IslandPath Analysis: Yersinia pseudotuberculosis IP 32953



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.01   STD DEV: 4.97
Yersinia pseudotuberculosis IP 32953, complete genome - 1..4744671
3901 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.86	-1	270..710	-	146	51594360	-	YPTB0001	-	flavodoxin
2	 41.56	-1	803..1264	-	153	51594361	asnC	YPTB0002	-	DNA-binding transcriptional regulator AsnC
3	 45.52	0	1434..2426	+	330	51594362	asnA	YPTB0003	-	asparagine synthetase AsnA
4	 47.72	0	2525..3991	-	488	51594363	yieM	YPTB0004	-	hypothetical protein
5	 46.85	0	3995..5533	-	512	51594364	-	YPTB0005	-	regulatory ATPase RavA
6	 46.01	0	5807..7675	+	622	51594365	trkD	YPTB0006	-	potassium transport protein Kup
7	 48.10	0	7880..8299	+	139	51594366	-	YPTB0007	-	D-ribose pyranase
8	 50.05	0	8350..9276	+	308	51594367	-	YPTB0008	-	ribokinase
9	 49.71	0	9329..9499	+	56	51594368	-	YPTB0009	-	hypothetical protein
10	 46.53	0	9496..10920	-	474	51594369	-	YPTB0010	-	MFS multidrug:H+ antiporter
11	 44.06	0	11000..11689	-	229	51594370	-	YPTB0011	-	GntR-famly transcriptional regulator
12	 49.49	0	17956..19143	+	395	51594371	-	YPTB0012	-	putative transposase
13	 40.68	-1	19223..19753	-	176	51594372	mobB	YPTB0013	-	molybdopterin-guanine dinucleotide biosynthesis protein B
14	 41.11	-1	20495..20764	+	89	51594373	-	YPTB0015	-	hypothetical protein
15	 46.50	0	20855..21841	+	328	51594374	-	YPTB0016	-	serine/threonine protein kinase
16	 42.15	-1	21869..22492	+	207	51594375	dsbA	YPTB0017	-	periplasmic protein disulfide isomerase I
17	 47.45	0	22983..25781	+	932	51594376	polA	YPTB0018	-	DNA polymerase I
18	 46.85	0	26189..26839	-	216	51594377	-	YPTB0019	-	GTPase EngB
19	 48.50	0	27604..28170	+	188	51594378	-	YPTB0020	-	hypothetical protein
20	 47.74	0	28357..29730	+	457	51594379	hemN	YPTB0021	-	coproporphyrinogen III oxidase
21	 52.72	0	29784..31196	-	470	51594380	glnG	YPTB0022	-	nitrogen regulation protein NR(I)
22	 49.24	0	31204..32253	-	349	51594381	glnL	YPTB0023	-	nitrogen regulation protein NR(II)
23	 50.71	0	32506..33915	-	469	51594382	glnA	YPTB0024	-	glutamine synthetase
24	 49.01	0	34478..36301	+	607	51594383	bipA	YPTB0025	-	putative GTPase
25	 44.16	0	36623..37213	+	196	51594384	-	YPTB0026	-	phosphatase
26	 47.80	0	37310..38194	+	294	51594385	rbn	YPTB0027	-	ribonuclease BN
27	 48.86	0	38201..38638	+	145	51594386	-	YPTB0028	-	D-tyrosyl-tRNA deacylase
28	 50.87	0	38824..39747	+	307	51594387	-	YPTB0029	-	hypothetical protein
29	 48.25	0	39882..41591	-	569	51594388	-	YPTB0030	-	hypothetical protein
30	 50.72	0	41738..43123	-	461	51594389	-	YPTB0031	-	NCS2 family xanthine/uracil:H+ symporter
31	 50.21	0	43361..44575	+	404	51594390	gltS	YPTB0032	-	sodium/glutamate symport carrier protein
32	 51.63	0	44941..47022	-	693	51594391	recG	YPTB0033	-	ATP-dependent DNA helicase RecG
33	 49.64	0	47023..47715	-	230	51594392	trmH	YPTB0034	-	tRNA guanosine-2'-O-methyltransferase
34	 48.98	0	47721..49829	-	702	51594393	spoT	YPTB0035	-	bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
35	 51.45	0	49849..50124	-	91	51594394	rpoZ	YPTB0036	-	DNA-directed RNA polymerase subunit omega
36	 46.47	0	50179..50802	-	207	51594395	gmk	YPTB0037	-	guanylate kinase
37	 48.24	0	51203..52906	+	567	51594396	ligB	YPTB0038	-	NAD-dependent DNA ligase LigB
38	 47.57	0	52926..53543	-	205	51594397	-	YPTB0039	-	hypothetical protein
39	 48.26	0	54064..54927	-	287	51594398	-	YPTB0040	-	hypothetical protein
40	 51.32	0	55054..55770	+	238	51594399	rph	YPTB0041	-	ribonuclease PH
41	 50.46	0	55937..56584	+	215	51594400	pyrE	YPTB0042	-	orotate phosphoribosyltransferase
42	 47.91	0	56719..57315	-	198	51594401	slmA	YPTB0043	-	nucleoid occlusion protein
43	 48.90	0	57437..57892	-	151	51594402	dut	YPTB0044	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
44	 48.15	0	57873..59087	-	404	161760595	dfp	YPTB0045	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
45	 45.44	0	59284..59952	+	222	51594404	radC	YPTB0046	-	DNA repair protein RadC
46	 50.63	0	60215..60451	+	78	51594405	rpmB	YPTB0047	-	50S ribosomal protein L28
47	 39.29	-1	60463..60630	+	55	51594406	rpmG	YPTB0048	-	50S ribosomal protein L33
48	 48.89	0	60713..61522	+	269	51594407	mutM	YPTB0049	-	formamidopyrimidine-DNA glycosylase
49	 46.25	0	61528..62007	-	159	51594408	coaD	YPTB0050	-	phosphopantetheine adenylyltransferase
50	 46.74	0	62004..62786	-	260	51594409	kdtX	YPTB0051	-	lipopolysaccharide core biosynthesis glycosyl transferase
51	 50.39	0	62787..64064	-	425	51594410	kdtA	YPTB0052	-	3-deoxy-D-manno-octulosonic-acid transferase
52	 50.62	0	64484..65449	-	321	51594411	rfaC	YPTB0053	-	ADP-heptose:LPS heptosyl transferase I
53	 51.83	0	65449..66513	-	354	51594412	rfaF	YPTB0054	-	ADP-heptose:LPS heptosyltransferase II
54	 45.12	0	66544..67476	-	310	51594413	rfaD	YPTB0055	-	ADP-L-glycero-D-mannoheptose-6-epimerase
55	 50.08	0	67722..68933	+	403	51594414	kbl	YPTB0056	-	2-amino-3-ketobutyrate coenzyme A ligase
56	 47.86	0	68943..69968	+	341	51594415	tdh	YPTB0057	-	L-threonine 3-dehydrogenase
57	 49.26	0	70106..71116	-	336	51594416	yibQ	YPTB0058	-	hypothetical protein
58	 49.96	0	71140..72510	-	456	161760594	-	YPTB0059	-	hypothetical protein
59	 50.26	0	72520..74067	-	515	51594418	-	YPTB0060	-	phosphoglyceromutase
60	 45.52	0	74465..74899	+	144	51594419	-	YPTB0061	-	hypothetical protein
61	 51.41	0	75018..75266	+	82	51594420	grxC	YPTB0062	-	glutaredoxin 3
62	 48.43	0	75354..75830	+	158	51594421	secB	YPTB0063	-	preprotein translocase subunit SecB
63	 51.57	0	75830..76849	+	339	51594422	gpsA	YPTB0064	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
64	 46.10	0	76909..77049	+	46	51594423	-	YPTB0065	-	hypothetical protein
65	 49.76	0	77115..77936	+	273	51594424	cysE	YPTB0066	-	serine acetyltransferase
66	 49.08	0	78059..78547	-	162	51594425	-	YPTB0067	-	putative methyltransferase
67	 52.21	0	78736..79800	+	354	51594426	-	YPTB0068	-	bifunctional regulatory protein/DNA repair protein
68	 49.82	0	79868..81244	-	458	51594427	cpxA	YPTB0069	-	two-component sensor protein
69	 49.93	0	81241..81939	-	232	51594428	cpxR	YPTB0070	-	DNA-binding transcriptional regulator CpxR
70	 46.42	0	82113..82601	+	162	51594429	cpxP	YPTB0071	-	periplasmic stress adaptor protein CpxP
71	 51.04	0	83279..84238	+	319	51594430	-	YPTB0072	-	hypothetical protein
72	 48.62	0	84800..85702	+	300	51594431	fieF	YPTB0073	-	ferrous iron efflux protein F
73	 47.66	0	85920..86903	+	327	51594432	pfkA	YPTB0074	-	6-phosphofructokinase
74	 45.66	0	87124..88113	+	329	51594433	sbp1	YPTB0075	-	sulfate transporter subunit
75	 48.91	0	88363..89139	-	258	51594434	-	YPTB0076	-	molybdate ABC transporter periplasmic-binding protein
76	 44.61	0	89257..90684	-	475	51594435	-	YPTB0077	-	DASS family 2-oxoglutarate/malate:Na+ antiporter
77	 54.06	+1	90750..91463	-	237	51594436	-	YPTB0078	-	hypothetical protein
78	 51.63	0	91460..92197	-	245	51594437	-	YPTB0079	-	hypothetical protein
79	 50.73	0	92334..93569	+	411	51594438	-	YPTB0080	-	transcriptional regulator
80	 48.83	0	93800..94567	-	255	51594439	tpiA	YPTB0081	-	triosephosphate isomerase
81	 44.81	0	94696..95331	-	211	51594440	-	YPTB0082	-	hypothetical protein
82	 51.95	0	95479..95913	+	144	51594441	-	YPTB0083	-	hypothetical protein
83	 52.07	0	96254..97000	-	248	51594442	fpr	YPTB0084	-	ferredoxin-NADP reductase
84	 52.42	0	97155..98165	-	336	51594443	glpX	YPTB0085	-	fructose 1,6-bisphosphatase II
85	 51.97	0	98418..99941	-	507	51594444	glpK	YPTB0086	-	glycerol kinase
86	 50.88	0	100118..100966	-	282	51594445	glpF	YPTB0087	-	MIP family glycerol uptake facilitator protein GlpF
87	 39.17	-1	100976..101215	-	79	51594446	-	YPTB0088	-	hypothetical protein
88	 42.92	-1	101610..101849	+	79	51594447	-	YPTB0089	-	hypothetical protein
89	 43.83	0	102190..104304	-	704	51594448	-	YPTB0090	-	ABC transporter permease/ATP-binding protein
90	 39.21	-1	104297..105589	-	430	51594449	-	YPTB0091	-	HlyD family (ABC transporter associated) multidrug efflux pump
91	 45.83	0	105802..106041	+	79	51594450	-	YPTB0092	-	hypothetical protein
92	 29.33	-2	106216..106365	+	49	51594451	-	YPTB0093	-	hypothetical protein
93	 53.16	+1	106671..107255	+	194	51594452	-	YPTB0094	-	hypothetical protein
94	 47.53	0	107372..107857	-	161	51594453	menG	YPTB0095	-	ribonuclease activity regulator protein RraA
95	 48.91	0	107999..108916	-	305	51594454	menA	YPTB0096	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
96	 49.17	0	109151..110482	-	443	51594455	hslU	YPTB0097	-	ATP-dependent protease ATP-binding subunit
97	 48.76	0	110553..111077	-	174	51594456	hslV	YPTB0098	-	ATP-dependent protease peptidase subunit
98	 53.07	+1	111177..112022	-	281	51594457	ftsN	YPTB0099	-	cell division protein FtsN
99	 48.10	0	112088..113116	-	342	161760593	cytR	YPTB0100	-	DNA-binding transcriptional regulator CytR
100	 52.93	0	113469..115667	-	732	51594459	priA	YPTB0101	-	primosome assembly protein PriA
48.01	MEAN

4.97	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.