IslandPath Analysis: Methanococcus maripaludis C5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.65   STD DEV: 3.74
Methanococcus maripaludis C5, complete genome - 1..1780761
1813 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 30.20	0	9..743	+	244	134045047	-	MmarC5_0001	-	6-carboxyhexanoate--CoA ligase
2	 31.63	0	752..1864	+	370	134045048	-	MmarC5_0002	-	8-amino-7-oxononanoate synthase
3	 30.66	0	1939..2499	+	186	134045049	-	MmarC5_0003	-	dethiobiotin synthase
4	 27.95	-1	2514..2810	-	98	134045050	-	MmarC5_0004	-	hypothetical protein
5	 28.31	-1	2837..3832	+	331	134045051	-	MmarC5_0005	-	nucleoside recognition domain-containing protein
6	 33.07	0	3841..4596	+	251	134045052	-	MmarC5_0006	-	TatD family hydrolase
7	 37.22	0	4607..4915	+	102	134045053	-	MmarC5_0007	-	hypothetical protein
8	 32.40	0	4890..5426	+	178	134045054	-	MmarC5_0008	-	hypothetical protein
9	 40.83	+1	5510..6469	-	319	134045055	-	MmarC5_0009	-	tetrahydromethanopterin S-methyltransferase subunit H
10	 34.67	0	6494..6718	-	74	134045056	-	MmarC5_0010	-	tetrahydromethanopterin S-methyltransferase subunit G
11	 41.99	+2	6723..7484	-	253	134045057	-	MmarC5_0011	-	tetrahydromethanopterin S-methyltransferase subunit A
12	 40.69	+1	7501..8220	-	239	134045058	-	MmarC5_0012	-	tetrahydromethanopterin S-methyltransferase subunit A
13	 36.39	0	8242..8568	-	108	134045059	-	MmarC5_0013	-	tetrahydromethanopterin S-methyltransferase subunit B
14	 42.08	+2	8579..9367	-	262	134045060	-	MmarC5_0014	-	tetrahydromethanopterin S-methyltransferase subunit C
15	 44.07	+2	9406..10113	-	235	134045061	-	MmarC5_0015	-	tetrahydromethanopterin S-methyltransferase subunit D
16	 43.11	+2	10140..11039	-	299	134045062	-	MmarC5_0016	-	tetrahydromethanopterin S-methyltransferase subunit E
17	 42.48	+2	11309..12970	-	553	134045063	-	MmarC5_0017	-	methyl-coenzyme M reductase, alpha subunit
18	 40.23	+1	13011..13793	-	260	134045064	-	MmarC5_0018	-	methyl-coenzyme M reductase, gamma subunit
19	 40.70	+1	13803..14399	-	198	134045065	-	MmarC5_0019	-	methyl-coenzyme M reductase operon protein C
20	 37.71	+1	14408..14887	-	159	134045066	-	MmarC5_0020	-	methyl-coenzyme M reductase, protein D
21	 41.22	+2	14899..16230	-	443	134045067	-	MmarC5_0021	-	methyl-coenzyme M reductase, beta subunit
22	 33.33	0	16490..17800	+	436	134045068	-	MmarC5_0022	-	hypothetical protein
23	 25.64	-2	17793..18065	-	90	134045069	-	MmarC5_0023	-	hypothetical protein
24	 31.54	0	18896..19453	+	185	134045070	-	MmarC5_0024	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
25	 35.70	0	19480..20832	+	450	134045071	-	MmarC5_0025	-	signal recognition particle protein Srp54
26	 33.18	0	21184..21855	-	223	134045072	-	MmarC5_0026	-	reduced coenzyme F420:NADP oxidoreductase
27	 32.34	0	21877..22683	-	268	134045073	-	MmarC5_0027	-	xylose isomerase domain-containing protein
28	 35.42	0	22761..23336	+	191	134045074	-	MmarC5_0028	-	fumarase beta subunit
29	 35.39	0	23422..23907	-	161	134045075	rps19p	MmarC5_0029	-	30S ribosomal protein S19P
30	 41.77	+2	23946..24668	-	240	134045076	rpl2p	MmarC5_0030	-	50S ribosomal protein L2P
31	 34.10	0	24709..24969	-	86	134045077	rplW	MmarC5_0031	-	50S ribosomal protein L23
32	 36.36	0	24991..25749	-	252	134045078	rpl4lp	MmarC5_0032	-	50S ribosomal protein L4P
33	 38.81	+1	25780..26784	-	334	134045079	rpl3p	MmarC5_0033	-	50S ribosomal protein L3P
34	 26.57	-1	27051..27641	+	196	134045080	-	MmarC5_0034	-	translin family protein
35	 33.70	0	27939..28760	-	273	134045081	-	MmarC5_0035	-	hypothetical protein
36	 32.80	0	28757..29323	-	188	134045082	-	MmarC5_0036	-	hypothetical protein
37	 40.98	+1	29385..29855	-	156	134045083	-	MmarC5_0037	-	transporter component
38	 40.35	+1	29877..30332	-	151	134045084	-	MmarC5_0038	-	cytochrome c heme-binding site
39	 28.27	-1	30553..31164	+	203	134045085	-	MmarC5_0039	-	nucleic acid binding, OB-fold, tRNA/helicase-type
40	 29.07	-1	31165..32361	+	398	134045086	-	MmarC5_0040	-	hypothetical protein
41	 30.32	0	32369..32800	-	143	134045087	-	MmarC5_0041	-	hypothetical protein
42	 33.55	0	32923..33375	-	150	134045088	-	MmarC5_0042	-	hypothetical protein
43	 36.79	0	33748..34992	+	414	134045089	pgk	MmarC5_0043	-	phosphoglycerate kinase
44	 37.80	+1	35120..36103	+	327	134045090	-	MmarC5_0044	-	AIR synthase related protein
45	 32.99	0	36113..36403	+	96	134045091	-	MmarC5_0045	-	hypothetical protein
46	 23.35	-2	36400..37110	+	236	134045092	-	MmarC5_0046	-	methyltransferase type 11
47	 32.84	0	37107..37916	+	269	134045093	-	MmarC5_0047	-	prephenate dehydratase
48	 37.73	+1	38024..39274	+	416	134045094	-	MmarC5_0048	-	aspartate aminotransferase
49	 28.41	-1	39302..39991	-	229	134045095	-	MmarC5_0049	-	ribonuclease III
50	 33.73	0	40041..41303	-	420	134045096	-	MmarC5_0050	-	peptidase U62, modulator of DNA gyrase
51	 37.94	+1	41411..42256	+	281	134045097	-	MmarC5_0051	-	preprotein translocase subunit SecF
52	 36.25	0	42274..43440	+	388	134045098	secD	MmarC5_0052	-	preprotein translocase subunit SecD
53	 32.65	0	43492..44514	+	340	134045099	-	MmarC5_0053	-	hypothetical protein
54	 32.63	0	44524..44952	+	142	134045100	-	MmarC5_0054	-	hypothetical protein
55	 33.33	0	44977..45651	-	224	134045101	-	MmarC5_0055	-	hydrogenase accessory protein HypB
56	 32.98	0	45741..46583	+	280	134045102	-	MmarC5_0056	-	tungstate/molybdate transport system permease protein
57	 31.95	0	46596..47534	+	312	134045103	-	MmarC5_0057	-	tungstate/molybdate transport system ATP-binding protein
58	 36.65	0	47704..48306	+	200	134045104	-	MmarC5_0058	-	peptidase M50
59	 34.38	0	48325..48993	+	222	134045105	-	MmarC5_0059	-	condensin subunit ScpA
60	 40.23	+1	49177..50814	+	545	134045106	-	MmarC5_0060	-	thermosome
61	 31.38	0	50911..52242	-	443	134045107	-	MmarC5_0061	-	prephenate dehydrogenase
62	 39.13	+1	52542..53663	+	373	134045108	-	MmarC5_0062	-	alanine dehydrogenase
63	 35.38	0	53721..54842	+	373	134045109	-	MmarC5_0063	-	alanine racemase
64	 40.75	+1	55112..56419	+	435	134045110	-	MmarC5_0064	-	amino acid carrier protein
65	 37.73	+1	56589..57884	+	431	134045111	gatA	MmarC5_0065	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
66	 27.18	-1	57898..58368	-	156	134045112	-	MmarC5_0066	-	hypothetical protein
67	 30.17	0	58399..59157	-	252	134045113	-	MmarC5_0067	-	extracellular solute-binding protein
68	 38.30	+1	59365..59706	-	113	134045114	-	MmarC5_0068	-	hypothetical protein
69	 33.99	0	59727..60032	-	101	134045115	-	MmarC5_0069	-	hypothetical protein
70	 37.66	+1	60288..60818	+	176	134045116	-	MmarC5_0070	-	pyruvate ferredoxin oxidoreductase subunit gamma
71	 34.50	0	60835..61092	+	85	134045117	-	MmarC5_0071	-	pyruvate ferredoxin oxidoreductase, delta subunit
72	 37.46	+1	61114..62277	+	387	134045118	-	MmarC5_0072	-	pyruvate ferredoxin oxidoreductase, alpha subunit
73	 41.25	+2	62294..63190	+	298	134045119	-	MmarC5_0073	-	pyruvate ferredoxin oxidoreductase subunit beta
74	 37.90	+1	63214..63717	+	167	134045120	-	MmarC5_0074	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
75	 36.21	0	63735..64151	+	138	134045121	-	MmarC5_0075	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
76	 30.49	0	64157..64648	-	163	134045122	-	MmarC5_0076	-	phosphodiesterase
77	 38.98	+1	65213..66310	+	365	134045123	-	MmarC5_0077	-	cell division protein FtsZ
78	 33.14	0	66350..66862	+	170	134045124	-	MmarC5_0078	-	XRE family transcriptional regulator
79	 32.82	0	66872..67654	-	260	134045125	-	MmarC5_0079	-	hypothetical protein
80	 32.50	0	67651..68130	-	159	134045126	-	MmarC5_0080	-	hypothetical protein
81	 32.93	0	68153..69658	-	501	134045127	pheS	MmarC5_0081	-	phenylalanyl-tRNA synthetase subunit alpha
82	 33.13	0	69738..70736	+	332	134045128	-	MmarC5_0082	-	radical SAM family protein
83	 27.86	-1	70749..71351	-	200	134045129	-	MmarC5_0083	-	hypothetical protein
84	 32.74	0	71448..72791	-	447	134045130	-	MmarC5_0084	-	S-layer protein
85	 33.87	0	72898..73455	+	185	134045131	-	MmarC5_0085	-	orotate phosphoribosyltransferase
86	 32.86	0	73500..74768	+	422	134045132	-	MmarC5_0086	-	amidohydrolase
87	 25.52	-2	74772..75539	-	255	134045133	-	MmarC5_0087	-	seryl-tRNA(Sec) kinase
88	 33.63	0	75631..77331	+	566	134045134	-	MmarC5_0088	-	D-fructose 1,6-bisphosphatase
89	 34.64	0	77519..78895	-	458	134045135	-	MmarC5_0089	-	peptidase U62, modulator of DNA gyrase
90	 33.48	0	78940..80337	-	465	134045136	-	MmarC5_0090	-	aldehyde dehydrogenase
91	 37.31	0	80456..81259	+	267	134045137	-	MmarC5_0091	-	MscS mechanosensitive ion channel
92	 33.13	0	81284..81769	-	161	134045138	-	MmarC5_0092	-	molybdenum cofactor synthesis domain-containing protein
93	 35.72	0	81772..82608	-	278	134045139	-	MmarC5_0093	-	cobalt transporter ATP-binding subunit
94	 36.65	0	82886..84001	+	371	134045140	-	MmarC5_0094	-	hypothetical protein
95	 30.23	0	84241..85014	-	257	134045141	-	MmarC5_0095	-	cobalt ABC transporter, inner membrane subunit CbiQ
96	 38.44	+1	85028..85321	-	97	134045142	-	MmarC5_0096	-	cobalt transport protein CbiN
97	 40.71	+1	85321..85998	-	225	134045143	-	MmarC5_0097	-	cobalt transport protein CbiM
98	 38.03	+1	86194..87450	-	418	134045144	-	MmarC5_0098	-	3-isopropylmalate dehydratase, large subunit
99	 32.90	0	87564..88496	-	310	134045145	-	MmarC5_0099	-	hypothetical protein
100	 33.85	0	88511..89854	-	447	134045146	-	MmarC5_0100	-	cobyrinate a,c-diamide synthase / hydrogenobyrinic acid a,c-diamide synthase (glutamine-hydrolysing)
33.65	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.