IslandPath Analysis: Bordetella bronchiseptica RB50



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.04   STD DEV: 4.23
Bordetella bronchiseptica RB50, complete genome - 1..5339179
4994 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.34	-1	1..1920	+	639	33598994	gidA	BB0001	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2	 65.24	0	1917..2549	+	210	33598995	gidB	BB0002	-	glucose inhibited division protein B
3	 62.16	-1	2546..3343	+	265	33598996	parA	BB0003	-	ParA family protein
4	 68.15	0	3350..4156	+	268	33598997	-	BB0004	-	GNAT family acetyltransferase
5	 67.76	0	4200..5117	+	305	33598998	parB	BB0005	-	chromosome partitioning protein ParB
6	 71.36	0	5110..6111	+	333	33598999	ansB	BB0006	-	L-asparaginase II precursor
7	 62.64	-1	6707..7897	+	396	33599000	tuf	BB0007	-	elongation factor Tu
8	 58.79	-2	8136..8516	+	126	33599001	secE	BB0008	-	preprotein translocase subunit SecE
9	 54.49	-2	8526..9059	+	177	33599002	nusG	BB0009	-	transcription antitermination protein NusG
10	 63.43	-1	9123..9554	+	143	33599003	rplK	BB0010	-	50S ribosomal protein L11
11	 64.52	0	9557..10255	+	232	33599004	rplA	BB0011	-	50S ribosomal protein L1
12	 61.33	-1	10498..11022	+	174	33599005	rplJ	BB0012	-	50S ribosomal protein L10
13	 62.76	-1	11104..11487	+	127	33599006	rplL	BB0013	-	50S ribosomal protein L7/L12
14	 63.28	-1	11623..15759	+	1378	33599007	rpoB	BB0014	-	DNA-directed RNA polymerase subunit beta
15	 64.19	0	15759..20003	+	1414	33599008	rpoC	BB0015	-	DNA-directed RNA polymerase subunit beta'
16	 65.68	0	20112..20516	-	134	33599009	-	BB0016	-	putative lipoprotein
17	 71.61	0	20757..21989	+	410	33599010	-	BB0017	-	hypothetical protein
18	 68.41	0	22005..24350	-	781	33599011	-	BB0018	-	two-component sensor protein
19	 68.20	0	24352..25458	-	368	33599012	-	BB0019	-	putative peptidoglycan binding protein
20	 62.99	-1	25476..26210	-	244	33599013	-	BB0020	-	two-component response regulator
21	 68.76	0	26468..27280	+	270	33599014	-	BB0021	-	two-component response regulator
22	 66.45	0	27310..28245	-	311	33599015	-	BB0022	-	putative metal transporter
23	 63.77	-1	28251..28526	-	91	33599016	-	BB0023	-	hypothetical protein
24	 61.11	-1	29103..29480	+	125	161609284	rpsL	BB0024	-	30S ribosomal protein S12
25	 60.08	-1	29644..30114	+	156	33599018	rpsG	BB0025	-	30S ribosomal protein S7
26	 62.77	-1	30132..32234	+	700	33599019	fusA	BB0026	-	elongation factor G
27	 62.64	-1	32311..33501	+	396	33599020	tuf	BB0027	-	elongation factor Tu
28	 60.26	-1	33565..33876	+	103	33599021	rpsJ	BB0028	-	30S ribosomal protein S10
29	 65.51	0	34234..34923	+	229	161609283	rplC	BB0029	-	50S ribosomal protein L3
30	 61.49	-1	34928..35545	+	205	33599023	rplD	BB0030	-	50S ribosomal protein L4
31	 56.57	-2	35542..35838	+	98	33599024	rplW	BB0031	-	50S ribosomal protein L23
32	 64.86	0	35839..36666	+	275	33599025	rplB	BB0032	-	50S ribosomal protein L2
33	 57.61	-2	36679..36954	+	91	33599026	rpsS	BB0033	-	30S ribosomal protein S19
34	 57.27	-2	36958..37287	+	109	33599027	rplV	BB0034	-	50S ribosomal protein L22
35	 63.38	-1	37297..38088	+	263	33599028	rpsC	BB0035	-	30S ribosomal protein S3
36	 63.31	-1	38091..38507	+	138	33599029	rplP	BB0036	-	50S ribosomal protein L16
37	 60.42	-1	38518..38709	+	63	33599030	rpmC	BB0037	-	50S ribosomal protein L29
38	 57.80	-2	38711..38992	+	93	33599031	rpsQ	BB0038	-	30S ribosomal protein S17
39	 68.87	0	39159..40022	-	287	33599032	-	BB0039	-	putative hydrolase
40	 66.18	0	40109..41536	-	475	33599033	-	BB0040	-	putative aldehyde dehydrogenase
41	 60.43	-1	42435..42803	+	122	33599034	rplN	BB0041	-	50S ribosomal protein L14
42	 62.93	-1	42814..43134	+	106	33599035	rplX	BB0042	-	50S ribosomal protein L24
43	 57.96	-2	43147..43686	+	179	33599036	rplE	BB0043	-	50S ribosomal protein L5
44	 59.15	-2	43699..44004	+	101	33599037	rpsN	BB0044	-	30S ribosomal protein S14
45	 61.11	-1	44015..44410	+	131	33599038	rpsH	BB0045	-	30S ribosomal protein S8
46	 60.30	-1	44421..44954	+	177	33599039	rplF	BB0046	-	50S ribosomal protein L6
47	 64.46	0	44976..45338	+	120	33599040	rplR	BB0047	-	50S ribosomal protein L18
48	 62.10	-1	45354..45878	+	174	33599041	rpsE	BB0048	-	30S ribosomal protein S5
49	 62.37	-1	45882..46067	+	61	33599042	rpmD	BB0049	-	50S ribosomal protein L30
50	 65.99	0	46077..46517	+	146	33599043	rplO	BB0050	-	50S ribosomal protein L15
51	 60.78	-1	46532..47857	+	441	33599044	secY	BB0051	-	preprotein translocase subunit SecY
52	 54.79	-2	47867..48085	+	72	33599045	infA	BB0052	-	translation initiation factor IF-1
53	 53.51	-2	48120..48233	+	37	33599046	rpmJ	BB0053	-	50S ribosomal protein L36
54	 62.57	-1	48275..48640	+	121	33599047	rpsM	BB0054	-	30S ribosomal protein S13
55	 63.68	-1	48656..49057	+	133	33599048	rpsK	BB0055	-	30S ribosomal protein S11
56	 63.14	-1	49069..49692	+	207	33599049	rpsD	BB0056	-	30S ribosomal protein S4
57	 63.53	-1	49907..50893	+	328	33599050	rpoA	BB0057	-	DNA-directed RNA polymerase subunit alpha
58	 61.87	-1	51052..51447	+	131	33599051	rplQ	BB0058	-	50S ribosomal protein L17
59	 63.47	-1	51576..52013	-	145	33599052	-	BB0059	-	histidine triad protein
60	 61.70	-1	52120..52461	+	113	33599053	cutA	BB0060	-	putative periplasmic divalent cation tolerance protein
61	 70.43	0	52472..54409	+	645	33599054	-	BB0061	-	thiol:disulfide interchange protein
62	 69.46	0	54450..55487	+	345	33599055	-	BB0062	-	hypothetical protein
63	 66.67	0	55484..56500	-	338	33599056	hemB	BB0063	-	delta-aminolevulinic acid dehydratase
64	 64.74	0	56497..57120	-	207	33599057	-	BB0064	-	GTPase EngB
65	 66.10	0	57344..58045	+	233	33599058	-	BB0065	-	putative cytochrome C precursor
66	 66.67	0	58164..60260	+	698	33599059	-	BB0066	-	hypothetical protein
67	 66.82	0	60270..61604	+	444	33599060	-	BB0067	-	putative cytochrome c asssembly protein
68	 68.99	0	61675..62964	-	429	33599061	lysA	BB0068	-	diaminopimelate decarboxylase
69	 64.24	0	63178..63507	+	109	33599062	cyaY	BB0069	-	hypothetical protein
70	 66.54	0	63564..66008	-	814	33599063	-	BB0070	-	penicillin-binding protein 1A
71	 66.04	0	66122..66757	+	211	33599064	aroK	BB0071	-	shikimate kinase
72	 69.82	0	66757..67833	+	358	33599065	aroB	BB0072	-	3-dehydroquinate synthase
73	 67.19	0	67830..68984	+	384	33599066	-	BB0073	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
74	 69.24	0	69158..69817	-	219	33599067	-	BB0074	-	putative glutathione S-transferase
75	 67.86	0	69874..72732	-	952	33599068	uvrA	BB0075	-	excinuclease ABC subunit A
76	 72.83	+1	72888..74072	+	394	33599069	-	BB0076	-	putative transport protein
77	 68.06	0	74305..74805	+	166	33599070	ssb	BB0077	-	single-strand binding protein
78	 64.96	0	75038..77152	+	704	33599071	bfrC	BB0078	-	ferric siderophore receptor
79	 69.25	0	77289..77792	+	167	33599072	-	BB0079	-	hypothetical protein
80	 66.28	0	77811..78590	+	259	33599073	-	BB0080	-	putative aldolase
81	 70.30	0	78619..79635	+	338	33599074	-	BB0081	-	hypothetical protein
82	 65.79	0	79689..80483	+	264	33599075	-	BB0082	-	GntR family regulatory proteins
83	 69.53	0	80480..81421	-	313	33599076	-	BB0083	-	transcriptional regulator
84	 67.87	0	81701..83191	+	496	33599077	-	BB0084	-	N-ethylammeline chlorohydrolase
85	 69.00	0	83230..84216	+	328	33599078	-	BB0085	-	hypothetical protein
86	 68.67	0	84369..85514	+	381	33599079	-	BB0086	-	putative glycosyl transferase
87	 68.62	0	85521..86339	+	272	33599080	-	BB0087	-	hypothetical protein
88	 67.70	0	86499..87470	+	323	33599081	-	BB0088	-	LysR family regulatory protein
89	 69.06	0	87496..88497	+	333	33599082	-	BB0089	-	periplasmic solute-binding protein
90	 63.29	-1	88561..89331	+	256	33599083	-	BB0090	-	ABC transport system permease protein
91	 63.51	-1	89319..90110	+	263	33599084	-	BB0091	-	ABC transporter ATP-binding protein
92	 68.19	0	90138..91454	+	438	33599085	-	BB0092	-	hypothetical protein
93	 62.43	-1	91591..91779	-	62	33599086	-	BB0093	-	hypothetical protein
94	 67.75	0	91788..92432	-	214	33599087	-	BB0094	-	TetR family transcriptional regulator
95	 68.96	0	92468..94645	-	725	33599088	glcB	BB0095	-	malate synthase G
96	 67.45	0	94889..95653	+	254	33599089	glcC	BB0096	-	DNA-binding transcriptional regulator GlcC
97	 68.71	0	95650..96777	-	375	33599090	-	BB0097	-	putative dehydrogenase
98	 68.73	0	97002..97388	-	128	33599091	-	BB0098	-	hypothetical protein
99	 67.75	0	97654..98580	-	308	33599092	ubiA	BB0099	-	4-hydroxybenzoate octaprenyltransferase
100	 67.00	0	98667..99866	-	399	33599093	-	BB0100	-	putative aminotransferase
68.04	MEAN

4.23	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.