IslandPath Analysis: Streptococcus equi subsp. zooepidemicus MGCS10565



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.87   STD DEV: 4.13
Streptococcus equi subsp. zooepidemicus MGCS10565, complete genome - 1..2024171
1893 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 38.43	0	233..1585	+	450	195977157	dnaA	Sez_0001	-	chromosomal replication initiator protein DnaA
2	 38.43	0	1742..2878	+	378	195977158	dnaN	Sez_0002	-	DNA polymerase III beta subunit
3	 36.36	-1	2956..3153	+	65	195977159	-	Sez_0003	-	hypothetical protein
4	 38.52	0	3274..3639	+	121	195977160	-	Sez_0004	-	hypothetical protein
5	 42.47	0	3723..4838	+	371	195977161	-	Sez_0005	-	GTP-dependent nucleic acid-binding protein EngD
6	 33.16	-2	4995..5564	+	189	195977162	pth	Sez_0006	-	peptidyl-tRNA hydrolase Pth
7	 38.97	0	5567..9061	+	1164	195977163	-	Sez_0007	-	transcription-repair coupling factor
8	 37.37	-1	9030..10541	+	503	195977164	-	Sez_0008	-	polysaccharide biosynthesis family protein
9	 35.90	-1	10572..10844	+	90	195977165	-	Sez_0009	-	heat shock protein 15
10	 33.33	-2	10855..11202	+	115	195977166	-	Sez_0010	-	cell division protein DivIC
11	 38.15	0	11344..12630	+	428	195977167	-	Sez_0011	-	beta-lactamase
12	 37.77	0	12627..13910	+	427	195977168	-	Sez_0012	-	tRNA(Ile)-lysidine synthase
13	 36.83	-1	13915..14457	+	180	195977169	hpt	Sez_0013	-	hypoxanthine-guanine phosphoribosyltransferase protein Hpt
14	 42.50	0	14533..16452	+	639	195977170	ftsH	Sez_0014	-	cell division protein FtsH-like
15	 37.02	-1	16542..18005	+	487	195977171	-	Sez_0015	-	cationic amino acid transporter - APC superfamily
16	 33.56	-2	24838..25701	+	287	195977172	mreC	Sez_0016	-	rod shape-determining protein MreC
17	 32.94	-2	25704..26207	+	167	195977173	mreD	Sez_0017	-	cell shape-determining protein MreD
18	 45.38	0	26303..27481	+	392	195977174	-	Sez_0018	-	secreted antigen GbpB/SagA/PcsB, putative peptidoglycan hydrolase
19	 39.90	0	27574..28548	+	324	195977175	prs	Sez_0019	-	ribose-phosphate pyrophosphokinase protein Prs
20	 37.48	-1	28908..29678	+	256	195977176	recO	Sez_0020	-	DNA recombination and repair protein RecO
21	 41.87	0	29794..30801	+	335	195977177	plsX	Sez_0021	-	fatty acid/phospholipid synthesis protein PlsX
22	 32.93	-2	30794..31042	+	82	195977178	acpP	Sez_0022	-	acyl carrier protein AcpP
23	 40.65	0	31193..31903	+	236	195977179	purC	Sez_0023	-	phosphoribosylaminoimidazole-succinocarboxamide synthase PurC
24	 44.29	0	32082..35822	+	1246	195977180	purL	Sez_0024	-	phosphoribosylformylglycinamidine synthase protein PurL
25	 44.86	0	35941..37398	+	485	195977181	purF	Sez_0025	-	amidophosphoribosyltransferase precursor protein PurF
26	 45.26	0	37455..38477	+	340	195977182	purM	Sez_0026	-	phosphoribosylformylglycinamidine cyclo-ligase protein PurM
27	 42.47	0	38474..39031	+	185	195977183	purN	Sez_0027	-	phosphoribosylglycinamide formyltransferase protein PurN
28	 44.51	0	39223..40725	+	500	195977184	purH	Sez_0028	-	bifunctional purine biosynthesis protein PurH
29	 44.24	0	41103..42257	-	384	195977185	-	Sez_0029	-	autolysin
30	 46.44	+1	42571..43875	+	434	195977186	purD	Sez_0030	-	phosphoribosylamine--glycine ligase protein PurD
31	 49.28	+1	44103..44591	+	162	195977187	purE	Sez_0031	-	phosphoribosylaminoimidazole carboxylase catalytic subunit PurE
32	 46.89	+1	44578..45669	+	363	195977188	purK	Sez_0032	-	phosphoribosylaminoimidazole carboxylase ATPase subunit PurK
33	 39.56	0	45679..45903	+	74	195977189	-	Sez_0033	-	hypothetical protein
34	 35.30	-1	47940..48854	+	304	195977190	-	Sez_0036	-	transcriptional regulator
35	 43.71	0	49069..50070	+	333	195977191	ruvB	Sez_0037	-	Holliday junction DNA helicase RuvB
36	 38.62	0	50082..50270	-	62	195977192	-	Sez_0038	-	hypothetical protein
37	 41.83	0	50356..50814	+	152	195977193	acp1	Sez_0039	-	phosphotyrosine protein phosphatase
38	 38.81	0	50820..51221	+	133	195977194	-	Sez_0040	-	hypothetical protein membrane associated
39	 42.49	0	53419..56061	+	880	195977195	adh2	Sez_0043	-	acetaldehyde dehydrogenase
40	 25.60	-2	56329..56535	+	68	195977196	-	Sez_0044	-	hypothetical protein
41	 40.74	0	56556..57608	+	350	195977197	adh	Sez_0045	-	Zn-dependent alcohol dehydrogenases and related dehydrogenases
42	 44.44	0	57813..58829	+	338	195977198	adhA	Sez_0046	-	alcohol dehydrogenase I
43	 27.62	-2	59549..61141	+	530	195977199	-	Sez_0047	-	ABC-type multidrug/protein/lipid transport system, ATPase component
44	 29.86	-2	61312..62433	+	373	195977200	-	Sez_0048	-	HesA/MoeB/ThiF family protein
45	 29.68	-2	62426..63601	+	391	195977201	-	Sez_0049	-	zinc protease
46	 26.39	-2	63585..64448	-	287	195977202	-	Sez_0050	-	positive transcriptional regulator, MutR family
47	 36.67	-1	65062..65361	+	99	195977203	-	Sez_0051	-	hypothetical protein
48	 43.77	0	65600..67075	+	491	195977204	thnsl	Sez_0052	-	threonine synthase-like protein
49	 41.21	0	67115..67774	+	219	195977205	-	Sez_0053	-	multi antimicrobial extrusion (MATE) family transporter
50	 43.11	0	67671..68417	+	248	195977206	-	Sez_0054	-	multi antimicrobial extrusion (MATE) family transporter
51	 41.10	0	68797..69105	+	102	195977207	rpsJ	Sez_0055	-	30S ribosomal protein S10
52	 40.35	0	69403..70029	+	208	195977208	rplC	Sez_0056	-	50S ribosomal protein L3
53	 41.99	0	70054..70677	+	207	195977209	rplD	Sez_0057	-	50S ribosomal protein L4
54	 39.76	0	70725..70973	+	82	195977210	rplW	Sez_0058	-	50S ribosomal protein L23
55	 43.05	0	70991..71824	+	277	195977211	rplB	Sez_0059	-	50S ribosomal protein L2
56	 40.41	0	71876..72214	+	112	195977212	rpsS	Sez_0060	-	30S ribosomal protein S19
57	 39.71	0	72230..72574	+	114	195977213	rplV	Sez_0061	-	50S ribosomal protein L22
58	 42.66	0	72587..73240	+	217	195977214	rpsC	Sez_0062	-	30S ribosomal protein S3
59	 43.24	0	73244..73657	+	137	195977215	rplP	Sez_0063	-	50S ribosomal protein L16
60	 36.71	-1	73667..73873	+	68	195977216	rpmC	Sez_0064	-	50S ribosomal protein L29
61	 38.31	0	73901..74161	+	86	195977217	rpsQ	Sez_0065	-	30S ribosomal protein S17
62	 44.99	0	74186..74554	+	122	195977218	rplN	Sez_0066	-	50S ribosomal protein L14
63	 38.56	0	74638..74943	+	101	195977219	rplX	Sez_0067	-	50S ribosomal protein L24
64	 40.70	0	74967..75509	+	180	195977220	rplE	Sez_0068	-	50S ribosomal protein L5
65	 42.47	0	75525..75710	+	61	195977221	rpsN	Sez_0069	-	SSU ribosomal protein S14p (S29e)
66	 37.34	-1	76043..76441	+	132	195977222	rpsH	Sez_0070	-	30S ribosomal protein S8
67	 39.11	0	76763..77299	+	178	195977223	rplF	Sez_0071	-	50S ribosomal protein L6
68	 44.26	0	77393..77758	+	121	195977224	rplR	Sez_0072	-	50S ribosomal protein L18
69	 43.43	0	77777..78271	+	164	195977225	rpsE	Sez_0073	-	30S ribosomal protein S5
70	 38.25	0	78286..78468	+	60	195977226	rpmD	Sez_0074	-	50S ribosomal protein L30
71	 42.18	0	78670..79110	+	146	195977227	rplO	Sez_0075	-	50S ribosomal protein L15
72	 38.01	0	79127..80431	+	434	195977228	secY	Sez_0076	-	preprotein translocase subunit SecY
73	 39.31	0	80472..81224	+	250	195977229	adk	Sez_0077	-	adenylate kinase Adk
74	 39.19	0	81288..81560	+	90	195977230	infA	Sez_0078	-	translation initiation factor IF-1
75	 39.32	0	81586..81702	+	38	195977231	rpmJ	Sez_0079	-	50S ribosomal protein L36
76	 40.16	0	81720..82085	+	121	195977232	rpsM	Sez_0080	-	30S ribosomal protein S13
77	 45.05	0	82103..82486	+	127	195977233	rpsK	Sez_0081	-	30S ribosomal protein S11
78	 38.34	0	82533..83471	+	312	195977234	rpoA	Sez_0082	-	DNA-directed RNA polymerase alpha chain
79	 41.60	0	83486..83872	+	128	195977235	rplQ	Sez_0083	-	50S ribosomal protein L17
80	 42.77	0	85192..85986	+	264	195977236	-	Sez_0084	-	hypothetical protein
81	 41.31	0	85983..86759	+	258	195977237	-	Sez_0085	-	hypothetical protein
82	 38.70	0	86749..87438	+	229	195977238	-	Sez_0086	-	hypothetical protein
83	 30.72	-2	87471..87623	+	50	195977239	-	Sez_0087	-	hypothetical protein
84	 37.41	-1	87644..87937	+	97	195977240	-	Sez_0088	-	hypothetical protein
85	 33.07	-2	94623..95756	-	377	195977241	int	Sez_0089	-	integrase
86	 39.13	0	95746..95952	-	68	195977242	-	Sez_0090	-	hypothetical protein
87	 38.99	0	96013..96843	-	276	195977243	-	Sez_0091	-	transcriptional regulator Cro/CI family
88	 36.27	-1	97034..97441	-	135	195977244	-	Sez_0092	-	hypothetical protein
89	 35.67	-1	97730..99139	-	469	195977245	-	Sez_0093	-	FtsK/SpoIIIE family protein
90	 27.64	-2	99857..100225	-	122	195977246	-	Sez_0094	-	hypothetical protein
91	 38.86	0	100620..101180	-	186	195977247	-	Sez_0095	-	transposase IS1167
92	 39.74	0	101346..101813	-	155	195977248	-	Sez_0096	-	transposase IS1193D-like
93	 37.23	-1	102187..103392	-	401	195977249	-	Sez_0098	-	macrolide efflux protein, putative
94	 53.30	+2	103744..105030	+	428	195977250	sclZ.1	Sez_0099	-	collagen-like protein SclZ.1
95	 47.83	+1	105157..106308	+	383	195977251	sclZ.2	Sez_0100	-	collagen-like protein SclZ.2
96	 46.29	+1	106820..107344	+	174	195977252	-	Sez_0101	-	putative nudix hydrolase
97	 43.78	0	107558..108409	+	283	195977253	ispE	Sez_0102	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
98	 38.06	0	108479..108922	+	147	195977254	adcR	Sez_0103	-	transcriptional repressor AdcR for Zn(2+)-responsive expression
99	 45.11	0	108941..109645	+	234	195977255	znuC	Sez_0104	-	zinc ABC transporter, ATP-binding protein ZnuC
100	 41.13	0	109614..110447	+	277	195977256	znuB	Sez_0105	-	Zinc ABC transporter inner membrane permease protein ZnuB
41.87	MEAN

4.13	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.