IslandPath Analysis: Methanococcus maripaludis C7



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.95   STD DEV: 3.74
Methanococcus maripaludis C7, complete genome - 1..1772694
1788 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 28.20	-1	120..2243	+	707	150401931	-	MmarC7_0001	-	hypothetical protein
2	 26.75	-1	2225..4108	+	627	150401932	-	MmarC7_0002	-	UvrD/REP helicase
3	 25.58	-2	4131..5381	-	416	150401933	-	MmarC7_0003	-	hypothetical protein
4	 31.21	0	5395..7932	-	845	150401934	-	MmarC7_0004	-	hypothetical protein
5	 26.83	-1	8074..10704	+	876	150401935	-	MmarC7_0005	-	hypothetical protein
6	 28.86	-1	10706..13543	+	945	150401936	-	MmarC7_0006	-	UvrD/REP helicase
7	 30.38	0	13588..15549	+	653	150401937	-	MmarC7_0007	-	helicase c2
8	 31.99	0	15646..16239	-	197	150401938	-	MmarC7_0008	-	TPR repeat-containing protein
9	 32.94	0	16254..16508	-	84	150401939	-	MmarC7_0009	-	excinuclease ABC subunit C
10	 29.43	-1	16976..17794	+	272	150401940	-	MmarC7_0010	-	hypothetical protein
11	 31.23	0	17862..18431	+	189	150401941	-	MmarC7_0011	-	exonuclease RNase T and DNA polymerase III
12	 34.78	0	18477..20765	+	762	150401942	-	MmarC7_0012	-	DEAD/DEAH box helicase domain-containing protein
13	 28.80	-1	21094..21975	+	293	150401943	-	MmarC7_0013	-	hypothetical protein
14	 28.12	-1	22468..22908	+	146	150401944	-	MmarC7_0015	-	hypothetical protein
15	 31.41	0	22909..24207	-	432	150401945	-	MmarC7_0016	-	restriction modification system DNA specificity subunit
16	 36.69	0	24236..27334	-	1032	150401946	-	MmarC7_0017	-	HsdR family type I site-specific deoxyribonuclease
17	 37.25	0	29062..30567	-	501	150401947	-	MmarC7_0019	-	N-6 DNA methylase
18	 31.06	0	30661..31539	-	292	150401948	-	MmarC7_0020	-	hypothetical protein
19	 32.92	0	31658..32632	-	324	150401949	-	MmarC7_0021	-	phage integrase family protein
20	 34.48	0	32642..32902	-	86	150401950	-	MmarC7_0022	-	hypothetical protein
21	 26.42	-2	32904..33062	-	52	150401951	-	MmarC7_0023	-	hypothetical protein
22	 35.26	0	33073..33228	-	51	150401952	-	MmarC7_0024	-	hypothetical protein
23	 31.13	0	33563..33880	-	105	150401953	-	MmarC7_0025	-	hypothetical protein
24	 29.57	-1	34004..34348	-	114	150401954	-	MmarC7_0026	-	hypothetical protein
25	 38.55	+1	34358..36388	-	676	150401955	-	MmarC7_0027	-	MCM family protein
26	 37.31	0	36385..36912	-	175	150401956	-	MmarC7_0028	-	hypothetical protein
27	 31.46	0	36943..37209	-	88	150401957	-	MmarC7_0029	-	hypothetical protein
28	 33.33	0	37317..37514	-	65	150401958	-	MmarC7_0030	-	hypothetical protein
29	 30.90	0	37699..37986	+	95	150401959	-	MmarC7_0031	-	putative transcriptional regulator
30	 38.84	+1	38584..39546	-	320	150401960	-	MmarC7_0032	-	hypothetical protein
31	 28.97	-1	40066..41577	+	503	150401961	-	MmarC7_0033	-	hypothetical protein
32	 26.00	-2	41579..41878	+	99	150401962	-	MmarC7_0034	-	hypothetical protein
33	 27.51	-1	41919..42227	-	102	150401963	-	MmarC7_0035	-	hypothetical protein
34	 28.48	-1	42230..43198	-	322	150401964	-	MmarC7_0036	-	HNH endonuclease
35	 32.00	0	43302..44279	-	325	150401965	-	MmarC7_0037	-	DNA methylase N-4/N-6 domain-containing protein
36	 34.21	0	44388..44615	-	75	150401966	-	MmarC7_0038	-	hypothetical protein
37	 34.13	0	44784..45158	+	124	150401967	-	MmarC7_0039	-	hypothetical protein
38	 29.53	-1	45262..46338	-	358	150401968	-	MmarC7_0040	-	metallophosphoesterase
39	 32.43	0	46537..47091	-	184	150401969	-	MmarC7_0041	-	resolvase domain-containing protein
40	 25.13	-2	47255..48205	-	316	150401970	-	MmarC7_0042	-	hypothetical protein
41	 28.02	-1	48229..48924	-	231	150401971	-	MmarC7_0043	-	glycosyl transferase family protein
42	 29.49	-1	48924..50717	-	597	150401972	-	MmarC7_0044	-	hypothetical protein
43	 31.29	0	51003..52421	-	472	150401973	-	MmarC7_0045	-	hypothetical protein
44	 28.84	-1	52433..54322	-	629	150401974	-	MmarC7_0046	-	hypothetical protein
45	 31.20	0	55216..55683	-	155	150401975	-	MmarC7_0048	-	hypothetical protein
46	 32.28	0	55694..56449	-	251	150401976	-	MmarC7_0049	-	hypothetical protein
47	 32.74	0	56458..57810	-	450	150401977	-	MmarC7_0050	-	hypothetical protein
48	 31.30	0	57938..58477	-	179	150401978	-	MmarC7_0051	-	hypothetical protein
49	 32.20	0	58618..59058	-	146	150401979	-	MmarC7_0052	-	hypothetical protein
50	 40.42	+1	59064..59543	-	159	150401980	-	MmarC7_0053	-	hypothetical protein
51	 35.37	0	59553..60287	-	244	150401981	-	MmarC7_0054	-	hypothetical protein
52	 35.47	0	60649..60975	-	108	150401982	-	MmarC7_0055	-	hypothetical protein
53	 40.00	+1	61002..61451	-	149	150401983	-	MmarC7_0056	-	hypothetical protein
54	 36.58	0	61550..63580	-	676	150401984	-	MmarC7_0057	-	hypothetical protein
55	 35.50	0	63577..65466	-	629	150401985	-	MmarC7_0058	-	hypothetical protein
56	 30.06	-1	65468..65803	-	111	150401986	-	MmarC7_0059	-	hypothetical protein
57	 39.30	+1	66859..67881	-	340	150401987	-	MmarC7_0060	-	phage integrase family protein
58	 35.62	0	68251..71091	+	946	150401988	-	MmarC7_0061	-	UvrD/REP helicase
59	 32.48	0	71081..74140	+	1019	150401989	-	MmarC7_0062	-	DNA methylase N-4/N-6 domain-containing protein
60	 33.36	0	74142..77330	+	1062	150401990	-	MmarC7_0063	-	type III restriction protein res subunit
61	 35.56	0	77687..78181	-	164	150401991	-	MmarC7_0064	-	hypothetical protein
62	 37.12	0	78558..80591	-	677	150401992	-	MmarC7_0065	-	MCM family protein
63	 36.13	0	81652..82044	+	130	150401993	-	MmarC7_0066	-	hypothetical protein
64	 36.48	0	82615..83376	+	253	150401994	-	MmarC7_0067	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
65	 39.83	+1	83385..84461	-	358	150401995	-	MmarC7_0068	-	hypothetical protein
66	 41.08	+1	88418..88714	-	98	150401996	-	MmarC7_0069	-	hypothetical protein
67	 36.78	0	90284..90631	-	115	150401997	-	MmarC7_0070	-	hypothetical protein
68	 33.33	0	91807..92028	-	73	150401998	-	MmarC7_0071	-	seryl-tRNA synthetase related
69	 31.17	0	92434..92757	-	107	150401999	-	MmarC7_0072	-	hypothetical protein
70	 25.57	-2	92940..93287	-	115	150402000	-	MmarC7_0073	-	hypothetical protein
71	 27.97	-1	93372..93893	-	173	150402001	-	MmarC7_0074	-	hypothetical protein
72	 36.21	0	94127..94786	+	219	150402002	-	MmarC7_0075	-	cobalamin B12-binding domain-containing protein
73	 37.73	+1	94811..95902	+	363	150402003	-	MmarC7_0076	-	uroporphyrinogen decarboxylase
74	 36.64	0	96026..97054	+	342	150402004	-	MmarC7_0077	-	methylcobalamin:coenzyme M methyltransferase
75	 32.55	0	97054..98832	+	592	150402005	-	MmarC7_0078	-	ferredoxin
76	 29.63	-1	98890..99753	-	287	150402006	-	MmarC7_0079	-	uroporphyrinogen decarboxylase
77	 39.16	+1	99819..101123	-	434	150402007	-	MmarC7_0080	-	major facilitator transporter
78	 33.60	0	101346..102467	+	373	150402008	-	MmarC7_0081	-	2-hydroxyglutaryl-CoA dehydratase D-component
79	 30.20	-1	102506..103111	-	201	150402009	-	MmarC7_0082	-	ribonuclease H
80	 27.65	-1	103463..104131	+	222	150402010	-	MmarC7_0083	-	hypothetical protein
81	 30.97	0	104146..104610	-	154	150402011	-	MmarC7_0084	-	hypothetical protein
82	 31.80	0	104681..105268	-	195	150402012	-	MmarC7_0085	-	TetR family transcriptional regulator
83	 26.82	-1	106209..106607	+	132	150402013	-	MmarC7_0086	-	hypothetical protein
84	 25.88	-2	106712..106939	+	75	150402014	-	MmarC7_0087	-	hypothetical protein
85	 33.06	0	107041..107784	+	247	150402015	-	MmarC7_0088	-	hypothetical protein
86	 25.51	-2	107810..108154	-	114	150402016	-	MmarC7_0089	-	hypothetical protein
87	 31.85	0	108474..108743	+	89	150402017	-	MmarC7_0090	-	hypothetical protein
88	 31.50	0	108770..109369	-	199	150402018	-	MmarC7_0091	-	hypothetical protein
89	 33.54	0	109402..109875	-	157	150402019	-	MmarC7_0092	-	peptide methionine sulfoxide reductase
90	 31.89	0	110123..110746	+	207	150402020	-	MmarC7_0093	-	lysine exporter protein LysE/YggA
91	 31.18	0	110771..112024	+	417	150402021	-	MmarC7_0094	-	amino acid permease-associated region
92	 31.35	0	112031..113392	-	453	150402022	-	MmarC7_0095	-	hypothetical protein
93	 30.79	0	113437..114066	-	209	150402023	-	MmarC7_0096	-	hypothetical protein
94	 27.04	-1	114122..114598	-	158	150402024	-	MmarC7_0097	-	hypothetical protein
95	 39.37	+1	114930..115757	+	275	150402025	nifH	MmarC7_0098	-	nitrogenase reductase
96	 38.68	+1	115800..116117	+	105	150402026	-	MmarC7_0099	-	nitrogen regulatory protein P-II
97	 38.80	+1	116127..116492	+	121	150402027	-	MmarC7_0100	-	nitrogen regulatory protein P-II
98	 38.16	+1	116546..117976	+	476	150402028	-	MmarC7_0101	-	nitrogenase alpha chain
99	 38.08	+1	117969..119357	+	462	150402029	-	MmarC7_0102	-	nitrogenase
100	 38.12	+1	119381..120823	+	480	150402030	-	MmarC7_0103	-	nitrogenase MoFe cofactor biosynthesis protein NifE
33.95	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.