IslandPath Analysis: Herpetosiphon aurantiacus ATCC 23779



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.64   STD DEV: 4.00
Herpetosiphon aurantiacus ATCC 23779, complete genome - 1..6346587
4976 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 50.67	0	77..1495	+	472	159896534	-	Haur_0001	-	chromosomal replication initiator protein DnaA
2	 45.69	-1	1544..3412	-	622	159896535	-	Haur_0002	-	hypothetical protein
3	 54.06	0	3605..4564	-	319	159896536	-	Haur_0003	-	peptidase M28
4	 54.42	0	4561..5760	-	399	159896537	-	Haur_0004	-	amidohydrolase
5	 52.80	0	5996..7444	+	482	159896538	-	Haur_0005	-	TPR repeat-containing protein
6	 49.28	0	7580..8269	+	229	159896539	-	Haur_0006	-	colicin V production protein
7	 52.50	0	8321..9760	-	479	159896540	-	Haur_0007	-	hypothetical protein
8	 51.27	0	9907..10536	-	209	159896541	-	Haur_0008	-	appr-1-p processing domain-containing protein
9	 54.12	0	10540..11025	-	161	159896542	-	Haur_0009	-	thioesterase superfamily protein
10	 48.20	0	11112..11777	-	221	159896543	-	Haur_0010	-	pyrimidine 5'-nucleotidase
11	 54.67	+1	11991..12365	-	124	159896544	-	Haur_0011	-	hypothetical protein
12	 50.08	0	12704..14566	-	620	159896545	-	Haur_0012	-	WD40 domain-containing protein
13	 54.65	+1	14745..16076	+	443	159896546	-	Haur_0013	-	diaminopimelate decarboxylase
14	 52.63	0	16213..18150	+	645	159896547	-	Haur_0014	-	DNA primase
15	 51.29	0	18166..19368	+	400	159896548	-	Haur_0015	-	RpoD family RNA polymerase sigma factor
16	 46.91	0	19806..20792	+	328	159896549	-	Haur_0016	-	integral membrane protein TerC
17	 48.89	0	20847..21971	-	374	159896550	-	Haur_0017	-	hypothetical protein
18	 48.73	0	22004..22594	-	196	159896551	-	Haur_0018	-	TetR family transcriptional regulator
19	 51.89	0	22982..24307	+	441	159896552	-	Haur_0019	-	Alpha-L-fucosidase
20	 45.89	-1	24490..24696	-	68	159896553	-	Haur_0020	-	exodeoxyribonuclease VII, small subunit
21	 52.86	0	24708..25772	-	354	159896554	-	Haur_0021	-	3-oxoacyl-(ACP) synthase III
22	 51.46	0	26163..28562	+	799	159896555	-	Haur_0022	-	hypothetical protein
23	 53.68	0	28950..31190	+	746	159896556	-	Haur_0023	-	serine/threonine protein kinase
24	 53.67	0	31252..32151	+	299	159896557	-	Haur_0024	-	amidohydrolase
25	 51.46	0	32386..33102	+	238	159896558	-	Haur_0025	-	thioredoxin
26	 42.98	-1	33262..33489	+	75	159896559	-	Haur_0026	-	MbtH domain-containing protein
27	 52.40	0	33570..34424	+	284	159896560	-	Haur_0027	-	hypothetical protein
28	 51.80	0	34479..36947	-	822	159896561	-	Haur_0028	-	ATPase
29	 51.84	0	37027..38031	-	334	159896562	-	Haur_0029	-	heat shock protein DnaJ domain-containing protein
30	 46.10	-1	38337..38798	+	153	159896563	-	Haur_0030	-	hypothetical protein
31	 51.64	0	38809..39813	+	334	159896564	-	Haur_0031	-	hypothetical protein
32	 51.44	0	40219..41676	-	485	159896565	-	Haur_0032	-	catalase
33	 48.07	0	41857..42765	+	302	159896566	-	Haur_0033	-	LysR family transcriptional regulator
34	 50.00	0	42959..43624	+	221	159896567	-	Haur_0034	-	hypothetical protein
35	 54.68	+1	43726..44142	+	138	159896568	-	Haur_0035	-	signal-transduction protein
36	 46.98	0	44387..44965	+	192	159896569	-	Haur_0036	-	hypothetical protein
37	 51.58	0	45672..47507	+	611	159896570	-	Haur_0037	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
38	 50.24	0	47511..48557	+	348	159896571	-	Haur_0038	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
39	 52.51	0	49098..49556	+	152	159896572	-	Haur_0039	-	SNARE associated Golgi protein
40	 50.49	0	49590..51005	+	471	159896573	-	Haur_0040	-	hypothetical protein
41	 49.66	0	51027..51620	+	197	159896574	-	Haur_0041	-	phosphoglycerate mutase
42	 52.41	0	51606..52706	-	366	159896575	-	Haur_0042	-	glycosyl transferase group 1
43	 54.06	0	52703..53551	-	282	159896576	-	Haur_0043	-	cell wall biosynthesis glycosyltransferase-like protein
44	 50.87	0	53702..57784	+	1360	159896577	-	Haur_0044	-	TPR repeat-containing adenylate/guanylate cyclase
45	 46.69	0	57811..60849	+	1012	159896578	-	Haur_0045	-	hypothetical protein
46	 50.05	0	61205..62137	+	310	159896579	-	Haur_0046	-	ATPase
47	 50.61	0	62267..63649	+	460	159896580	-	Haur_0047	-	VWA containing CoxE family protein
48	 50.40	0	63851..64852	+	333	159896581	-	Haur_0048	-	beta-lactamase domain-containing protein
49	 51.78	0	64882..65640	+	252	159896582	-	Haur_0049	-	Crp/FNR family transcriptional regulator
50	 49.39	0	65732..66385	+	217	159896583	-	Haur_0050	-	hypothetical protein
51	 51.67	0	66439..66858	+	139	159896584	-	Haur_0051	-	hypothetical protein
52	 39.79	-2	67020..68072	+	350	159896585	-	Haur_0052	-	anti-sigma-factor antagonist
53	 51.59	0	68112..69212	+	366	159896586	-	Haur_0053	-	aminotransferase class I and II
54	 50.00	0	69559..70764	+	401	159896587	-	Haur_0054	-	response regulator receiver sensor signal transduction histidine kinase
55	 54.04	0	70791..71075	-	94	159896588	-	Haur_0055	-	hypothetical protein
56	 53.35	0	71377..72540	+	387	159896589	-	Haur_0056	-	PGAP1 family protein
57	 54.68	+1	72641..73558	+	305	159896590	-	Haur_0057	-	ADP-ribosylation/crystallin J1
58	 50.45	0	73658..74212	-	184	159896591	-	Haur_0058	-	hypothetical protein
59	 51.71	0	74258..74899	-	213	159896592	-	Haur_0059	-	cyclase family protein
60	 54.25	0	75032..78229	-	1065	159896593	-	Haur_0060	-	carbamoyl-phosphate synthase, large subunit
61	 52.19	0	78743..79495	+	250	159896594	-	Haur_0061	-	hypothetical protein
62	 53.54	0	79505..80182	+	225	159896595	-	Haur_0062	-	hypothetical protein
63	 49.69	0	80277..82202	+	641	159896596	-	Haur_0063	-	excinuclease ABC, C subunit
64	 52.29	0	82736..84370	+	544	159896597	-	Haur_0064	-	hypothetical protein
65	 53.81	0	84367..85875	+	502	159896598	-	Haur_0065	-	O-antigen polymerase
66	 49.35	0	86034..86420	+	128	159896599	-	Haur_0066	-	hypothetical protein
67	 49.10	0	86433..87212	+	259	159896600	-	Haur_0067	-	hypothetical protein
68	 43.87	-1	87438..87788	+	116	159896601	-	Haur_0068	-	hypothetical protein
69	 51.71	0	88237..91098	+	953	159896602	-	Haur_0069	-	DNA polymerase I
70	 50.97	0	91117..93225	+	702	159896603	-	Haur_0070	-	multi-sensor signal transduction histidine kinase
71	 48.85	0	93328..94242	+	304	159896604	-	Haur_0071	-	hypothetical protein
72	 50.88	0	94265..95170	+	301	159896605	-	Haur_0072	-	hypothetical protein
73	 47.99	0	95172..96338	+	388	159896606	-	Haur_0073	-	hypothetical protein
74	 52.11	0	96404..97351	+	315	159896607	-	Haur_0074	-	ATPase
75	 51.18	0	97351..98661	+	436	159896608	-	Haur_0075	-	hypothetical protein
76	 53.36	0	98901..99794	-	297	159896609	-	Haur_0076	-	metallophosphoesterase
77	 53.52	0	100187..101365	-	392	159896610	-	Haur_0077	-	hypothetical protein
78	 50.96	0	101365..102357	-	330	159896611	-	Haur_0078	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
79	 51.71	0	102430..104334	-	634	159896612	-	Haur_0079	-	hypothetical protein
80	 51.75	0	104516..105655	+	379	159896613	-	Haur_0080	-	polysaccharide deacetylase
81	 51.34	0	105986..106990	+	334	159896614	-	Haur_0081	-	HEAT repeat-containing PBS lyase
82	 52.32	0	107428..108180	+	250	159896615	-	Haur_0082	-	LmbE family protein
83	 55.87	+1	108177..109241	+	354	159896616	-	Haur_0083	-	methicillin resistance protein
84	 53.14	0	109251..110795	+	514	159896617	-	Haur_0084	-	UDP-N-acetylmuramyl-tripeptide synthetase
85	 46.14	-1	110780..111388	-	202	159896618	-	Haur_0085	-	hypothetical protein
86	 49.06	0	111634..112326	-	230	159896619	-	Haur_0086	-	hypothetical protein
87	 53.28	0	112339..113070	-	243	159896620	-	Haur_0087	-	hypothetical protein
88	 54.13	0	113386..114111	+	241	159896621	-	Haur_0088	-	primosome, DnaD subunit
89	 45.44	-1	113984..114784	+	266	159896622	-	Haur_0089	-	IstB ATP binding domain-containing protein
90	 51.67	0	114888..118160	+	1090	159896623	-	Haur_0090	-	TPR repeat-containing protein
91	 50.66	0	118259..119095	+	278	159896624	-	Haur_0091	-	AraC family transcriptional regulator
92	 51.82	0	119178..119864	+	228	159896625	-	Haur_0092	-	AzlC family protein
93	 45.83	-1	119861..120172	+	103	159896626	-	Haur_0093	-	branched-chain amino acid transport
94	 53.16	0	120426..121454	-	342	159896627	-	Haur_0094	-	cell wall hydrolase/autolysin
95	 51.67	0	121695..122441	+	248	159896628	-	Haur_0095	-	response regulator receiver protein
96	 52.02	0	122510..125185	+	891	159896629	-	Haur_0096	-	alpha-1,6-glucosidase, pullulanase-type
97	 52.13	0	125245..126696	-	483	159896630	-	Haur_0097	-	glutamyl-tRNA(Gln) amidotransferase, B subunit
98	 48.05	0	126764..127735	-	323	159896631	-	Haur_0098	-	hypothetical protein
99	 52.36	0	127983..129485	-	500	159896632	-	Haur_0099	-	hypothetical protein
100	 54.80	+1	129796..131118	-	440	159896633	-	Haur_0100	-	type III restriction protein res subunit
50.64	MEAN

4.00	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.