IslandPath Analysis: Lactococcus lactis subsp. cremoris SK11



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 36.12   STD DEV: 3.69
Lactococcus lactis subsp. cremoris SK11, complete genome - 1..2438589
2384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 36.70	0	144..1508	+	454	116510844	dnaA	LACR_0001	-	chromosomal replication initiation protein
2	 32.11	-1	1665..2807	+	380	116510845	-	LACR_0002	-	DNA polymerase III subunit beta
3	 32.39	-1	2913..6212	+	1099	116510846	-	LACR_0003	-	DNA helicase/exodeoxyribonuclease V, subunit B
4	 32.89	0	6205..9816	+	1203	116510847	-	LACR_0004	-	DNA helicase/exodeoxyribonuclease V, subunit A
5	 34.83	0	9851..10051	+	66	116510848	-	LACR_0005	-	hypothetical protein
6	 35.66	0	10059..10616	-	185	116510849	-	LACR_0006	-	XRE family transcriptional regulator
7	 38.62	0	10900..12015	+	371	116510850	-	LACR_0007	-	translation-associated GTPase
8	 32.72	0	12127..12450	+	107	116510851	-	LACR_0008	-	XRE family transcriptional regulator
9	 35.79	0	12882..13856	+	324	116510852	-	LACR_0009	-	hypothetical protein
10	 36.68	0	14033..14599	+	188	116510853	-	LACR_0010	-	peptidyl-tRNA hydrolase
11	 35.43	0	14600..18088	+	1162	116510854	-	LACR_0011	-	transcription-repair coupling factor
12	 34.07	0	18405..18674	+	89	116510855	-	LACR_0012	-	ribosome-associated heat shock protein implicated in the recycling of the 50S subunit S4-like protein
13	 30.13	-1	18705..19079	+	124	116510856	-	LACR_0013	-	hypothetical protein
14	 30.86	-1	19079..19402	+	107	116510857	-	LACR_0014	-	hypothetical protein
15	 33.78	0	19543..20880	+	445	116510858	-	LACR_0015	-	Beta-lactamase class A
16	 34.28	0	20877..22145	+	422	116510859	-	LACR_0016	-	tRNA(Ile)-lysidine synthetase, MesJ
17	 33.70	0	22126..22677	+	183	116510860	-	LACR_0017	-	hypoxanthine phosphoribosyltransferase
18	 39.80	0	22883..24970	+	695	116510861	-	LACR_0018	-	FtsH-2 peptidase
19	 38.71	0	26036..27859	+	607	116510862	-	LACR_0027	-	phosphotransferase system, mannitol-specific IIBC component
20	 32.25	-1	27919..29853	+	644	116510863	-	LACR_0028	-	transcriptional antiterminator
21	 33.10	0	29900..30331	+	143	116510864	-	LACR_0029	-	mannitol/fructose-specific phosphotransferase system IIA protein
22	 35.48	0	30480..31646	+	388	116510865	-	LACR_0030	-	mannitol-1-phosphate 5-dehydrogenase
23	 40.53	+1	31752..32015	+	87	116510866	-	LACR_0031	-	hypothetical protein
24	 27.04	-2	32064..32333	-	89	116510867	-	LACR_0032	-	hypothetical protein
25	 31.89	-1	32305..33135	-	276	116510868	-	LACR_0033	-	alpha/beta hydrolase superfamily protein
26	 31.75	-1	33891..34142	+	83	116510869	-	LACR_0034	-	hypothetical protein
27	 29.04	-1	34547..34849	+	100	116510870	-	LACR_0035	-	hypothetical protein
28	 27.40	-2	35076..35429	+	117	116510871	-	LACR_0036	-	hypothetical protein
29	 28.93	-1	35551..35709	+	52	116510872	-	LACR_0037	-	hypothetical protein
30	 36.73	0	35769..36623	-	284	116510873	-	LACR_0038	-	transposase
31	 37.16	0	36620..36880	-	86	116510874	-	LACR_0039	-	transposase
32	 31.13	-1	37363..37815	+	150	116510875	-	LACR_0040	-	acetyltransferase
33	 34.98	0	37900..38142	+	80	116510876	-	LACR_0041	-	hypothetical protein
34	 34.15	0	38236..38847	-	203	116510877	-	LACR_0042	-	MFS superfamily sulfate permease
35	 40.06	+1	38844..39854	-	336	116510878	-	LACR_0043	-	MFS superfamily sulfate permease
36	 33.52	0	40064..40585	+	173	116510879	-	LACR_0044	-	acetyltransferase
37	 37.84	0	41047..42222	+	391	116510880	-	LACR_0046	-	aromatic amino acid aminotransferase
38	 32.01	-1	42320..43075	+	251	116510881	recO	LACR_0047	-	DNA repair protein RecO
39	 40.10	+1	43227..44645	-	472	116510882	-	LACR_0048	-	dihydrolipoamide dehydrogenase
40	 40.96	+1	44864..46450	-	528	116510883	-	LACR_0049	-	acetoin/pyruvate dehydrogenase complex, E2 component, dihydrolipoamide succinyltransferase
41	 41.79	+1	46443..47423	-	326	116510884	-	LACR_0050	-	acetoin dehydrogenase complex, E1 component, beta subunit
42	 41.69	+1	47426..48550	-	374	116510885	-	LACR_0051	-	acetoin dehydrogenase complex, E1 component, alpha subunit
43	 41.32	+1	48639..49640	-	333	116510886	-	LACR_0052	-	lipoate-protein ligase
44	 34.04	0	49833..50687	-	284	116510887	-	LACR_0053	-	glycerophosphoryl diester phosphodiesterase
45	 28.28	-2	50687..50785	-	32	116510888	-	LACR_0054	-	hypothetical protein
46	 36.39	0	51467..51793	-	108	116510889	-	LACR_0056	-	hypothetical protein
47	 38.95	0	51850..52740	-	296	116510890	-	LACR_0057	-	transposase
48	 40.06	+1	52893..53918	-	341	116510891	-	LACR_0058	-	tryptophanyl-tRNA synthetase II
49	 39.04	0	54417..54854	+	145	116510892	-	LACR_0059	-	redox protein, regulator of disulfide bond formation
50	 34.86	0	55016..56329	+	437	116510893	-	LACR_0060	-	amino acid transporter
51	 39.06	0	56408..57403	-	331	116510894	-	LACR_0061	-	putative glycerol-3-phosphate acyltransferase PlsX
52	 37.88	0	57506..58318	-	270	116510895	-	LACR_0062	-	HAD superfamily hydrolase
53	 39.13	0	58767..60404	-	545	116510896	-	LACR_0063	-	ABC transporter ATPase
54	 32.94	0	60904..61158	+	84	116510897	-	LACR_0064	-	hypothetical protein
55	 41.45	+1	61277..62101	-	274	116510898	-	LACR_0065	-	Short-chain dehydrogenase of various substrate specificities
56	 38.83	0	62261..62842	-	193	116510899	-	LACR_0066	-	transcriptional regulator
57	 31.47	-1	63030..63512	-	160	116510900	-	LACR_0067	-	hypothetical protein
58	 39.42	0	63769..65049	-	426	116510901	-	LACR_0068	-	O-acetylhomoserine sulfhydrylase
59	 39.69	0	65315..66148	-	277	116510902	-	LACR_0069	-	Short-chain dehydrogenase of various substrate specificities
60	 38.61	0	66497..67387	-	296	116510903	-	LACR_0070	-	transposase
61	 36.32	0	67560..68027	+	155	116510904	-	LACR_0071	-	universal stress protein UspA-like nucleotide-binding protein
62	 34.85	0	68154..68351	+	65	116510905	-	LACR_0072	-	hypothetical protein
63	 36.88	0	68387..69007	+	206	116510906	-	LACR_0073	-	esterase
64	 40.00	+1	69075..70244	+	389	116510907	-	LACR_0074	-	lactoylglutathione lyase related lyase
65	 37.90	0	70255..70845	+	196	116510908	-	LACR_0075	-	hypothetical protein
66	 32.00	-1	70927..71076	-	49	116510909	rpmG	LACR_0076	-	50S ribosomal protein L33
67	 43.68	+2	71106..71279	-	57	116510910	rpmF	LACR_0077	-	50S ribosomal protein L32
68	 39.90	+1	71641..73422	+	593	116510911	-	LACR_0078	-	cation transport ATPase
69	 39.38	0	73609..74088	+	159	116510912	-	LACR_0079	-	hypothetical protein
70	 36.86	0	74088..74456	+	122	116510913	-	LACR_0080	-	hypothetical protein
71	 35.50	0	74466..75251	-	261	116510914	-	LACR_0081	-	chromosome segregation DNA-binding protein
72	 39.21	0	75306..76565	-	419	116510915	-	LACR_0082	-	recombination factor protein RarA
73	 38.65	0	76609..77097	-	162	116510916	-	LACR_0083	-	acetyltransferase
74	 35.90	0	77270..77737	+	155	116510917	-	LACR_0084	-	hypothetical protein
75	 38.42	0	77767..79320	+	517	116510918	-	LACR_0085	-	ABC transporter ATPase
76	 33.33	0	79395..79679	+	94	116510919	-	LACR_0086	-	hypothetical protein
77	 37.79	0	79713..80453	+	246	116510920	-	LACR_0087	-	SAM-dependent methyltransferase
78	 39.67	0	80440..80928	+	162	116510921	-	LACR_0088	-	hypothetical protein
79	 40.88	+1	80941..81894	+	317	116510922	prmA	LACR_0089	-	ribosomal protein L11 methyltransferase
80	 38.11	0	82014..82766	+	250	116510923	-	LACR_0090	-	hypothetical protein
81	 37.62	0	82796..83752	+	318	116510924	-	LACR_0091	-	xylanase/chitin deacetylase
82	 39.00	0	83953..86175	+	740	116510925	-	LACR_0092	-	guanosine polyphosphate pyrophosphohydrolase/synthetase
83	 34.43	0	87382..87837	+	151	116510926	-	LACR_0094	-	D-tyrosyl-tRNA deacylase
84	 35.32	0	87830..88834	+	334	116510927	-	LACR_0095	-	hypothetical protein
85	 32.37	-1	88837..89460	+	207	116510928	-	LACR_0096	-	HAD superfamily hydrolase
86	 42.63	+1	89594..90991	+	465	116510929	-	LACR_0097	-	amino acid transporter
87	 37.54	0	91161..91802	+	213	116510930	-	LACR_0098	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
88	 32.75	0	91833..92342	-	169	116510931	-	LACR_0099	-	transcriptional regulator
89	 39.38	0	93327..95924	+	865	116510932	secA	LACR_0101	-	preprotein translocase subunit SecA
90	 37.28	0	96054..97091	+	345	116510933	-	LACR_0102	-	phospho-2-dehydro-3-deoxyheptonate aldolase
91	 42.32	+1	97340..97606	+	88	116510934	-	LACR_0103	-	phosphocarrier protein HPr
92	 41.26	+1	97609..99336	+	575	116510935	-	LACR_0104	-	phosphoenolpyruvate-protein phosphotransferase
93	 32.69	0	99511..99819	+	102	116510936	-	LACR_0105	-	hypothetical protein
94	 33.00	0	99909..100208	-	99	116510937	-	LACR_0106	-	hypothetical protein
95	 34.72	0	100313..100600	+	95	116510938	-	LACR_0107	-	serine hydroxymethyltransferase/phosphoribosyl-dephospho-CoA transferase family protein
96	 36.22	0	100880..101815	-	311	116510939	-	LACR_0109	-	alpha/beta fold family hydrolase
97	 36.17	0	101956..102414	+	152	116510940	-	LACR_0110	-	surface antigen
98	 42.02	+1	102583..103365	+	260	116510941	-	LACR_0111	-	hypothetical protein
99	 36.45	0	103551..103871	+	106	116510942	-	LACR_0112	-	membrane transporter
100	 36.17	0	103994..105157	+	387	116510943	-	LACR_0113	-	major facilitator superfamily permease
36.12	MEAN

3.69	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.