IslandPath Analysis: Acholeplasma laidlawii PG-8A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.96   STD DEV: 2.88
Acholeplasma laidlawii PG-8A, complete genome - 1..1496992
1380 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 31.49	0	289..1647	+	452	162446889	dnaA	ACL_0001	-	chromosomal replication initiator protein
2	 44.75	+2	2010..3218	-	402	162446890	-	ACL_0003	-	IS-10 transposase
3	 31.94	0	4478..4693	+	71	162446891	-	ACL_0004	-	hypothetical protein
4	 28.76	-1	4690..5739	+	349	162446892	recF	ACL_0005	-	DNA replication and repair protein
5	 34.80	0	5729..7636	+	635	162446893	gyrB	ACL_0006	-	DNA gyrase, subunit B
6	 33.53	0	7655..10258	+	867	162446894	gyrA	ACL_0007	-	DNA gyrase, subunit A
7	 32.64	0	10606..12924	+	772	162446895	-	ACL_0008	-	ABC-type transport system, ATPase and permease components
8	 32.23	0	13187..14458	+	423	162446896	serS	ACL_0009	-	seryl-tRNA synthetase
9	 30.26	0	14659..15309	+	216	162446897	-	ACL_0010	-	two-component response transcriptional regulator
10	 30.52	0	15306..16622	+	438	162446898	-	ACL_0011	-	two-component sensory histidine kinase
11	 30.70	0	16603..17019	-	138	162446899	-	ACL_0012	-	histidine triad (HIT) superfamily protein
12	 36.38	+1	17124..17714	+	196	162446900	pduL	ACL_0013	-	propanediol utilization protein
13	 30.93	0	17764..18969	+	401	162446901	-	ACL_0014	-	HD phosphohydrolase superfamily protein
14	 31.11	0	18966..19505	+	179	162446902	-	ACL_0015	-	primase-like protein
15	 29.28	0	19492..20280	+	262	162446903	ksgA	ACL_0016	-	dimethyladenosine transferase
16	 37.54	+1	20491..20775	+	94	162446904	-	ACL_0017	-	hypothetical protein
17	 35.40	+1	20972..21937	+	321	162446905	prsA	ACL_0018	-	ribose-phosphate pyrophosphokinase
18	 33.85	0	21937..22512	+	191	162446906	pth	ACL_0019	-	peptidyl-tRNA hydrolase
19	 31.61	0	22548..25979	+	1143	162446907	mfd	ACL_0020	-	transcription-repair coupling factor
20	 33.08	0	25972..27159	+	395	162446908	-	ACL_0021	-	hypothetical protein
21	 32.15	0	27232..28413	+	393	162446909	tyrB	ACL_0022	-	aromatic-amino-acid transaminase
22	 32.68	0	28419..29027	+	202	162446910	lacA	ACL_0023	-	galactoside O-acetyltransferase
23	 25.74	-2	29011..29313	+	100	162446911	-	ACL_0024	-	integral membrane protein
24	 30.88	0	29333..30841	+	502	162446912	cls	ACL_0025	-	phosphatidylserine/phosphatidylglycerophosphate synthase
25	 27.92	-1	30896..31135	+	79	162446913	-	ACL_0026	-	hypothetical protein
26	 31.69	0	31191..32165	-	324	162446914	-	ACL_0027	-	kinase
27	 33.60	0	32364..34634	+	756	162446915	pfl	ACL_0028	-	pyruvate formate lyase
28	 31.76	0	34621..35382	+	253	162446916	pflA	ACL_0029	-	pyruvate formate lyase activating enzyme
29	 28.45	-1	35535..36230	+	231	162446917	-	ACL_0030	-	Crp/FNR family transcriptional regulator
30	 27.75	-1	36292..36990	+	232	162446918	-	ACL_0031	-	hypothetical protein
31	 32.89	0	37086..38669	+	527	162446919	fhs	ACL_0032	-	formyltetrahydrofolate synthetase
32	 32.49	0	38669..39502	+	277	162446920	folD	ACL_0033	-	methylenetetrahydrofolate dehydrogenase (NADP+)
33	 32.16	0	40937..41956	+	339	162446921	-	ACL_0035	-	LacI family transcription regulator
34	 36.28	+1	41986..43377	+	463	162446922	-	ACL_0036	-	hypothetical protein
35	 31.77	0	43497..44456	+	319	162446923	-	ACL_0037	-	ABC-type transport system, permease component
36	 29.92	0	44453..45331	+	292	162446924	-	ACL_0038	-	ABC-type transport system, permease component
37	 33.00	0	45347..47767	+	806	162446925	-	ACL_0039	-	hypothetical protein
38	 34.24	0	47863..48303	-	146	162446926	-	ACL_0040	-	OsmC-like protein
39	 33.37	0	48492..51095	+	867	162446927	-	ACL_0041	-	hypothetical protein
40	 34.20	0	51200..54661	+	1153	162446928	-	ACL_0042	-	hypothetical protein
41	 33.89	0	54835..55377	+	180	162446929	ppa	ACL_0043	-	inorganic pyrophosphatase
42	 34.58	0	55383..56102	+	239	162446930	-	ACL_0044	-	hypothetical protein
43	 31.02	0	56262..56564	+	100	162446931	-	ACL_0045	-	hypothetical protein
44	 33.33	0	56561..56692	+	43	162446932	-	ACL_0046	-	hypothetical protein
45	 33.90	0	57170..58399	+	409	162446933	glyA	ACL_0047	-	glycine hydroxymethyltransferase
46	 34.33	0	58416..59714	+	432	162446934	rnfC	ACL_0048	-	NADH oxidoreductase complex RnfABCDGE type, C subunit
47	 34.08	0	59717..60787	+	356	162446935	rnfD	ACL_0049	-	NADH oxidoreductase complex RnfABCDGE type, D subunit
48	 32.70	0	60784..61725	+	313	162446936	-	ACL_0050	-	hypothetical protein
49	 31.59	0	61722..62639	+	305	162446937	-	ACL_0051	-	hypothetical protein
50	 30.05	0	62641..63219	+	192	162446938	rnfE	ACL_0052	-	NADH oxidoreductase complex RnfABCDGE type, E subunit
51	 28.85	-1	63209..63766	+	185	162446939	-	ACL_0053	-	integral membrane protein
52	 31.86	0	63791..64873	+	360	162446940	apbE	ACL_0054	-	thiamine biosynthesis lipoprotein
53	 35.05	+1	64886..65350	+	154	162446941	-	ACL_0055	-	hypothetical protein
54	 33.33	0	65347..65856	+	169	162446942	-	ACL_0056	-	integral membrane protein
55	 31.01	0	66016..66273	+	85	162446943	rpmE	ACL_0057	-	large subunit ribosomal protein L31
56	 37.37	+1	66334..66927	+	197	162446944	tdk	ACL_0058	-	thymidine kinase
57	 36.73	+1	66914..67354	+	146	162446945	-	ACL_0059	-	Zn dependent nucleoside deaminase
58	 31.27	0	67563..68240	+	225	162446946	-	ACL_0061	-	hypothetical protein
59	 34.87	+1	68248..70203	+	651	162446947	tktA	ACL_0062	-	transketolase
60	 34.30	0	70225..72078	+	617	162446948	gidA	ACL_0063	-	glucose inhibited division protein A
61	 33.33	0	72071..72763	+	230	162446949	gidB	ACL_0064	-	glucose inhibited division protein B
62	 32.75	0	72775..72945	+	56	162446950	-	ACL_0065	-	hypothetical protein
63	 31.96	0	79368..79730	+	120	162446951	-	ACL_0081	-	hypothetical protein
64	 34.97	+1	79873..80727	+	284	162446952	mmsB	ACL_0082	-	3-hydroxyisobutyrate dehydrogenase
65	 31.21	0	80836..81684	+	282	162446953	-	ACL_0083	-	degV family protein
66	 29.22	0	81696..82133	+	145	162446954	-	ACL_0084	-	MarR family transcriptional regulator
67	 29.20	0	82489..83697	+	402	162446955	-	ACL_0085	-	hypothetical protein
68	 33.01	0	83907..84215	+	102	162446956	rpsJ	ACL_0086	-	small subunit ribosomal protein S10
69	 36.78	+1	84261..84899	+	212	162446957	rplC	ACL_0087	-	large subunit ribosomal protein L3
70	 38.14	+2	84911..85534	+	207	162446958	rplD	ACL_0088	-	large subunit ribosomal protein L4
71	 33.99	0	85534..85836	+	100	162446959	rplW	ACL_0089	-	large subunit ribosomal protein L23
72	 38.99	+2	85868..86698	+	276	162446960	rplB	ACL_0090	-	large subunit ribosomal protein L2
73	 37.28	+1	86711..86989	+	92	162446961	rpsS	ACL_0091	-	small subunit ribosomal protein S19
74	 38.10	+2	87002..87337	+	111	162446962	rplV	ACL_0092	-	large subunit ribosomal protein L22
75	 35.54	+1	87345..88115	+	256	162446963	rpsC	ACL_0093	-	small subunit ribosomal protein S3
76	 38.85	+2	88121..88537	+	138	162446964	rplP	ACL_0094	-	large subunit ribosomal protein L16
77	 32.80	0	88534..88722	+	62	162446965	rpmC	ACL_0095	-	large subunit ribosomal protein L29
78	 31.06	0	88737..89000	+	87	162446966	rpsQ	ACL_0096	-	small subunit ribosomal protein S17
79	 39.30	+2	89019..89387	+	122	162446967	rplN	ACL_0097	-	large subunit ribosomal protein L14
80	 35.66	+1	89401..89916	+	171	162446968	rplX	ACL_0098	-	large subunit ribosomal protein L24
81	 34.07	0	89916..90458	+	180	162446969	rplE	ACL_0099	-	large subunit ribosomal protein L5
82	 37.04	+1	90469..90738	+	89	162446970	rpsN	ACL_0100	-	small subunit ribosomal protein S14
83	 35.61	+1	90751..91146	+	131	162446971	rpsH	ACL_0101	-	small subunit ribosomal protein S8
84	 34.44	0	91165..91704	+	179	162446972	rplF	ACL_0102	-	large subunit ribosomal protein L6
85	 38.18	+2	91717..92067	+	116	162446973	rplR	ACL_0103	-	large subunit ribosomal protein L18
86	 39.25	+2	92082..92588	+	168	162446974	rpsE	ACL_0104	-	small subunit ribosomal protein S5
87	 33.91	0	92593..92766	+	57	162446975	rpmD	ACL_0105	-	large subunit ribosomal protein L30
88	 39.23	+2	92778..93218	+	146	162446976	rplO	ACL_0106	-	large subunit ribosomal protein L15
89	 35.18	+1	93220..94518	+	432	162446977	secY	ACL_0107	-	preprotein translocase, SecY subunit
90	 34.40	0	94518..95171	+	217	162446978	adk	ACL_0108	-	adenylate kinase
91	 37.70	+1	95168..95923	+	251	162446979	-	ACL_0109	-	methionine aminopeptidase
92	 36.07	+1	95926..96144	+	72	162446980	infA	ACL_0110	-	translation initiation factor IF-1
93	 39.32	+2	96157..96273	+	38	162446981	rpmJ	ACL_0111	-	large subunit ribosomal protein L36
94	 38.93	+2	96286..96660	+	124	162446982	rpsM	ACL_0112	-	small subunit ribosomal protein S13
95	 40.20	+2	96663..97055	+	130	162446983	rpsK	ACL_0113	-	small subunit ribosomal protein S11
96	 35.05	+1	97079..98071	+	330	162446984	rpoA	ACL_0114	-	DNA-directed RNA polymerase, alpha subunit
97	 40.83	+2	98077..98436	+	119	162446985	rplQ	ACL_0115	-	large subunit ribosomal protein L17
98	 33.33	0	98654..99130	+	158	162446986	-	ACL_0116	-	hypothetical protein
99	 31.11	0	99217..101460	+	747	162446987	-	ACL_0117	-	surface-anchored extracellular endonuclease, putative
100	 29.95	0	101444..102004	+	186	162446988	tag	ACL_0118	-	DNA-3-methyladenine glycosylase I
31.96	MEAN

2.88	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.