IslandPath Analysis: Sinorhizobium meliloti 1021



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.01   STD DEV: 2.98
Sinorhizobium meliloti 1021, complete genome - 1..3654135
3360 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 61.44	0	478..1299	+	273	15963754	-	SMc02793	-	hypothetical protein
2	 61.50	0	1347..1946	+	199	15963755	maf	SMc02792	-	Maf-like protein
3	 62.14	0	1939..2799	+	286	15963756	aroE	SMc02791	-	shikimate 5-dehydrogenase
4	 64.44	0	2796..3380	+	194	15963757	coaE	SMc02790	-	dephospho-CoA kinase
5	 63.24	0	3574..4302	+	242	15963758	dnaQ	SMc02789	-	DNA polymerase III subunit epsilon
6	 62.72	0	4408..4914	-	168	15963759	secB	SMc02788	-	preprotein translocase subunit SecB
7	 65.10	0	5082..5657	-	191	15963760	-	SMc02787	-	hypothetical protein
8	 58.69	-1	5792..6493	+	233	15963761	-	SMc02786	-	putative translocase transmembrane protein
9	 65.42	0	6511..7629	+	372	15963762	-	SMc02785	-	putative lytic murein transglycosylase A protein
10	 67.02	+1	7622..8188	+	188	15963763	-	SMc02784	-	hypothetical protein
11	 61.90	0	8185..8562	+	125	15963764	-	SMc02783	-	hypothetical protein
12	 63.42	0	8697..11132	+	811	15963765	gyrB	SMc02782	-	DNA gyrase subunit B
13	 64.32	0	11232..11828	-	198	15963766	-	SMc02781	-	putative oxidoreductase protein
14	 64.81	0	11996..13450	+	484	15963767	gabD1	SMc02780	-	succinate-semialdehyde dehydrogenase [NADP+] protein
15	 61.90	0	13646..14611	-	321	15963768	TRm19	SMc02779	-	transposase
16	 66.17	+1	14893..15693	+	266	15963769	-	SMc02778	-	putative hydroxyacid aldolase protein
17	 62.57	0	15706..16584	-	292	15963770	-	SMc02777	-	putative transcription regulator protein
18	 66.93	+1	16752..18257	+	501	15963771	-	SMc02776	-	putative altronate hydrolase protein
19	 64.80	0	18314..19333	+	339	15963772	-	SMc02775	-	putative L-fucose dehydrogenase (D-threo aldose 1-dehydrogenase) protein
20	 63.64	0	19442..20431	+	329	15963773	-	SMc02774	-	ABC transporter periplasmic-binding protein
21	 63.90	0	20543..22096	+	517	15963774	-	SMc02773	-	putative ABC transporter ATP-binding protein
22	 63.79	0	22130..23104	+	324	15963775	-	SMc02772	-	putative sugar ABC transporter permease protein
23	 67.55	+1	23151..24167	+	338	15963776	-	SMc02771	-	putative zinc-type alcohol dehydrogenase protein
24	 62.59	0	24435..25709	+	424	15963777	-	SMc02770	-	hypothetical protein
25	 60.09	0	25859..26284	+	141	15963778	-	SMc02769	-	hypothetical protein
26	 64.55	0	26383..27138	+	251	15963779	-	SMc02768	-	hypothetical protein
27	 62.65	0	27376..28023	+	215	15963780	trpF	SMc02767	-	N-(5'-phosphoribosyl)anthranilate isomerase
28	 62.90	0	28048..29268	+	406	15963781	trpB	SMc02766	-	tryptophan synthase subunit beta
29	 66.79	+1	29274..30113	+	279	15963782	trpA	SMc02765	-	tryptophan synthase subunit alpha
30	 62.62	0	30167..31081	+	304	15963783	accD	SMc02764	-	acetyl-CoA carboxylase subunit beta
31	 66.67	+1	31097..32440	+	447	15963784	folC	SMc02763	-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase
32	 61.60	0	32788..33951	+	387	15963785	TRm22	SMc02762	-	transposase
33	 59.57	-1	34091..34414	-	107	15963786	trxA	SMc02761	-	thioredoxin protein
34	 67.03	+1	34496..38065	-	1189	15963787	-	SMc02760	-	putative ATP-dependent nuclease/helicase protein
35	 67.52	+1	38055..41234	-	1059	15963788	-	SMc02759	-	hypothetical protein
36	 64.34	0	41236..41967	-	243	15963789	-	SMc02758	-	putative nucleotidyl transferase protein
37	 63.56	0	41974..43488	-	504	15963790	-	SMc02757	-	hypothetical protein
38	 64.37	0	43498..45978	-	826	15963791	-	SMc02756	-	putative sensor histidine kinase protein
39	 62.96	0	46280..47680	-	466	15963792	ahcY	SMc02755	-	S-adenosyl-L-homocysteine hydrolase
40	 64.60	0	47837..48127	-	96	15963793	-	SMc02754	-	putative phosphocarrier HPr transmembrane protein
41	 59.95	-1	48127..48528	-	133	15963794	-	SMc02753	-	putative IIA component of PTS system protein
42	 66.67	+1	48809..49255	-	148	15963795	-	SMc02752	-	hypothetical protein
43	 65.10	0	49252..51039	-	595	15963796	chvG	SMc04446	-	histidine kinase sensory transmembrane protein
44	 63.62	0	51419..52141	-	240	15963797	chvI	SMc02560	-	transcriptional regulatory protein
45	 64.80	0	52483..54093	+	536	15963798	pckA	SMc02562	-	phosphoenolpyruvate carboxykinase
46	 65.52	0	54197..54631	+	144	15963799	-	SMc02563	-	hypothetical protein
47	 61.81	0	54717..55190	+	157	15963800	-	SMc02564	-	hypothetical protein
48	 67.47	+1	55295..55915	+	206	15963801	alkB	SMc02566	-	alkylated DNA repair protein
49	 61.75	0	56529..57524	-	331	15963802	coaA	SMc02567	-	pantothenate kinase
50	 62.35	0	57521..57844	-	107	15963803	hisE	SMc02568	-	phosphoribosyl-ATP pyrophosphatase
51	 64.99	0	57909..58685	-	258	15963804	hisF	SMc02569	-	imidazole glycerol phosphate synthase subunit HisF
52	 65.99	+1	58682..59425	-	247	15963805	hisA	SMc02570	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
53	 66.82	+1	59458..60108	-	216	15963806	hisH	SMc02572	-	imidazole glycerol phosphate synthase subunit HisH
54	 64.98	0	60108..60581	-	157	15963807	-	SMc02573	-	hypothetical protein
55	 64.37	0	60608..61216	-	202	15963808	hisB	SMc02574	-	imidazoleglycerol-phosphate dehydratase
56	 63.62	0	61537..62094	+	185	15963809	hslV	SMc02575	-	ATP-dependent protease peptidase subunit
57	 64.37	0	62084..62605	+	173	15963810	-	SMc02576	-	acetyltransferase
58	 65.21	0	62602..63909	+	435	15963811	hslU	SMc02577	-	ATP-dependent protease ATP-binding subunit
59	 63.83	0	64116..65066	+	316	15963812	-	SMc02578	-	hypothetical protein
60	 64.74	0	65218..66618	+	466	15963813	-	SMc02579	-	putative cytochrome P450 monooxygenase protein
61	 68.16	+1	66749..68755	+	668	15963814	-	SMc02580	-	hypothetical protein
62	 64.78	0	68916..71087	+	723	15963815	glcB	SMc02581	-	malate synthase G
63	 63.08	0	71294..72130	-	278	15963816	-	SMc02582	-	hypothetical protein
64	 64.76	0	72194..72718	+	174	15963817	-	SMc02583	-	hypothetical protein
65	 64.44	0	72733..73317	-	194	15963818	actR	SMc02584	-	transcription regulator protein
66	 65.44	0	73504..74805	-	433	15963819	actS	SMc02585	-	sensor histidine kinase transmembrane protein
67	 68.57	+1	74986..77448	-	820	15963820	helO	SMc02586	-	ATP-dependent helicase protein
68	 66.96	+1	77448..78131	-	227	15963821	-	SMc02587	-	ABC transporter ATP-binding protein
69	 66.61	+1	78132..79820	-	562	15963822	-	SMc02588	-	ABC transporter permease
70	 64.38	0	79804..81030	-	408	15963823	-	SMc02589	-	hypothetical protein
71	 65.59	0	88119..89423	+	434	15963824	-	SMc02590	-	hypothetical protein
72	 67.41	+1	89374..89913	-	179	15963825	-	SMc02591	-	hypothetical protein
73	 66.33	+1	89910..90503	-	197	15963826	-	SMc02592	-	hypothetical protein
74	 65.24	0	90500..91132	-	210	15963827	-	SMc02593	-	hypothetical protein
75	 62.18	0	91222..91890	-	222	15963828	-	SMc02594	-	hypothetical protein
76	 62.43	0	91920..93146	-	408	15963829	metB	SMc02595	-	cystathionine gamma-synthase protein
77	 59.62	-1	93287..94138	+	283	15963830	-	SMc02596	-	putative transcription regulator protein
78	 52.10	-2	94214..94570	+	118	15963831	-	SMc04463	-	hypothetical protein
79	 61.53	0	94619..95767	-	382	15963832	-	SMc02600	-	hypothetical protein
80	 60.27	0	96049..96345	+	98	15963833	-	SMc02602	-	hypothetical protein
81	 61.56	0	96439..97359	-	306	15963834	folD1	SMc02604	-	bifunctional methylenetetrahydrofolate dehydrogenase/ methenyltetrahydrofolate cyclohydrolase
82	 63.67	0	97382..97915	-	177	15963835	soxG	SMc02605	-	putative sarcosine oxidase gamma subunit protein
83	 65.55	0	97908..100871	-	987	15963836	soxA1	SMc02606	-	putative sarcosine oxidase alpha subunit transmembrane protein
84	 66.31	+1	100868..101146	-	92	15963837	soxD	SMc02607	-	sarcosine oxidase delta subunit protein
85	 64.19	0	101172..102422	-	416	15963838	soxB	SMc02608	-	sarcosine oxidase beta subunit protein
86	 66.26	+1	102517..103491	+	324	15963839	glxA	SMc02609	-	putative transcription regulator protein
87	 62.51	0	103542..104504	+	320	15963840	glxB	SMc02610	-	putative amidotransferase protein
88	 60.41	0	104542..105228	+	228	15963841	glxC	SMc02611	-	putative oxidoreductase protein
89	 64.64	0	105243..106571	+	442	15963842	glxD	SMc02612	-	putative oxidoreductase protein
90	 61.24	0	106653..107960	+	435	15963843	glnT	SMc02613	-	glutamine synthetase III protein
91	 64.02	0	108064..108327	-	87	15963844	-	SMc02614	-	hypothetical protein
92	 67.20	+1	108352..109095	-	247	15963845	-	SMc02615	-	putative signal peptide protein
93	 63.09	0	109201..110598	-	465	15963846	-	SMc02616	-	putative permease transmembrane protein
94	 61.11	0	110613..110774	-	53	15963847	-	SMc02617	-	hypothetical protein
95	 61.72	0	110788..111171	-	127	15963848	-	SMc02618	-	hypothetical protein
96	 58.49	-1	111180..111497	-	105	15963849	-	SMc02619	-	hypothetical protein
97	 62.57	0	111802..112533	+	243	15963850	-	SMc02620	-	hypothetical protein
98	 60.83	0	112737..113627	+	296	195970220	purU	SMc04154	-	formyltetrahydrofolate deformylase
99	 60.80	0	113903..114958	+	351	15963852	-	SMc04153	-	putative aminomethyltransferase protein
100	 65.51	0	114969..115574	+	201	15963853	-	SMc04152	-	hypothetical protein
63.01	MEAN

2.98	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.