IslandPath Analysis: Burkholderia mallei SAVP1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.79   STD DEV: 4.90
Burkholderia mallei SAVP1 chromosome I, complete sequence - 1..3497479
3455 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 67.68	0	1066..1263	+	65	121601251	-	BMASAVP1_A0002	-	putative outer membrane protein
2	 63.21	0	1499..2596	-	365	121600478	hppD-1	BMASAVP1_A0003	-	4-hydroxyphenylpyruvate dioxygenase
3	 64.57	0	2595..3263	+	222	121599445	-	BMASAVP1_A0004	-	AsnC family transcriptional regulator
4	 65.74	0	3382..4029	-	215	121599524	-	BMASAVP1_A0005	-	acetyltransferase
5	 64.83	0	4271..4870	-	199	121598770	-	BMASAVP1_A0006	-	TetR family transcriptional regulator
6	 70.52	0	4897..5727	-	276	121600252	-	BMASAVP1_A0007	-	hypothetical protein
7	 67.77	0	5849..6937	-	362	121598378	paaK	BMASAVP1_A0008	-	phenylacetate-CoA oxygenase/reductase, PaaK subunit
8	 73.75	+1	6939..7559	-	206	121601474	paaJ	BMASAVP1_A0009	-	phenylacetate-CoA oxygenase, PaaJ subunit
9	 67.91	0	7595..8398	-	267	121600130	paaI	BMASAVP1_A0010	-	phenylacetate-CoA oxygenase, PaaI subunit
10	 63.16	0	8409..8750	-	113	121598678	paaH	BMASAVP1_A0011	-	phenylacetate-CoA oxygenase subunit PaaB
11	 65.57	0	8756..9754	-	332	121598222	paaG	BMASAVP1_A0012	-	phenylacetate-CoA oxygenase subunit PaaA
12	 69.63	0	10231..11682	+	483	121600807	-	BMASAVP1_A0013	-	lipolytic enzyme, G-D-S-L
13	 57.20	-2	14695..14958	+	87	121601466	-	BMASAVP1_A0017	-	IS407A, transposase OrfA
14	 61.75	-1	14982..15815	+	277	121598764	-	BMASAVP1_A0018	-	IS407A, transposase OrfB
15	 64.25	0	16262..17668	+	468	121599518	-	BMASAVP1_A0019	-	amino acid permease
16	 69.67	0	17982..18347	-	121	121600986	-	BMASAVP1_A0021	-	cytochrome c family protein
17	 69.16	0	18344..19144	-	266	121598383	-	BMASAVP1_A0022	-	putative phospholipid-binding protein
18	 69.26	0	19163..19741	-	192	121599014	-	BMASAVP1_A0023	-	phosphoheptose isomerase
19	 74.25	+1	19864..20298	-	144	121598396	-	BMASAVP1_A0024	-	hypothetical protein
20	 70.61	0	20345..21232	+	295	121598681	-	BMASAVP1_A0025	-	tetrapyrrole methylase family protein
21	 63.46	0	21261..22790	+	509	121601631	-	BMASAVP1_A0026	-	ISBma2, transposase
22	 69.36	0	23000..24262	-	420	121600592	-	BMASAVP1_A0027	-	putative chaperone protein
23	 67.82	0	24860..25465	-	201	121598895	-	BMASAVP1_A0028	-	nitroreductase family protein
24	 75.56	+1	25553..26002	+	149	121600386	-	BMASAVP1_A0030	-	hypothetical protein
25	 70.09	0	25962..27245	-	427	121599830	-	BMASAVP1_A0029	-	major facilitator transporter
26	 69.77	0	27404..28048	+	214	121600155	-	BMASAVP1_A0031	-	TetR family transcriptional regulator
27	 65.71	0	28386..29009	+	207	121601101	-	BMASAVP1_A0032	-	hypothetical protein
28	 66.56	0	29094..29990	-	298	121598268	-	BMASAVP1_A0033	-	hypothetical protein
29	 72.12	0	30118..31254	-	378	121599904	-	BMASAVP1_A0034	-	hypothetical protein
30	 76.32	+1	31423..31536	+	37	121600838	-	BMASAVP1_A0035	-	hypothetical protein
31	 64.97	0	31611..32729	-	372	121601220	-	BMASAVP1_A0036	-	acyltransferase family protein
32	 73.97	+1	32728..33138	+	136	121599244	-	BMASAVP1_A0038	-	hypothetical protein
33	 69.44	0	33132..33635	-	167	121598872	-	BMASAVP1_A0037	-	putative lipoprotein
34	 64.22	0	34240..36405	+	721	121600781	-	BMASAVP1_A0040	-	M1 family peptidase
35	 72.11	0	36363..36509	-	48	121600450	-	BMASAVP1_A0039	-	hypothetical protein
36	 64.50	0	37017..37385	+	122	121598574	-	BMASAVP1_A0041	-	hypothetical protein
37	 66.67	0	37461..37697	+	78	121598977	-	BMASAVP1_A0042	-	hypothetical protein
38	 64.07	0	37800..38030	+	76	121600058	-	BMASAVP1_A0043	-	hypothetical protein
39	 67.22	0	38646..39914	+	422	121599426	-	BMASAVP1_A0044	-	putative secretion protein
40	 66.71	0	39929..42190	+	753	121598424	-	BMASAVP1_A0045	-	putative toxin secretion ABC transporter, ATP-binding protein
41	 69.00	0	42220..43635	+	471	121601056	-	BMASAVP1_A0046	-	TolC family type I secretion outer membrane protein
42	 72.83	+1	43846..44802	-	318	121600266	-	BMASAVP1_A0047	-	hypothetical protein
43	 60.45	-1	44928..45779	+	283	121599578	-	BMASAVP1_A0048	-	D-alanyl-D-alanine carboxypeptidase family protein
44	 64.04	0	45930..46043	+	37	121599312	-	BMASAVP1_A0049	-	hypothetical protein
45	 67.64	0	46051..49944	+	1297	121601535	-	BMASAVP1_A0050	-	hypothetical protein
46	 66.46	0	49941..50930	+	329	121600428	-	BMASAVP1_A0051	-	hypothetical protein
47	 70.74	0	50935..51867	+	310	121600594	-	BMASAVP1_A0052	-	ompA family protein
48	 69.43	0	52066..53187	-	373	121599874	-	BMASAVP1_A0053	-	hypothetical protein
49	 68.63	0	53277..55970	-	897	121599193	-	BMASAVP1_A0054	-	ClpA/B type protease
50	 70.03	0	56004..57104	-	366	121599719	-	BMASAVP1_A0055	-	hypothetical protein
51	 66.99	0	57068..58906	-	612	121601003	-	BMASAVP1_A0056	-	hypothetical protein
52	 63.35	0	58986..59468	-	160	121600053	-	BMASAVP1_A0057	-	hypothetical protein
53	 61.75	-1	59607..60440	-	277	121600215	-	BMASAVP1_A0058	-	A, transposase OrfB
54	 57.20	-2	60464..60727	-	87	121599265	-	BMASAVP1_A0059	-	transposase subfamily protein
55	 50.83	-2	60800..60919	-	39	121598732	-	BMASAVP1_A0060	-	hypothetical protein
56	 71.74	0	61205..61795	-	196	121601305	ssb	BMASAVP1_A0061	-	single-strand DNA-binding protein
57	 66.08	0	61909..63096	-	395	121599951	-	BMASAVP1_A0062	-	major facilitator family transporter
58	 66.21	0	63310..66177	+	955	121600559	uvrA	BMASAVP1_A0063	-	excinuclease ABC, A subunit
59	 76.32	+1	66183..66296	+	37	121599381	-	BMASAVP1_A0064	-	hypothetical protein
60	 65.65	0	66396..67481	+	361	121598411	-	BMASAVP1_A0065	-	hypothetical protein
61	 67.01	0	67777..68658	-	293	121601300	purU	BMASAVP1_A0066	-	formyltetrahydrofolate deformylase
62	 71.33	0	68710..69567	-	285	121600730	-	BMASAVP1_A0067	-	thiamin pyrophosphokinase-related protein
63	 70.60	0	69580..70164	-	194	121600912	-	BMASAVP1_A0068	-	LysE family protein
64	 66.18	0	70258..70878	-	206	121600265	-	BMASAVP1_A0069	-	adenine phosphoribosyltransferase
65	 69.25	0	70904..72913	-	669	121599098	-	BMASAVP1_A0070	-	monovalent cation:proton antiporter-2 (CPA2) family protein
66	 69.72	0	73041..74024	+	327	121598391	-	BMASAVP1_A0071	-	carbohydrate isomerase KpsF/GutQ family protein
67	 72.59	0	74024..74563	+	179	121598315	-	BMASAVP1_A0072	-	YrbI family phosphatase
68	 67.80	0	74569..75183	+	204	121601425	-	BMASAVP1_A0073	-	hypothetical protein
69	 69.82	0	75202..75867	+	221	121599216	-	BMASAVP1_A0074	-	hypothetical protein
70	 66.54	0	75864..76640	+	258	121598282	-	BMASAVP1_A0075	-	ABC transporter, ATP-binding protein
71	 64.27	0	76776..78317	+	513	121600725	rpoN	BMASAVP1_A0076	-	RNA polymerase factor sigma-54
72	 57.78	-2	78467..78826	+	119	121599767	-	BMASAVP1_A0077	-	ribosomal subunit interface protein
73	 63.78	0	79050..79568	+	172	121599600	ptsN	BMASAVP1_A0078	-	PTS system, nitrogen regulatory IIA protein
74	 67.49	0	79697..80665	+	322	121598536	hprK	BMASAVP1_A0079	-	HPr kinase/phosphorylase
75	 67.67	0	80751..81644	+	297	121601018	-	BMASAVP1_A0080	-	hypothetical protein
76	 66.82	0	81671..82303	+	210	121600005	-	BMASAVP1_A0081	-	ATP-dependent protease La
77	 72.99	+1	82691..83797	-	368	121599895	mutY	BMASAVP1_A0082	-	A/G-specific adenine glycosylase
78	 70.82	0	83802..84620	-	272	121599146	mutM	BMASAVP1_A0083	-	formamidopyrimidine-DNA glycosylase
79	 69.03	0	84709..86529	+	606	121600080	-	BMASAVP1_A0084	-	TPR domain-containing protein
80	 71.70	0	86526..87161	+	211	121600809	lolB	BMASAVP1_A0085	-	outer membrane lipoprotein LolB
81	 63.49	0	87195..88076	+	293	121599499	ispE	BMASAVP1_A0086	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
82	 64.05	0	88254..89210	+	318	121599309	prsA	BMASAVP1_A0088	-	ribose-phosphate pyrophosphokinase
83	 64.39	0	89374..89988	+	204	121600473	rplY	BMASAVP1_A0089	-	50S ribosomal protein L25/general stress protein Ctc
84	 67.49	0	90102..90707	+	201	121601224	pth	BMASAVP1_A0090	-	peptidyl-tRNA hydrolase
85	 68.34	0	90793..91866	+	357	121598180	hisC-2	BMASAVP1_A0091	-	histidinol-phosphate aminotransferase
86	 61.42	-1	92045..92311	-	88	121599810	-	BMASAVP1_A0092	-	ferredoxin
87	 62.28	-1	92374..92874	-	166	121600724	coaD	BMASAVP1_A0093	-	phosphopantetheine adenylyltransferase
88	 73.05	+1	92985..93611	-	208	121601416	-	BMASAVP1_A0094	-	putative methyltransferase
89	 70.76	0	93863..95182	+	439	121600561	ftsY	BMASAVP1_A0096	-	signal recognition particle-docking protein FtsY
90	 79.67	+2	95179..95301	-	40	121599799	-	BMASAVP1_A0095	-	hypothetical protein
91	 66.20	0	95339..95983	-	214	121600032	maiA	BMASAVP1_A0097	-	maleylacetoacetate isomerase
92	 72.57	0	95986..96273	+	95	121598950	-	BMASAVP1_A0098	-	hypothetical protein
93	 66.95	0	96368..98812	+	814	121598492	nirB-1	BMASAVP1_A0099	-	nitrite reductase [NAD(P)H], large subunit
94	 71.61	0	98812..99276	+	154	121599396	nirD-1	BMASAVP1_A0100	-	nitrite reductase [NAD(P)H], small subunit
95	 73.04	+1	99273..102128	+	951	121600314	-	BMASAVP1_A0101	-	molybdopterin oxidoreductase family protein
96	 71.97	0	102125..103105	+	326	121601302	-	BMASAVP1_A0102	-	hypothetical protein
97	 70.92	0	103746..104567	+	273	121600927	-	BMASAVP1_A0103	-	acetyltransferase
98	 68.80	0	105003..106643	+	546	121599825	leuA-1	BMASAVP1_A0104	-	2-isopropylmalate synthase
99	 67.71	0	106970..107353	-	127	121600894	-	BMASAVP1_A0105	-	hypothetical protein
100	 61.90	-1	107398..107943	-	181	121599884	-	BMASAVP1_A0106	-	hypothetical protein
67.79	MEAN

4.90	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.