IslandPath Analysis: Parabacteroides distasonis ATCC 8503



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.44   STD DEV: 5.37
Parabacteroides distasonis ATCC 8503, complete genome - 1..4811379
3850 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 43.35	0	1..1398	+	465	150006675	dnaA	BDI_0001	-	chromosomal replication initiation protein
2	 44.71	0	1656..4196	+	846	150006676	-	BDI_0002	-	putative ribonucleoside reductase
3	 43.34	0	4220..6907	+	895	150006677	-	BDI_0003	-	4-alpha-glucanotransferase
4	 44.89	0	6947..7318	-	123	150006678	-	BDI_0004	-	hypothetical protein
5	 44.44	0	7410..7778	+	122	150006679	-	BDI_0005	-	dihydroneopterin aldolase
6	 47.46	0	7856..9292	+	478	150006680	-	BDI_0006	-	putative hydrogenase
7	 47.68	0	9298..10545	+	415	150006681	-	BDI_0007	-	hypothetical protein
8	 45.74	0	10640..11284	+	214	150006682	-	BDI_0008	-	MarC family integral membrane protein
9	 40.34	0	11320..11790	-	156	150006683	-	BDI_0009	-	hypothetical protein
10	 42.58	0	11661..12071	-	136	150006684	-	BDI_0010	-	beta-hexosaminidase precursor
11	 40.26	0	12295..12756	+	153	150006685	-	BDI_0011	-	putative two-component system sensor histidine kinase
12	 43.90	0	12917..13342	+	141	150006686	-	BDI_0012	-	putative two-component system response regulator
13	 41.34	0	13546..14769	+	407	150006687	-	BDI_0013	-	integrase
14	 28.84	-2	14872..15138	-	88	150006688	-	BDI_0014	-	hypothetical protein
15	 43.52	0	15265..15804	+	179	150006689	-	BDI_0015	-	putative transcriptional regulator UpxY-like protein
16	 43.79	0	15801..16928	+	375	150006690	-	BDI_0016	-	undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase
17	 47.37	0	16953..17771	+	272	150006691	-	BDI_0017	-	BexD/CtrA/VexA family polysaccharide export protein
18	 46.04	0	17805..20189	+	794	150006692	-	BDI_0018	-	capsular polysaccharide transport protein, putative
19	 42.84	0	20195..20920	+	241	150006693	-	BDI_0019	-	capsular polysaccharide biosynthesis protein, putative
20	 51.94	+1	20921..21436	-	171	150006695	-	BDI_0021	-	N-acetylmuramoyl-L-alanine amidase, putative
21	 52.11	+1	20924..21445	+	173	150006694	-	BDI_0020	-	hypothetical protein
22	 50.42	0	21603..22076	-	157	150006696	-	BDI_0022	-	hypothetical protein
23	 41.76	0	22289..22561	-	90	150006697	-	BDI_0023	-	hypothetical protein
24	 45.77	0	22671..23225	+	184	150006698	-	BDI_0024	-	hypothetical protein
25	 43.37	0	23253..24458	+	401	150006699	-	BDI_0025	-	putative UDP-ManNAc dehydrogenase
26	 42.67	0	24475..25449	+	324	150006700	-	BDI_0026	-	nucleoside-diphosphate-sugar epimerase
27	 39.48	-1	25452..26720	+	422	150006701	-	BDI_0027	-	putative UDP-glucose-6 dehydrogenase
28	 31.37	-2	26739..27653	+	304	150006702	-	BDI_0028	-	putative glycosyltransferase
29	 33.51	-2	27685..28803	+	372	150006703	-	BDI_0029	-	hypothetical protein
30	 33.00	-2	28969..29568	+	199	150006704	-	BDI_0030	-	putative acetyltransferase
31	 34.52	-2	29561..30991	+	476	150006705	-	BDI_0031	-	O-antigen repeat-containing transporter
32	 34.44	-2	30993..31712	+	239	150006706	-	BDI_0032	-	acetyltransferase
33	 33.52	-2	31709..32803	+	364	150006707	-	BDI_0033	-	glycosyl transferase family protein
34	 34.28	-2	32800..33960	+	386	150006708	-	BDI_0034	-	putative glycosyltransferase
35	 33.64	-2	33951..35234	+	427	150006709	-	BDI_0035	-	hypothetical protein
36	 30.96	-2	35245..35877	+	210	150006710	-	BDI_0036	-	hypothetical protein
37	 34.88	-1	35883..36851	+	322	150006711	-	BDI_0037	-	hypothetical protein
38	 35.48	-1	36863..37699	+	278	150006712	-	BDI_0038	-	hypothetical protein
39	 33.52	-2	37675..38772	+	365	150006713	-	BDI_0039	-	glycosyl transferase family protein
40	 35.99	-1	38950..39438	+	162	150006714	-	BDI_0040	-	putative serine acetyltransferase, putative hexapeptide transferase family protein
41	 39.28	-1	39448..40641	+	397	150006715	-	BDI_0041	-	hypothetical protein
42	 41.63	0	40656..41354	+	232	150006716	-	BDI_0042	-	glycosyl transferase family protein
43	 42.98	0	41366..42526	+	386	150006717	-	BDI_0043	-	putative UDP-GlcNAc 2-epimerase
44	 33.33	-2	42535..42762	+	75	150006718	-	BDI_0044	-	putative glycosyltransferase
45	 34.29	-2	42759..43070	+	103	150006719	-	BDI_0045	-	hypothetical protein
46	 46.98	0	43591..44616	-	341	150006720	-	BDI_0046	-	glycosyl transferase family protein
47	 45.57	0	44613..45503	-	296	150006721	-	BDI_0047	-	putative acetyltransferase
48	 49.21	0	45505..46839	-	444	150006722	-	BDI_0048	-	putative Fe-S oxidoreductase
49	 40.82	0	47171..48238	-	355	150006723	-	BDI_0049	-	hypothetical protein
50	 46.56	0	48324..50039	-	571	150006724	-	BDI_0050	-	beta-N-acetylhexosaminidase
51	 44.38	0	50122..51786	+	554	150006725	-	BDI_0051	-	putative long-chain-fatty-acid-CoA ligase
52	 40.26	0	51936..52238	-	100	150006726	-	BDI_0052	-	hypothetical protein
53	 46.06	0	52249..54354	+	701	150006727	-	BDI_0053	-	TonB-dependent receptor, putative
54	 43.17	0	54349..55659	-	436	150006728	-	BDI_0054	-	putative NADH dehydrogenase
55	 34.28	-2	56104..56949	-	281	150006729	-	BDI_0055	-	transcriptional regulator
56	 46.84	0	57301..58722	-	473	150006730	-	BDI_0056	-	sialic acid-specific 9-O-acetylesterase
57	 45.33	0	58804..60003	-	399	150006731	-	BDI_0057	-	putative N-acyl-D-glucosamine 2-epimerase
58	 46.84	0	59996..61387	-	463	150006732	-	BDI_0058	-	putative cation symporter
59	 49.45	0	61406..62578	-	390	150006733	-	BDI_0059	-	hypothetical protein
60	 47.79	0	62679..63785	-	368	150006734	-	BDI_0060	-	beta-glycosidase
61	 38.27	-1	63949..64191	+	80	150006735	-	BDI_0061	-	hypothetical protein
62	 45.54	0	64404..65870	-	488	150006736	-	BDI_0062	-	hypothetical protein
63	 46.38	0	65877..67646	-	589	150006737	-	BDI_0063	-	putative transmembrane protein
64	 45.77	0	67654..69108	-	484	150006738	-	BDI_0064	-	putative cytochrome c binding protein
65	 49.17	0	69123..70688	-	521	150006739	-	BDI_0065	-	hypothetical protein
66	 46.27	0	70672..71274	-	200	150006740	-	BDI_0066	-	hypothetical protein
67	 48.23	0	71459..72586	-	375	150006741	-	BDI_0067	-	acetylornithine aminotransferase
68	 48.19	0	72601..73569	-	322	150006742	argC	BDI_0068	-	N-acetyl-gamma-glutamyl-phosphate reductase
69	 50.83	+1	73566..74765	-	399	150006743	-	BDI_0069	-	argininosuccinate synthase
70	 53.20	+1	74804..75397	-	197	150006744	-	BDI_0070	-	hypothetical protein
71	 47.39	0	75426..75866	-	146	150006745	-	BDI_0071	-	arginine repressor, transcriptional regulator of arginine metabolism
72	 50.51	0	76248..77039	+	263	150006746	-	BDI_0072	-	putative Zn-dependent protease with chaperone function
73	 47.10	0	77085..78893	-	602	150006747	-	BDI_0073	-	DNA mismatch repair protein MutS
74	 41.85	0	79048..79881	+	277	150006748	-	BDI_0074	-	outer membrane phospholipase A
75	 51.07	+1	80023..81567	+	514	150006749	-	BDI_0075	-	propionyl-CoA carboxylase beta chain
76	 54.10	+1	81580..83091	+	503	150006750	-	BDI_0076	-	putative biotin carboxylase 1
77	 46.96	0	83091..83633	+	180	150006751	-	BDI_0077	-	biotin carboxyl carrier protein
78	 49.72	0	83802..85229	+	475	150006752	-	BDI_0078	-	Na+/H+ antiporter NhaD and related arsenite permease
79	 51.46	+1	85237..86091	+	284	150006753	-	BDI_0079	-	hypothetical protein
80	 56.56	+2	86095..86925	+	276	150006754	murQ	BDI_0080	-	N-acetylmuramic acid-6-phosphate etherase
81	 53.39	+1	86969..87631	+	220	150006755	-	BDI_0081	-	hypothetical protein
82	 46.88	0	87695..88336	+	213	150006756	-	BDI_0082	-	hypothetical protein
83	 54.17	+1	88333..88908	+	191	150006757	-	BDI_0083	-	hypothetical protein
84	 34.48	-2	89907..90167	+	86	150006758	-	BDI_0084	-	hypothetical protein
85	 48.17	0	90334..91182	-	282	150006759	-	BDI_0085	-	hypothetical protein
86	 53.79	+1	91210..92988	-	592	150006760	-	BDI_0086	-	hypothetical protein
87	 48.95	0	93001..96234	-	1077	150006761	-	BDI_0087	-	hypothetical protein
88	 46.30	0	96599..97477	-	292	150006762	-	BDI_0088	-	putative transcriptional regulator
89	 46.16	0	97496..99694	-	732	150006763	-	BDI_0089	-	alpha-glycosidase
90	 48.26	0	99765..101258	-	497	150006764	-	BDI_0090	-	inositol-5-monophosphate dehydrogenase
91	 44.96	0	101419..102132	+	237	150006765	-	BDI_0091	-	hypothetical protein
92	 44.37	0	102209..103504	-	431	150006766	-	BDI_0092	-	hypothetical protein
93	 42.77	0	103614..104090	+	158	150006767	-	BDI_0093	-	5-nitroimidazole antibiotic resistance protein
94	 43.13	0	104129..104761	-	210	150006768	-	BDI_0094	-	thioredoxin peroxidase
95	 40.07	0	104934..106802	+	622	150006769	-	BDI_0095	-	two-component system sensor histidine kinase
96	 44.17	0	106973..108199	+	408	150006770	-	BDI_0096	-	glycine betaine transport ATP-binding protein
97	 46.40	0	108196..109029	+	277	150006771	-	BDI_0097	-	glycine betaine/L-proline transport system permease
98	 43.62	0	109058..109951	+	297	150006772	-	BDI_0098	-	glycine betaine-binding protein precursor
99	 44.74	0	109938..110717	+	259	150006773	-	BDI_0099	-	hypothetical protein
100	 42.03	0	110800..111282	-	160	150006774	-	BDI_0100	-	ferritin A
45.44	MEAN

5.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.