0	88031..88702	-	223	76800743	-	NP0176A	-	NAD(P)H nitroreductase
89	 63.50	0	88807..89910	-	367	76800744	aimE_2	NP0178A	-	amidase (aliphatic amidase) 2
90	 68.49	+1	89986..90369	-	127	76800745	-	NP0180A	-	hypothetical protein
91	 63.78	0	90374..91480	-	368	76800746	ftsY	NP0182A	-	signal recognition particle receptor SRalpha
92	 63.38	0	91488..91943	-	151	76800747	pfdA	NP0184A	-	prefoldin alpha subunit
93	 62.07	0	91940..92113	-	57	76800748	rplX	NP0186A	-	50S ribosomal protein LX
94	 63.67	0	92336..94036	+	566	76800749	-	NP0188A	-	signal-transducing histidine kinase/response regulator
95	 68.24	+1	94020..94910	-	296	76800750	-	NP0190A	-	homolog 1 to phosphatidylglycerophosphatase
96	 69.27	+1	94907..96214	-	435	76800751	-	NP0192A	-	hypothetical protein
97	 67.57	0	96272..97372	-	366	76800752	trm1	NP0194A	-	N(2),N(2)-dimethylguanosine tRNA methyltransferase
98	 63.02	0	97405..97815	+	136	76800753	-	NP0196A	-	hypothetical protein
99	 64.78	0	97816..99669	-	617	76800754	-	NP0198A	-	ATPase
100	 69.61	+1	99766..100512	+	248	76800755	-	NP0200A	-	homolog to acetylornithine deacetylase
63.78	MEAN

3.85	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.