IslandPath Analysis: Burkholderia mallei ATCC 23344



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 68.05   STD DEV: 5.07
Burkholderia mallei ATCC 23344 chromosome 2, complete sequence - 1..2325379
2029 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 62.63	-1	1139..2326	+	395	53716039	-	BMAA0001	-	hypothetical protein
2	 64.46	0	2420..3463	-	347	53716038	-	BMAA0002	-	phage integrase family protein
3	 68.48	0	3626..3955	-	109	53716037	-	BMAA0003	-	hypothetical protein
4	 68.97	0	4086..4694	-	202	53716036	-	BMAA0004	-	DNA-binding protein
5	 67.08	0	4862..6061	+	399	53716035	kbl	BMAA0005	-	2-amino-3-ketobutyrate coenzyme A ligase
6	 64.34	0	6074..7105	+	343	53716034	tdh	BMAA0006	-	L-threonine 3-dehydrogenase
7	 67.43	0	7440..8093	-	217	53716033	-	BMAA0007	-	YceI like family protein
8	 70.55	0	8183..8800	+	205	53716025	-	BMAA0008	-	TetR family transcriptional regulator
9	 63.12	0	8901..9380	+	159	53716024	-	BMAA0009	-	hypothetical protein
10	 66.86	0	9602..10618	-	338	53717536	-	BMAA0010	-	succinylglutamate desuccinylase / aspartoacylase family protein
11	 67.40	0	10921..12006	-	361	53716022	ttuC	BMAA0011	-	tartrate dehydrogenase
12	 67.21	0	12175..13092	+	305	53716023	-	BMAA0012	-	LysR family transcriptional regulator
13	 67.11	0	13578..14255	+	225	53716021	-	BMAA0013	-	hypothetical protein
14	 65.71	0	14470..15093	+	207	53716020	-	BMAA0014	-	glutathione S-transferase
15	 72.30	0	15528..15935	-	135	53716019	-	BMAA0015	-	hypothetical protein
16	 65.73	0	16072..17244	-	390	53716018	-	BMAA0016	-	patatin-like phospholipase
17	 65.65	0	17307..18092	-	261	53716011	bdhA-1	BMAA0017	-	3-hydroxybutyrate dehydrogenase
18	 64.10	0	18139..18879	-	246	53716010	adc	BMAA0018	-	acetoacetate decarboxylase
19	 71.69	0	19338..19934	+	198	53716009	-	BMAA0019	-	PAP2 family protein
20	 71.08	0	20387..20635	+	82	53716008	-	BMAA0020	-	hypothetical protein
21	 68.36	0	20959..21786	-	275	53716007	-	BMAA0021	-	siderophore-interacting protein
22	 68.36	0	21826..22533	-	235	53716006	-	BMAA0022	-	PadR family transcriptional regulator
23	 65.25	0	22941..24347	+	468	53716005	-	BMAA0023	-	cytochrome P450-related protein
24	 54.98	-2	24467..24697	+	76	53716004	-	BMAA0024	-	hypothetical protein
25	 64.55	0	24871..25722	+	283	53715995	-	BMAA0025	-	hypothetical protein
26	 66.67	0	25719..26552	+	277	53715994	-	BMAA0026	-	hypothetical protein
27	 66.87	0	26537..28492	+	651	53715993	-	BMAA0027	-	radical SAM domain/B12 binding domain-containing protein
28	 68.79	0	28506..29495	+	329	53715992	-	BMAA0028	-	hypothetical protein
29	 67.95	0	29667..30287	-	206	53715991	-	BMAA0029	-	LysE family protein
30	 69.46	0	30395..31288	+	297	53715990	-	BMAA0030	-	chromosome replication initiation inhibitor protein
31	 67.20	0	31335..32090	-	251	53715989	-	BMAA0031	-	Crp/FNR family transcriptional regulator
32	 67.09	0	32240..32707	-	155	53715988	-	BMAA0032	-	universal stress protein
33	 64.78	0	33031..33348	+	105	53715984	-	BMAA0033	-	hypothetical protein
34	 70.96	0	33454..33756	-	100	53715983	-	BMAA0034	-	hypothetical protein
35	 71.41	0	34127..35707	+	526	53715982	-	BMAA0035	-	aldehyde dehydrogenase (NADP) family protein
36	 66.14	0	35713..36654	+	313	53715981	-	BMAA0036	-	putative gluconolactonase
37	 70.87	0	36711..37019	-	102	77358861	-	BMAA0037	-	hypothetical protein
38	 67.17	0	36994..37392	-	132	77358860	-	BMAA0038	-	hypothetical protein
39	 69.78	0	37432..37848	-	138	53715980	-	BMAA0039	-	hypothetical protein
40	 59.92	-1	38115..38351	+	78	53715979	-	BMAA0040	-	hypothetical protein
41	 66.18	0	38376..39398	+	340	53715978	-	BMAA0041	-	putative serine O-acetyltransferase
42	 66.79	0	39587..40390	-	267	53715974	-	BMAA0042	-	short chain dehydrogenase/reductase family oxidoreductase
43	 66.94	0	40391..41119	-	242	53715973	folE	BMAA0043	-	GTP cyclohydrolase I
44	 68.29	0	41257..42180	-	307	53715972	-	BMAA0044	-	LysR family transcriptional regulator
45	 68.87	0	42297..43520	+	407	53715971	pobA	BMAA0045	-	4-hydroxybenzoate 3-monooxygenase
46	 67.37	0	43728..44441	+	237	53715970	pcaI	BMAA0046	-	3-oxoadipate CoA-transferase, alpha subunit
47	 65.91	0	44460..45116	+	218	53715969	-	BMAA0047	-	3-oxoadipate CoA-succinyl transferase beta subunit
48	 71.96	0	45252..46610	+	452	53715968	pcaB	BMAA0048	-	3-carboxy-cis,cis-muconate cycloisomerase
49	 69.17	0	47989..49344	+	451	53715962	pcaK	BMAA0050	-	4-hydroxybenzoate transporter
50	 65.86	0	49412..49660	-	82	53715961	-	BMAA0051	-	hypothetical protein
51	 63.59	0	49761..50378	-	205	53715960	-	BMAA0052	-	LysE family protein
52	 70.25	0	50573..51829	-	418	53715959	-	BMAA0053	-	hypothetical protein
53	 64.40	0	51816..52433	-	205	53715958	-	BMAA0054	-	hypothetical protein
54	 68.71	0	53833..54810	-	325	53715957	-	BMAA0056	-	chromate resistance protein ChrB
55	 69.05	0	54824..55285	-	153	53715950	-	BMAA0057	-	hypothetical protein
56	 67.91	0	55243..55806	+	187	53717612	-	BMAA0057.1	-	hypothetical protein
57	 62.84	-1	55803..56351	+	182	53715949	-	BMAA0059	-	hypothetical protein
58	 67.81	0	56356..56706	+	116	77358796	-	BMAA0060	-	hypothetical protein
59	 66.67	0	56742..57410	+	222	53715948	-	BMAA0061	-	RNA polymerase sigma factor
60	 70.25	0	57887..63799	+	1970	53715947	uvrA2	BMAA0062	-	excinuclease ABC, subunit A, form 2
61	 57.52	-2	64374..64679	+	101	53715946	-	BMAA0063	-	hypothetical protein
62	 60.88	-1	64833..65126	-	97	53715945	-	BMAA0064	-	hypothetical protein
63	 63.37	0	65214..65699	+	161	77358851	-	BMAA0065	-	hypothetical protein
64	 58.61	-1	65736..66008	+	90	77358850	-	BMAA0066	-	hypothetical protein
65	 53.03	-2	66015..66146	-	43	77358849	-	BMAA0067	-	hypothetical protein
66	 61.33	-1	66291..66590	-	99	53717498	-	BMAA0068	-	H-NS histone family protein
67	 63.27	0	67140..68492	+	450	53716561	kgtP	BMAA0069	-	alpha-ketoglutarate permease
68	 66.96	0	70452..71795	+	447	53716560	dctD-2	BMAA0071	-	C4-dicarboxylate transport transcriptional regulatory protein
69	 59.77	-1	71739..72086	-	115	53716559	-	BMAA0072	-	hypothetical protein
70	 70.56	0	72263..72493	+	76	53716558	-	BMAA0073	-	hypothetical protein
71	 53.59	-2	73015..73167	-	50	77358724	-	BMAA0074	-	hypothetical protein
72	 69.30	0	73256..73825	-	189	77358722	-	BMAA0075	-	hypothetical protein
73	 68.00	0	74036..75988	+	650	53716555	-	BMAA0076	-	hypothetical protein
74	 69.43	0	76239..76745	+	168	53716554	-	BMAA0077	-	AraC family transcriptional regulator
75	 74.32	+1	76727..76948	-	73	77358721	-	BMAA0078	-	hypothetical protein
76	 67.49	0	77117..79312	+	731	53716553	-	BMAA0079	-	phospholipase C
77	 64.10	0	79510..79665	+	51	53716552	-	BMAA0080	-	hypothetical protein
78	 60.89	-1	79804..80496	+	230	53716551	-	BMAA0081	-	hypothetical protein
79	 56.82	-2	80396..80659	+	87	53717442	-	BMAA0082	-	IS407A, transposase OrfA
80	 61.75	-1	80683..81516	+	277	53716550	-	BMAA0083	-	IS407A, transposase OrfB
81	 64.73	0	81594..81851	+	85	77358980	-	BMAA0084	-	ISBma2, transposase, truncation
82	 68.15	0	81995..84358	-	787	53716544	-	BMAA0085	-	putative exopolysaccharide tyrosine-protein kinase
83	 69.45	0	84483..85811	-	442	53716543	-	BMAA0086	-	hypothetical protein
84	 69.20	0	85843..87186	-	447	53716542	-	BMAA0087	-	hypothetical protein
85	 71.30	0	87451..87774	-	107	53716850	-	BMAA0088	-	hypothetical protein
86	 67.29	0	88030..89313	-	427	53716849	-	BMAA0089	-	hypothetical protein
87	 70.83	0	89404..91158	-	584	53716848	-	BMAA0090	-	putative lipoprotein
88	 62.96	-1	91464..91733	-	89	53716847	-	BMAA0091	-	hypothetical protein
89	 71.15	0	91854..92009	-	51	77358909	-	BMAA0092	-	hypothetical protein
90	 67.75	0	92043..93977	-	644	53716839	-	BMAA0093	-	serine protease
91	 73.33	+1	94340..94519	-	59	53716838	-	BMAA0094	-	hypothetical protein
92	 49.36	-2	94619..94774	-	51	77358908	-	BMAA0095	-	hypothetical protein
93	 68.22	0	94913..95362	-	149	77358907	-	BMAA0096	-	hypothetical protein
94	 68.44	0	95522..96985	-	487	53716837	-	BMAA0097	-	GGDEF domain-containing protein
95	 69.42	0	97343..97741	-	132	53716836	-	BMAA0098	-	hypothetical protein
96	 68.62	0	97788..98762	-	324	53716835	-	BMAA0099	-	alpha/beta fold family hydrolase
97	 68.61	0	98768..100366	-	532	53716834	-	BMAA0100	-	hypothetical protein
98	 70.74	0	100363..101271	-	302	53716827	-	BMAA0101	-	short chain dehydrogenase/reductase family oxidoreductase
99	 69.12	0	101374..102024	+	216	53716826	-	BMAA0102	-	TetR family transcriptional regulator
100	 73.13	+1	102021..102221	+	66	53716825	-	BMAA0103	-	hypothetical protein
68.05	MEAN

5.07	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.