IslandPath Analysis: Frankia sp. EAN1pec



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 70.93   STD DEV: 4.05
Frankia sp. EAN1pec, complete genome - 1..8982042
7191 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 69.07	0	71..1654	+	527	158311868	-	Franean1_0001	-	chromosomal replication initiator protein DnaA
2	 67.55	0	2937..3959	+	340	158311869	-	Franean1_0002	-	hypothetical protein
3	 72.09	0	3956..5116	+	386	158311870	-	Franean1_0003	-	DNA polymerase III, beta subunit
4	 72.85	0	5118..6491	+	457	158311871	-	Franean1_0004	-	DNA replication and repair protein RecF
5	 75.09	+1	6712..7245	+	177	158311872	-	Franean1_0005	-	hypothetical protein
6	 66.77	-1	7555..9513	+	652	158311873	-	Franean1_0006	-	DNA gyrase subunit B
7	 68.70	0	9711..12224	+	837	158311874	-	Franean1_0007	-	DNA gyrase subunit A
8	 75.95	+1	12333..14270	+	645	158311875	-	Franean1_0008	-	hypothetical protein
9	 70.71	0	15245..15862	+	205	158311876	-	Franean1_0009	-	hypothetical protein
10	 75.42	+1	15821..17065	-	414	158311877	-	Franean1_0010	-	hypothetical protein
11	 74.83	0	17052..17921	-	289	158311878	-	Franean1_0011	-	methyltransferase type 11
12	 73.28	0	17915..19291	-	458	158311879	-	Franean1_0012	-	glycosyl transferase group 1
13	 72.26	0	19531..19959	-	142	158311880	-	Franean1_0013	-	OsmC family protein
14	 77.02	+1	20169..20873	+	234	158311881	-	Franean1_0014	-	TetR family transcriptional regulator
15	 72.65	0	20881..21498	-	205	158311882	-	Franean1_0015	-	endopeptidase Clp
16	 73.19	0	21745..22848	-	367	158311883	-	Franean1_0016	-	secretory lipase
17	 70.51	0	23241..24332	+	363	158311884	-	Franean1_0017	-	SNARE associated Golgi protein
18	 68.14	0	24683..25021	-	112	158311885	-	Franean1_0018	-	nitrogen regulatory protein P-II
19	 72.19	0	25136..25678	+	180	158311886	-	Franean1_0019	-	PEBP family protein
20	 70.30	0	25853..26017	+	54	158311887	-	Franean1_0020	-	hypothetical protein
21	 67.74	0	26159..26716	-	185	158311888	-	Franean1_0021	-	binding-protein-dependent transport systems inner membrane component
22	 67.78	0	26953..28206	-	417	158311889	-	Franean1_0022	-	extracellular solute-binding protein
23	 68.60	0	28203..29546	-	447	158311890	-	Franean1_0023	-	spermidine/putrescine ABC transporter ATPase subunit
24	 77.12	+1	29898..30662	+	254	158311891	-	Franean1_0024	-	mycothiol-dependent maleylpyruvate isomerase
25	 71.09	0	30889..31950	+	353	158311892	-	Franean1_0025	-	cobyrinic acid ac-diamide synthase
26	 65.43	-1	35609..36013	-	134	158311893	-	Franean1_0027	-	hypothetical protein
27	 67.75	0	36044..36967	-	307	158311894	-	Franean1_0028	-	hypothetical protein
28	 73.09	0	37290..37865	+	191	158311895	-	Franean1_0029	-	hypothetical protein
29	 72.80	0	37862..38839	+	325	158311896	-	Franean1_0030	-	hypothetical protein
30	 72.18	0	39584..40471	-	295	158311897	-	Franean1_0031	-	hypothetical protein
31	 68.66	0	40475..41677	-	400	158311898	-	Franean1_0032	-	protein-L-isoaspartate(D-aspartate) O-methyltransferase
32	 73.22	0	42120..42485	-	121	158311899	-	Franean1_0033	-	hypothetical protein
33	 68.92	0	42461..43171	-	236	158311900	-	Franean1_0034	-	hypothetical protein
34	 70.65	0	43221..43496	-	91	158311901	-	Franean1_0035	-	hypothetical protein
35	 67.36	0	43699..44568	+	289	158311902	-	Franean1_0036	-	helix-turn-helix domain-containing protein
36	 70.48	0	44565..44774	+	69	158311903	-	Franean1_0037	-	hypothetical protein
37	 70.77	0	45693..46814	+	373	158311904	-	Franean1_0038	-	integrase family protein
38	 72.86	0	46811..47149	+	112	158311905	-	Franean1_0039	-	XRE family transcriptional regulator
39	 74.39	0	47146..48660	+	504	158311906	-	Franean1_0040	-	hypothetical protein
40	 69.11	0	48701..49600	-	299	158311907	-	Franean1_0041	-	aminoglycoside phosphotransferase
41	 69.48	0	49995..50705	+	236	158311908	-	Franean1_0042	-	resolvase domain-containing protein
42	 70.22	0	51034..56460	+	1808	158311909	-	Franean1_0043	-	hypothetical protein
43	 72.11	0	56470..56763	+	97	158311910	-	Franean1_0044	-	hypothetical protein
44	 70.85	0	56774..60883	+	1369	158311911	-	Franean1_0045	-	hypothetical protein
45	 67.54	0	61226..61570	-	114	158311912	-	Franean1_0046	-	hypothetical protein
46	 66.67	-1	61583..61909	-	108	158311913	-	Franean1_0047	-	hypothetical protein
47	 69.61	0	61929..62132	+	67	158311914	-	Franean1_0048	-	hypothetical protein
48	 65.03	-1	62283..63137	-	284	158311915	-	Franean1_0049	-	hypothetical protein
49	 63.56	-1	63167..63649	-	160	158311916	-	Franean1_0050	-	hypothetical protein
50	 68.26	0	63682..65379	+	565	158311917	-	Franean1_0051	-	hypothetical protein
51	 70.13	0	65379..66158	+	259	158311918	-	Franean1_0052	-	short-chain dehydrogenase/reductase SDR
52	 68.63	0	66165..67283	-	372	158311919	-	Franean1_0053	-	hypothetical protein
53	 71.52	0	67290..68258	-	322	158311920	-	Franean1_0054	-	putative O-methyltransferase
54	 72.73	0	68240..69427	-	395	158311921	-	Franean1_0055	-	lanthionine synthetase C family protein
55	 72.43	0	69424..72531	-	1035	158311922	-	Franean1_0056	-	lantibiotic dehydratase domain-containing protein
56	 64.58	-1	72610..72801	-	63	158311923	-	Franean1_0057	-	hypothetical protein
57	 69.51	0	72866..74167	-	433	158311924	-	Franean1_0058	-	protein-L-isoaspartate(D-aspartate) O-methyltransferase
58	 67.57	0	74912..76456	+	514	158311925	-	Franean1_0059	-	serine/threonine protein kinase
59	 75.96	+1	76584..76895	-	103	158311926	-	Franean1_0060	-	hypothetical protein
60	 67.99	0	76974..77804	+	276	158311927	-	Franean1_0061	-	hypothetical protein
61	 69.62	0	77817..79001	+	394	158311928	-	Franean1_0062	-	hypothetical protein
62	 72.67	0	80009..80491	-	160	158311929	-	Franean1_0064	-	hypothetical protein
63	 69.65	0	80561..80929	+	122	158311930	-	Franean1_0065	-	hypothetical protein
64	 55.35	-2	81495..82970	-	491	158311931	-	Franean1_0066	-	peptidase S8 and S53 subtilisin kexin sedolisin
65	 51.85	-2	82991..83287	-	98	158311932	-	Franean1_0067	-	hypothetical protein
66	 72.16	0	83438..83728	-	96	158311933	-	Franean1_0068	-	hypothetical protein
67	 68.75	0	83908..84387	+	159	158311934	-	Franean1_0069	-	hypothetical protein
68	 66.99	0	84437..85057	-	206	158311935	-	Franean1_0070	-	IS630 family transposase
69	 69.63	0	84982..85521	-	179	158311936	-	Franean1_0071	-	IS630 family transposase
70	 73.66	0	86789..89791	+	1000	158311937	-	Franean1_0072	-	LuxR family transcriptional regulator
71	 69.68	0	90092..91351	+	419	158311938	-	Franean1_0073	-	glycosyl transferase family protein
72	 66.58	-1	91442..92632	+	396	158311939	-	Franean1_0074	-	Rieske (2Fe-2S) domain-containing protein
73	 67.25	0	92648..93160	+	170	158311940	-	Franean1_0075	-	hypothetical protein
74	 68.27	0	93263..93886	+	207	158311941	-	Franean1_0076	-	hypothetical protein
75	 68.87	0	94301..95116	-	271	158311942	-	Franean1_0077	-	short-chain dehydrogenase/reductase SDR
76	 71.86	0	95113..95979	-	288	158311943	-	Franean1_0078	-	short-chain dehydrogenase/reductase SDR
77	 67.21	0	96103..96657	+	184	158311944	-	Franean1_0079	-	PadR-like family transcriptional regulator
78	 72.63	0	97102..97470	-	122	158311945	-	Franean1_0080	-	hypothetical protein
79	 68.57	0	97795..99000	-	401	158311946	-	Franean1_0081	-	integral membrane sensor signal transduction histidine kinase
80	 68.33	0	98997..99656	-	219	158311947	-	Franean1_0082	-	two component transcriptional regulator
81	 71.83	0	99828..100331	+	167	158311948	-	Franean1_0083	-	hypothetical protein
82	 70.17	0	100328..101554	+	408	158311949	-	Franean1_0084	-	peptidoglycan binding domain-containing protein
83	 70.06	0	101551..102258	+	235	158311950	-	Franean1_0085	-	ABC transporter related
84	 70.84	0	102255..103571	+	438	158311951	-	Franean1_0086	-	hypothetical protein
85	 63.45	-1	103928..104269	+	113	158311952	-	Franean1_0087	-	hypothetical protein
86	 69.04	0	104451..105926	-	491	158311953	-	Franean1_0088	-	aldo/keto reductase
87	 73.20	0	106070..106681	+	203	158311954	-	Franean1_0089	-	ECF subfamily RNA polymerase sigma-24 factor
88	 71.79	0	106678..107595	+	305	158311955	-	Franean1_0090	-	hypothetical protein
89	 74.92	0	107696..108688	-	330	158311956	-	Franean1_0091	-	alcohol dehydrogenase
90	 72.10	0	108808..109800	-	330	158311957	-	Franean1_0092	-	GntR family transcriptional regulator
91	 71.38	0	110033..110944	+	303	158311958	-	Franean1_0093	-	alpha/beta hydrolase fold
92	 67.38	0	111434..112696	+	420	158311959	-	Franean1_0094	-	amidohydrolase 2
93	 73.11	0	112875..113852	-	325	158311960	-	Franean1_0095	-	alcohol dehydrogenase
94	 73.63	0	113892..114695	-	267	158311961	-	Franean1_0096	-	enoyl-CoA hydratase/isomerase
95	 67.94	0	114692..115714	-	340	158311962	-	Franean1_0097	-	aminoglycoside phosphotransferase
96	 68.05	0	115711..117012	-	433	158311963	-	Franean1_0098	-	acyl-CoA dehydrogenase domain-containing protein
97	 73.46	0	117226..118992	-	588	158311964	-	Franean1_0099	-	diguanylate cyclase
98	 71.52	0	119081..119740	-	219	158311965	-	Franean1_0100	-	TetR family transcriptional regulator
99	 73.73	0	119884..121128	-	414	158311966	-	Franean1_0101	-	hypothetical protein
100	 64.40	-1	121434..122270	+	278	158311967	-	Franean1_0102	-	undecaprenyl pyrophosphate phosphatase
70.93	MEAN

4.05	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.