IslandPath Analysis: Desulfotomaculum reducens MI-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 42.74   STD DEV: 4.54
Desulfotomaculum reducens MI-1, complete genome - 1..3608104
3276 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 37.78	-1	365..1690	+	441	134297882	dnaA	Dred_0001	-	chromosomal replication initiation protein
2	 38.52	0	1923..3020	+	365	134297883	-	Dred_0002	-	DNA polymerase III, beta subunit
3	 34.27	-1	3033..3245	+	70	134297884	-	Dred_0003	-	RNA-binding S4 domain-containing protein
4	 38.53	0	3256..4371	+	371	134297885	-	Dred_0004	-	DNA replication and repair protein RecF
5	 34.85	-1	4371..4634	+	87	134297886	-	Dred_0005	-	hypothetical protein
6	 40.74	0	4808..6724	+	638	134297887	-	Dred_0006	-	DNA gyrase, B subunit
7	 39.52	0	6995..9451	+	818	134297888	-	Dred_0007	-	DNA gyrase, A subunit
8	 36.16	-1	13433..13786	+	117	134297889	-	Dred_0008	-	hypothetical protein
9	 34.89	-1	16219..17436	+	405	134297890	-	Dred_0009	-	metal dependent phosphohydrolase
10	 42.71	0	17807..18691	+	294	134297891	-	Dred_0010	-	pyridoxine biosynthesis protein
11	 39.15	0	18699..19265	+	188	134297892	-	Dred_0011	-	glutamine amidotransferase subunit PdxT
12	 39.46	0	19566..19859	+	97	134297893	-	Dred_0012	-	hypothetical protein
13	 43.87	0	20292..21449	+	385	134297894	-	Dred_0013	-	aminotransferase, class V
14	 43.45	0	21449..23029	+	526	134297895	-	Dred_0014	-	D-3-phosphoglycerate dehydrogenase
15	 41.49	0	23222..24496	+	424	134297896	-	Dred_0015	-	seryl-tRNA synthetase
16	 31.28	-2	24816..25547	-	243	134297897	-	Dred_0016	-	hypothetical protein
17	 42.11	0	26061..26516	+	151	134297898	-	Dred_0017	-	CMP/dCMP deaminase, zinc-binding
18	 41.30	0	26734..27900	-	388	134297899	-	Dred_0018	-	phage integrase family protein
19	 38.97	0	27993..28400	-	135	134297900	-	Dred_0019	-	hypothetical protein
20	 40.14	0	28384..28809	-	141	134297901	-	Dred_0020	-	XRE family transcriptional regulator
21	 44.09	0	29603..29788	+	61	134297902	-	Dred_0022	-	ISChy6, transposase
22	 40.32	0	30849..31649	+	266	134297903	-	Dred_0024	-	AAA ATPase
23	 42.33	0	32154..34043	+	629	134297904	-	Dred_0025	-	ATPase
24	 43.78	0	34228..35232	+	334	134297905	-	Dred_0026	-	McrBC 5-methylcytosine restriction system component-like protein
25	 34.87	-1	35374..36351	+	325	134297906	-	Dred_0027	-	hypothetical protein
26	 33.08	-2	36336..37112	+	258	134297907	-	Dred_0028	-	hypothetical protein
27	 34.43	-1	38097..38462	+	121	134297908	-	Dred_0029	-	hypothetical protein
28	 31.14	-2	38510..39514	+	334	134297909	-	Dred_0030	-	hypothetical protein
29	 35.42	-1	39595..39834	-	79	134297910	-	Dred_0031	-	hypothetical protein
30	 42.92	0	39909..40127	+	72	134297911	-	Dred_0032	-	heterodisulfide reductase, subunit A, selenocysteine-containing
31	 43.19	0	40682..41290	-	202	134297912	-	Dred_0033	-	transposase IS116/IS110/IS902 family protein
32	 45.03	0	41281..41964	-	227	134297913	-	Dred_0034	-	transposase, IS111A/IS1328/IS1533
33	 38.14	-1	42344..43342	+	332	134297914	-	Dred_0035	-	methyl-accepting chemotaxis sensory transducer
34	 41.79	0	43470..43670	+	66	134297915	-	Dred_0036	-	cold-shock DNA-binding domain-containing protein
35	 42.88	0	43752..45134	+	460	134297916	-	Dred_0037	-	DEAD/DEAH box helicase domain-containing protein
36	 42.90	0	45181..45870	-	229	134297917	-	Dred_0038	-	pyruvate formate-lyase activating enzyme
37	 41.80	0	45889..48120	-	743	134297918	-	Dred_0039	-	formate acetyltransferase
38	 44.14	0	48513..49604	+	363	134297919	-	Dred_0040	-	putative transmembrane anti-sigma factor
39	 42.70	0	50452..52116	+	554	134297920	-	Dred_0041	-	phosphoribulokinase/uridine kinase
40	 46.70	0	52517..54139	+	540	134297921	-	Dred_0042	-	DNA polymerase III, subunits gamma and tau
41	 46.54	0	54179..54496	+	105	134297922	-	Dred_0043	-	hypothetical protein
42	 47.93	+1	54738..55340	+	200	134297923	-	Dred_0044	-	recombination protein RecR
43	 44.25	0	55506..55844	+	112	134297924	-	Dred_0045	-	hypothetical protein
44	 46.75	0	56188..56880	+	230	134297925	-	Dred_0046	-	hypothetical protein
45	 48.07	+1	56958..58043	+	361	134297926	-	Dred_0047	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
46	 49.22	+1	58074..58847	+	257	134297927	-	Dred_0048	-	thiamine pyrophosphate binding domain-containing protein
47	 46.81	0	58840..59403	+	187	134297928	-	Dred_0049	-	pyruvate ferredoxin/flavodoxin oxidoreductase
48	 47.97	+1	59415..59660	+	81	134297929	-	Dred_0050	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
49	 43.43	0	59762..60841	-	359	134297930	-	Dred_0051	-	spore germination protein
50	 47.15	0	60955..61200	-	81	134297931	-	Dred_0052	-	hypothetical protein
51	 44.91	0	61213..62421	-	402	134297932	-	Dred_0053	-	spore germination B3 GerAC family protein
52	 47.95	+1	62436..64070	-	544	134297933	-	Dred_0054	-	GerA spore germination protein
53	 41.44	0	64073..65182	-	369	134297934	-	Dred_0055	-	spore germination protein
54	 40.54	0	65437..65658	+	73	134297935	-	Dred_0056	-	hypothetical protein
55	 40.00	0	65613..65882	-	89	134297936	-	Dred_0057	-	hypothetical protein
56	 46.65	0	66116..67564	+	482	134297937	-	Dred_0058	-	Orn/Lys/Arg decarboxylase, major region
57	 46.79	0	67601..68224	+	207	134297938	-	Dred_0059	-	dTMP kinase
58	 44.25	0	68217..69224	+	335	134297939	-	Dred_0060	-	DNA polymerase III, delta prime subunit
59	 46.17	0	69214..70062	+	282	134297940	-	Dred_0061	-	PSP1 domain-containing protein
60	 43.49	0	70037..70351	+	104	134297941	-	Dred_0062	-	hypothetical protein
61	 47.39	+1	70341..71201	+	286	134297942	-	Dred_0063	-	uroporphyrin-III C/tetrapyrrole methyltransferase
62	 42.91	0	71256..71516	-	86	134297943	-	Dred_0064	-	AbrB family transcriptional regulator
63	 44.89	0	71984..73540	+	518	134297944	-	Dred_0065	-	methionyl-tRNA synthetase
64	 47.16	0	73666..74439	+	257	134297945	-	Dred_0066	-	TatD family hydrolase
65	 46.89	0	74472..75002	+	176	134297946	-	Dred_0067	-	cob(I)alamin adenosyltransferase
66	 45.56	0	75252..76298	-	348	134297947	-	Dred_0068	-	hypothetical protein
67	 43.48	0	76530..77357	+	275	134297948	-	Dred_0069	-	3D domain-containing protein
68	 46.24	0	77541..78470	+	309	134297949	-	Dred_0070	-	3D domain-containing protein
69	 43.78	0	78802..79605	+	267	134297950	-	Dred_0071	-	phosphomethylpyrimidine kinase
70	 39.24	0	79629..79865	+	78	134297951	-	Dred_0072	-	thiamine biosynthesis protein ThiS
71	 50.52	+1	79870..80643	+	257	134297952	-	Dred_0073	-	thiazole biosynthesis family protein
72	 44.81	0	80653..81759	+	368	134297953	-	Dred_0074	-	thiazole biosynthesis protein ThiH
73	 45.48	0	81767..82375	+	202	134297954	-	Dred_0075	-	thiamine biosynthesis protein ThiF
74	 45.22	0	82393..83040	+	215	134297955	-	Dred_0076	-	thiamine-phosphate pyrophosphorylase
75	 47.39	+1	83197..84078	+	293	134297956	-	Dred_0077	-	dimethyladenosine transferase
76	 41.61	0	84109..84579	+	156	134297957	-	Dred_0078	-	hypothetical protein
77	 42.54	0	84823..85734	+	303	134297958	-	Dred_0079	-	peptidase U57, YabG
78	 42.33	0	85802..86812	+	336	134297959	-	Dred_0080	-	hypothetical protein
79	 45.03	0	87136..88101	+	321	134297960	-	Dred_0081	-	Allergen V5/Tpx-1 family protein
80	 42.55	0	88299..90002	+	567	134297961	-	Dred_0082	-	peptidoglycan-binding LysM
81	 45.87	0	90038..91162	+	374	134297962	-	Dred_0083	-	hypothetical protein
82	 49.04	+1	91299..92030	+	243	134297963	-	Dred_0084	-	hypothetical protein
83	 40.59	0	92046..92348	+	100	134297964	-	Dred_0085	-	hypothetical protein
84	 41.33	0	92362..92661	+	99	134297965	-	Dred_0086	-	hypothetical protein
85	 42.48	0	92834..94069	-	411	134297966	-	Dred_0087	-	transposase IS116/IS110/IS902 family protein
86	 45.19	0	95453..95992	+	179	134297967	-	Dred_0088	-	hypothetical protein
87	 47.34	+1	96023..97129	+	368	134297968	-	Dred_0089	-	peptidase S8 and S53, subtilisin, kexin, sedolisin
88	 41.15	0	97257..97499	+	80	134297969	-	Dred_0090	-	hypothetical protein
89	 46.53	0	97675..98121	+	148	134297970	-	Dred_0091	-	hypothetical protein
90	 47.73	+1	98298..99665	-	455	134297971	-	Dred_0092	-	amino acid carrier protein
91	 43.18	0	99932..100510	-	192	134297972	-	Dred_0093	-	ErfK/YbiS/YcfS/YnhG family protein
92	 49.23	+1	100737..101585	+	282	134297973	-	Dred_0094	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
93	 45.45	0	101669..102361	+	230	134297974	-	Dred_0095	-	GntR family transcriptional regulator
94	 42.15	0	102354..103136	+	260	134297975	-	Dred_0096	-	hypothetical protein
95	 45.89	0	103178..104395	+	405	134297976	-	Dred_0097	-	threonine dehydratase
96	 43.14	0	104513..104767	+	84	134297977	-	Dred_0098	-	SpoVG family protein
97	 45.95	0	104946..106316	+	456	134297978	-	Dred_0099	-	UDP-N-acetylglucosamine pyrophosphorylase
98	 45.95	0	106339..107289	+	316	134297979	-	Dred_0100	-	ribose-phosphate pyrophosphokinase
99	 47.25	0	107912..109111	+	399	134297980	-	Dred_0101	-	hypothetical protein
100	 46.27	0	109131..109532	+	133	134297981	-	Dred_0102	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
42.74	MEAN

4.54	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.