IslandPath Analysis: Ureaplasma urealyticum serovar 10 str. ATCC 33699



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 26.29   STD DEV: 3.81
Ureaplasma urealyticum serovar 10 str. ATCC 33699, complete genome - 1..874478
646 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 24.96	0	17..1390	+	457	209554480	dnaA	UUR10_0001	-	chromosomal replication initiator protein DnaA
2	 29.17	0	1528..1815	+	95	209554444	rpmE	UUR10_0002	-	ribosomal protein L31
3	 31.85	+1	1957..3036	+	359	209554361	prfA	UUR10_0003	-	peptide chain release factor 1
4	 22.45	-1	3036..3908	+	290	209554022	-	UUR10_0004	-	methyltransferase, HemK family
5	 27.81	0	3895..4455	+	186	209554273	-	UUR10_0005	-	Sua5/YciO/YrdC/YwlC family protein
6	 30.30	+1	4460..4921	+	153	209554550	-	UUR10_0006	-	sugar-phosphate isomerase, RpiB/LacA/LacB family
7	 30.12	+1	5046..5606	+	186	209554136	-	UUR10_0007	-	hypothetical protein
8	 34.80	+2	5609..6085	+	158	209554442	-	UUR10_0008	-	hypothetical protein
9	 26.74	0	6232..7854	+	540	209554374	mgtE	UUR10_0009	-	magnesium transporter
10	 33.33	+1	8011..8511	+	166	209554426	-	UUR10_0010	-	50S ribosomal protein L10
11	 34.43	+2	8536..8901	+	121	209554332	rplL	UUR10_0011	-	ribosomal protein L7/L12
12	 30.43	+1	9125..10675	-	516	209554258	-	UUR10_0012	-	hypothetical protein
13	 31.61	+1	11068..11997	-	309	209554171	-	UUR10_0013	-	ribose/galactose ABC transporter
14	 25.87	0	11997..14207	-	736	209554013	-	UUR10_0014	-	ribose/galactose ABC transporter
15	 28.86	0	14210..15817	-	535	209554231	-	UUR10_0015	-	methylgalactoside permease ATP-binding protein
16	 30.55	+1	15873..17453	-	526	209554530	-	UUR10_0016	-	hypothetical protein
17	 26.94	0	17621..18418	-	265	209554090	-	UUR10_0017	-	deoxyribonuclease, TatD family
18	 26.04	0	18420..19736	-	438	209554346	trmE	UUR10_0018	-	tRNA modification GTPase TrmE
19	 21.01	-1	19739..20533	-	264	209554429	-	UUR10_0019	-	DNA polymerase III delta subunit
20	 24.93	0	20533..21222	-	229	209554298	tmk	UUR10_0020	-	thymidylate kinase
21	 26.27	0	21206..22069	-	287	209554221	-	UUR10_0021	-	triacylglycerol lipase
22	 24.63	0	22174..23196	-	340	209554415	-	UUR10_0022	-	ferrichrome ABC transporter
23	 26.33	0	23197..24138	-	313	209554386	-	UUR10_0023	-	ferrichrome ABC transporter
24	 25.41	0	24239..25639	-	466	209554619	-	UUR10_0024	-	putative ABC substrate-binding protein - iron
25	 26.72	0	25694..26797	-	367	209554091	-	UUR10_0025	-	ferrichrome ABC transporter
26	 30.87	+1	26969..28024	-	351	209553993	-	UUR10_0026	-	30S ribosomal protein S2
27	 24.82	0	28122..29096	-	324	209554311	-	UUR10_0027	-	putative ABC substrate-binding protein - iron
28	 21.29	-1	29111..29857	-	248	209554213	-	UUR10_0028	-	putative ABC substrate-binding protein - iron
29	 25.70	0	29863..31983	-	706	209554449	-	UUR10_0029	-	protein tex
30	 25.13	0	32091..34334	+	747	209554354	-	UUR10_0030	-	putative lipoprotein
31	 25.53	0	35150..35623	+	157	209554473	-	UUR10_0032	-	hypothetical protein
32	 25.10	0	35597..35839	-	80	209554576	-	UUR10_0031	-	hypothetical protein
33	 18.25	-2	35970..36506	+	178	209554241	-	UUR10_0033	-	hypothetical protein
34	 22.92	0	36559..37086	-	175	209553995	-	UUR10_0034	-	hypothetical protein
35	 24.68	0	37094..37567	-	157	209554130	-	UUR10_0035	-	hypothetical protein
36	 26.42	0	37709..39241	-	510	209554541	-	UUR10_0036	-	type I restriction enzyme
37	 24.63	0	39245..42313	-	1022	209554614	-	UUR10_0037	-	type I site-specific deoxyribonuclease, HsdR family
38	 22.05	-1	42544..42933	-	129	209554402	-	UUR10_0038	-	reStriction-modification enzyme mpuuiii s subunit
39	 21.03	-1	42999..43640	-	213	209554184	-	UUR10_0039	-	restriction modification enzyme subunit s2a
40	 20.73	-1	43791..44909	-	372	209554488	-	UUR10_0040	-	restriction-modification enzyme subunit s3a
41	 22.11	-1	45017..46237	+	406	209554404	-	UUR10_0041	-	restriction-modification enzyme subunit s3b
42	 25.13	0	46334..47722	+	462	209554319	-	UUR10_0042	-	divergent AAA domain family
43	 29.97	0	47798..49642	+	614	209554149	gidA	UUR10_0043	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
44	 24.47	0	49635..50345	+	236	209554410	gidB	UUR10_0044	-	16S rRNA methyltransferase GidB
45	 23.53	0	50361..50513	-	50	209554144	-	UUR10_0045	-	hypothetical protein
46	 22.22	-1	50551..50730	+	59	209554249	-	UUR10_0046	-	hypothetical protein
47	 22.99	0	50796..51143	+	115	209554578	-	UUR10_0047	-	hypothetical protein
48	 28.53	0	51313..53829	+	838	209554141	-	UUR10_0048	-	lipoprotein
49	 30.91	+1	53852..56200	+	782	209554417	-	UUR10_0049	-	hypothetical protein
50	 27.03	0	56231..58735	+	834	209554276	-	UUR10_0050	-	lipoprotein
51	 31.19	+1	58772..61147	+	791	209554318	-	UUR10_0051	-	hypothetical protein
52	 27.00	0	61162..63765	+	867	209554400	-	UUR10_0052	-	lipoprotein
53	 22.20	-1	63795..65285	+	496	209554486	-	UUR10_0053	-	hypothetical protein
54	 20.16	-1	65272..65787	+	171	209554571	-	UUR10_0054	-	hypothetical protein
55	 20.66	-1	65790..66704	+	304	209554304	-	UUR10_0055	-	hypothetical protein
56	 18.75	-1	66694..67173	+	159	209554060	-	UUR10_0056	-	hypothetical protein
57	 23.76	0	67163..69325	+	720	209554451	-	UUR10_0057	-	hypothetical protein
58	 27.80	0	69341..70876	+	511	209554222	-	UUR10_0058	-	ATP synthase F1, alpha subunit family protein
59	 29.60	0	70876..72240	+	454	209554506	-	UUR10_0059	-	ATP synthase F1, beta subunit family protein
60	 22.76	0	72397..73635	+	412	209554424	-	UUR10_0060	-	putative lipoprotein
61	 25.23	0	73874..77278	+	1134	209554628	-	UUR10_0061	-	endonuclease/exonuclease/phosphatase family protein
62	 27.56	0	77366..77590	+	74	209554548	secG	UUR10_0062	-	preprotein translocase, SecG subunit
63	 27.05	0	77591..79756	+	721	209554185	rnr	UUR10_0063	-	ribonuclease R
64	 23.10	0	79768..80529	+	253	209554005	-	UUR10_0064	-	hypothetical protein
65	 27.70	0	80657..81082	+	141	209554063	smpB	UUR10_0065	-	SsrA-binding protein
66	 26.38	0	81102..82841	+	579	209554119	-	UUR10_0066	-	ABC transporter, ATP-binding protein
67	 26.49	0	82816..84612	+	598	209554595	-	UUR10_0067	-	ABC transporter, ATP-binding protein
68	 23.77	0	84688..85482	+	264	209554555	-	UUR10_0068	-	hypothetical protein
69	 28.14	0	85560..87041	+	493	209554339	lysS	UUR10_0069	-	lysyl-tRNA synthetase
70	 18.73	-1	87121..87387	-	88	209554407	-	UUR10_0070	-	hypothetical protein
71	 26.55	0	87412..89238	-	608	209554183	pepF_1	UUR10_0071	-	oligoendopeptidase F
72	 23.70	0	89342..90223	+	293	209554621	-	UUR10_0072	-	phosphotransacetylase
73	 20.98	-1	90275..90889	-	204	209554342	-	UUR10_0073	-	hypothetical protein
74	 26.18	0	90927..91583	-	218	209554357	-	UUR10_0074	-	hypothetical protein
75	 23.40	0	91675..92550	-	291	209554582	-	UUR10_0075	-	iron(III) dicitrate transport ATP-binding protein fecE
76	 27.17	0	92555..93625	-	356	209554509	-	UUR10_0076	-	hemin transport system permease
77	 26.53	0	93637..95607	-	656	209554075	-	UUR10_0077	-	putative ABC substrate-binding protein - iron
78	 24.53	0	95843..97171	+	442	209554284	-	UUR10_0078	-	hemolysin
79	 23.33	0	97198..98187	-	329	209554066	-	UUR10_0079	-	hypothetical protein
80	 29.03	0	98153..99082	-	309	209554196	trxB	UUR10_0080	-	thioredoxin-disulfide reductase
81	 30.26	+1	99100..100107	-	335	209554281	lgt	UUR10_0081	-	prolipoprotein diacylglyceryl transferase
82	 27.51	0	100108..101034	-	308	209554040	hprK	UUR10_0082	-	HPr(Ser) kinase/phosphatase
83	 24.06	0	101034..102014	-	326	209554128	tilS	UUR10_0083	-	tRNA(Ile)-lysidine synthetase
84	 26.74	0	101986..102546	-	186	209554113	pth	UUR10_0084	-	peptidyl-tRNA hydrolase
85	 24.47	0	102772..103911	+	379	209554064	dnaN	UUR10_0085	-	DNA polymerase III, beta subunit
86	 29.82	0	104106..104276	+	56	209554303	-	UUR10_0086	-	hypothetical protein
87	 30.93	+1	104284..106236	+	650	209554430	gyrB	UUR10_0087	-	DNA gyrase, B subunit
88	 31.32	+1	106255..108789	+	844	209554572	gyrA	UUR10_0088	-	DNA gyrase, A subunit
89	 29.30	0	108899..109369	+	156	209554540	-	UUR10_0089	-	competence/damage-inducible protein CinA C- domain
90	 28.04	0	109410..110411	+	333	209554392	recA	UUR10_0090	-	protein RecA
91	 27.57	0	110447..111868	+	473	209554159	-	UUR10_0091	-	hdod domain family
92	 26.36	0	111943..112458	-	171	209554039	-	UUR10_0092	-	hypothetical protein
93	 21.67	-1	112612..112731	-	39	209554269	-	UUR10_0093	-	hypothetical protein
94	 22.74	0	113066..114028	-	320	209554150	-	UUR10_0094	-	hypothetical protein
95	 32.79	+1	114343..114525	-	60	209554261	-	UUR10_0095	-	hypothetical protein
96	 21.51	-1	114661..114846	-	61	209554620	-	UUR10_0096	-	hypothetical protein
97	 24.10	0	115168..115362	-	64	209554565	-	UUR10_0097	-	hypothetical protein
98	 27.32	0	115346..116044	-	232	209554313	-	UUR10_0098	-	deoxyguanosine kinase
99	 24.01	0	116241..118052	+	603	209554162	-	UUR10_0099	-	DNA polymerase III subunits gamma and tau
100	 25.67	0	118060..118359	+	99	209554533	-	UUR10_0100	-	hypothetical protein
26.29	MEAN

3.81	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.