IslandPath Analysis: Burkholderia mallei ATCC 23344



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.65   STD DEV: 4.60
Burkholderia mallei ATCC 23344 chromosome 1, complete sequence - 1..3510148
2995 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 66.28	0	70..1626	+	518	53724901	dnaA	BMA0001	-	chromosomal replication initiation protein
2	 63.50	0	1789..2892	+	367	53724902	dnaN	BMA0002	-	DNA polymerase III subunit beta
3	 64.16	0	3081..5549	+	822	53724903	gyrB	BMA0003	-	DNA gyrase subunit B
4	 57.20	-2	6075..6338	+	87	53726328	-	BMA0004	-	IS407A, transposase OrfA
5	 61.75	-1	6362..7195	+	277	53724904	-	BMA0005	-	IS407A, transposase OrfB
6	 62.86	-1	7240..7554	-	104	53724905	-	BMA0006	-	carboxymuconolactone decarboxylase family protein
7	 61.71	-1	7606..7827	-	73	53724906	-	BMA0007	-	hypothetical protein
8	 72.62	+1	7824..13244	-	1806	53724907	-	BMA0008	-	FG-GAP/YD repeat-containing protein
9	 71.34	0	13289..13909	+	206	53726058	-	BMA0009	-	hypothetical protein
10	 69.85	0	13885..17151	-	1088	53724908	-	BMA0010	-	hypothetical protein
11	 53.89	-2	17373..17552	+	59	53724909	-	BMA0012	-	hypothetical protein
12	 72.52	+1	20889..21896	+	335	53724910	-	BMA0019	-	FHA domain-containing protein
13	 74.16	+1	22345..25986	+	1213	53724911	-	BMA0020	-	protein kinase domain-containing protein
14	 64.46	0	25983..26345	+	120	53724912	-	BMA0021	-	hypothetical protein
15	 72.52	+1	26942..29092	+	716	53724913	-	BMA0023	-	hypothetical protein
16	 67.44	0	29162..29938	+	258	53724914	-	BMA0024	-	hypothetical protein
17	 42.86	-2	29981..30148	+	55	53724915	-	BMA0025	-	hypothetical protein
18	 72.82	+1	30364..32784	+	806	53724916	-	BMA0026	-	EAL/GGDEF domain-containing protein
19	 67.45	0	32962..34230	-	422	53724917	-	BMA0027	-	polysaccharide biosynthesis family protein
20	 70.93	0	34307..35503	-	398	53724918	-	BMA0028	-	glycosyl transferase, group 1 family protein
21	 71.00	0	35538..37130	-	530	53724919	-	BMA0029	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
22	 67.59	0	37127..37777	-	216	53724920	-	BMA0030	-	ElaA family protein
23	 68.48	0	37866..38141	-	91	53724921	-	BMA0031	-	hypothetical protein
24	 67.15	0	38155..39396	+	413	53724922	-	BMA0032	-	glycosyl transferase, group 1 family protein
25	 71.70	0	39424..40158	+	244	53724923	-	BMA0033	-	PAP2 family protein
26	 52.38	-2	40208..40333	+	41	53724924	-	BMA0034	-	hypothetical protein
27	 68.68	0	40903..42291	+	462	53724925	-	BMA0037	-	sigma-54 dependent transcriptional regulator
28	 72.58	+1	44319..46838	-	839	53724926	-	BMA0039	-	beta-mannosidase-related protein
29	 66.39	0	46835..47923	-	362	53724927	-	BMA0040	-	hypothetical protein
30	 69.28	0	48891..50114	-	407	53724928	-	BMA0042	-	acyl-CoA dehydrogenase domain-containing protein
31	 55.16	-2	50111..50362	-	83	53724929	-	BMA0043	-	acyl carrier protein
32	 65.03	0	50607..51401	-	264	53724930	-	BMA0044	-	hypothetical protein
33	 68.02	0	52325..53134	+	269	53724931	-	BMA0045	-	hypothetical protein
34	 67.10	0	53167..54549	+	460	53724932	-	BMA0046	-	polysaccharide biosynthesis glycosyltransferase, putative
35	 68.84	0	54621..55910	+	429	53724933	-	BMA0047	-	capsular polysaccharide biosynthesis/export periplasmic protein
36	 68.69	0	56250..57335	+	361	53724934	-	BMA0048	-	glycosyl transferase, group 1 family protein
37	 69.22	0	57364..58263	-	299	53724935	-	BMA0049	-	hypothetical protein
38	 65.64	0	58351..58545	+	64	53724936	-	BMA0050	-	hypothetical protein
39	 64.07	0	58745..60208	+	487	53724937	-	BMA0051	-	ISBma2, transposase
40	 65.96	0	60327..61316	-	329	53724938	lipA	BMA0052	-	lipoyl synthase
41	 68.73	0	61309..62082	-	257	53724939	lipB	BMA0053	-	lipoyltransferase
42	 64.20	0	62356..62517	+	53	53724940	-	BMA0054	-	hypothetical protein
43	 71.33	0	62578..63543	+	321	53724941	-	BMA0055	-	DNA-binding transcriptional activator GcvA
44	 61.81	-1	63554..63862	-	102	53724942	-	BMA0056	-	hypothetical protein
45	 69.51	0	63859..64806	-	315	53724943	-	BMA0057	-	D-amino acid aminotransferase
46	 67.33	0	64896..66107	-	403	53724944	-	BMA0058	-	D-alanyl-D-alanine carboxypeptidase family protein
47	 73.14	+1	66216..66848	-	210	53724945	-	BMA0059	-	hypothetical protein
48	 68.84	0	66975..67619	-	214	53724946	-	BMA0060	-	hypothetical protein
49	 63.49	0	67666..67980	-	104	53724947	-	BMA0061	-	ferredoxin, 2Fe-2S
50	 74.11	+1	68097..69278	-	393	53724948	-	BMA0062	-	hypothetical protein
51	 75.12	+1	69328..69966	-	212	53724949	-	BMA0063	-	putative lipoprotein
52	 69.25	0	69985..70914	-	309	53724607	-	BMA0064	-	ABC transporter, periplasmic substrate-binding protein
53	 69.84	0	70938..71756	-	272	53724608	-	BMA0065	-	ABC transporter, ATP-binding protein
54	 69.85	0	71777..72844	-	355	53724609	-	BMA0066	-	ABC transporter, permease protein
55	 67.25	0	73171..75231	+	686	53724610	cpdB	BMA0067	-	2`,3`-cyclic-nucleotide 2`-phosphodiesterase
56	 76.50	+1	75308..76192	+	294	53724611	-	BMA0068	-	hypothetical protein
57	 77.08	+2	76578..77537	+	319	53724612	-	BMA0069	-	biotin--protein ligase
58	 72.76	+1	77543..78313	+	256	53724613	-	BMA0070	-	pantothenate kinase
59	 77.54	+2	78423..78845	+	140	53724614	-	BMA0071	-	hypothetical protein
60	 67.70	0	78903..79388	-	161	53724615	-	BMA0072	-	cytidyltransferase-like protein
61	 63.70	0	79529..80404	-	291	53724616	-	BMA0073	-	hypothetical protein
62	 74.03	+1	82258..83058	-	266	53724617	-	BMA0075	-	hypothetical protein
63	 70.29	0	83148..83975	-	275	53724618	-	BMA0076	-	enoyl-CoA hydratase
64	 68.88	0	84172..85164	-	330	53724619	-	BMA0077	-	fumarylacetoacetate hydrolase family protein
65	 70.99	0	85190..86137	+	315	53724620	-	BMA0078	-	IclR family transcriptional regulator
66	 72.12	0	86216..87535	+	439	53724621	-	BMA0079	-	hypothetical protein
67	 64.00	0	92272..93735	+	487	53726363	-	BMA0082	-	ISBma2, transposase
68	 64.51	0	93841..94164	-	107	53724622	-	BMA0083	-	hypothetical protein
69	 68.29	0	94367..96151	+	594	53724623	argS	BMA0084	-	arginyl-tRNA synthetase
70	 71.14	0	96230..97078	+	282	53724624	-	BMA0085	-	sporulation repeat-containing protein
71	 62.44	-1	97130..97768	+	212	53724625	dsbA	BMA0086	-	thiol:disulfide interchange protein DsbA
72	 70.51	0	97785..98564	+	259	53724626	-	BMA0087	-	short chain dehydrogenase
73	 70.59	0	98717..99430	-	237	53724627	-	BMA0088	-	short chain dehydrogenase
74	 68.35	0	99721..100137	+	138	53724628	-	BMA0089	-	MarR family transcriptional regulator
75	 64.54	0	100333..100473	+	46	53724629	-	BMA0090	-	hypothetical protein
76	 65.66	0	100648..102234	+	528	53724630	-	BMA0091	-	peptide ABC transporter, periplasmic peptide-binding protein
77	 75.35	+1	102468..104114	+	548	53724631	-	BMA0092	-	peptide ABC transporter, ATP-binding protein
78	 70.40	0	104409..105560	-	383	53724632	-	BMA0093	-	metallo-beta-lactamase family protein
79	 63.91	0	105778..107589	+	603	53724633	aceK	BMA0094	-	bifunctional isocitrate dehydrogenase kinase/phosphatase protein
80	 66.28	0	107647..108417	+	256	53724634	-	BMA0095	-	beta carbonic anhydrase
81	 71.36	0	108404..109597	+	397	53724635	fadA	BMA0096	-	acetyl-CoA acetyltransferase
82	 73.54	+1	109628..110311	+	227	53724636	-	BMA0097	-	short chain dehydrogenase
83	 73.29	+1	110343..110795	+	150	53724637	-	BMA0098	-	hypothetical protein
84	 69.71	0	112864..114210	+	448	53724638	bioA	BMA0100	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
85	 73.42	+1	114207..115391	+	394	53724639	bioF	BMA0101	-	8-amino-7-oxononanoate synthase
86	 74.14	+1	115388..116110	+	240	53724640	bioD	BMA0102	-	dithiobiotin synthetase
87	 67.70	0	116225..117193	+	322	53724641	bioB	BMA0103	-	biotin synthase
88	 73.11	+1	117320..118033	-	237	53724642	-	BMA0104	-	cutC family protein
89	 71.73	0	118412..119083	-	223	53724644	-	BMA0105	-	hypothetical protein
90	 68.87	0	119254..120657	-	467	53724643	-	BMA0106	-	alkaline phosphatase family protein
91	 67.82	0	122420..123112	-	230	53724645	-	BMA0108	-	hypothetical protein
92	 71.51	0	123257..123772	-	171	53724646	-	BMA0109	-	hypothetical protein
93	 61.75	-1	123794..124627	-	277	53724647	-	BMA0110	-	IS407A, transposase OrfB
94	 57.20	-2	124651..124914	-	87	53726327	-	BMA0111	-	IS407A, transposase OrfA
95	 70.53	0	124945..125229	-	94	53724648	-	BMA0112	-	hypothetical protein
96	 67.57	0	125292..125846	+	184	53724649	-	BMA0113	-	hypothetical protein
97	 67.39	0	126046..126462	-	138	53724650	-	BMA0114	-	glyoxalase family protein
98	 69.86	0	126864..127958	+	364	53724651	ada	BMA0115	-	ADA regulatory protein
99	 74.69	+1	128000..128896	+	298	53724652	alkA	BMA0116	-	DNA-3-methyladenine glycosylase II
100	 67.67	0	129068..130669	+	533	53724653	gshA	BMA0117	-	glutamate--cysteine ligase
67.65	MEAN

4.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.