IslandPath Analysis: Nocardioides sp. JS614



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.76   STD DEV: 3.53
Nocardioides sp. JS614, complete genome - 1..4985871
4645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 68.75	0	72..1658	+	528	119714273	-	Noca_0001	-	chromosomal replication initiator protein DnaA
2	 71.39	0	2029..3255	+	408	119714274	-	Noca_0002	-	DNA polymerase III subunit beta
3	 69.54	0	3332..4237	+	301	119714275	-	Noca_0003	-	6-phosphogluconate dehydrogenase-like protein
4	 73.79	0	4254..5516	+	420	119714276	recF	Noca_0004	-	recombination protein F
5	 75.31	+1	5506..6072	+	188	119714277	-	Noca_0005	-	hypothetical protein
6	 68.68	0	6391..8526	+	711	119714278	gyrB	Noca_0006	-	DNA gyrase subunit B
7	 70.21	0	8578..11346	+	922	119714279	-	Noca_0007	-	DNA gyrase subunit A
8	 71.10	0	11346..11864	+	172	119714280	-	Noca_0008	-	hypothetical protein
9	 73.01	0	12546..13964	+	472	119714281	-	Noca_0009	-	plasmid pRiA4b ORF-3 family protein
10	 71.52	0	13975..14715	-	246	119714282	-	Noca_0010	-	fatty acid hydroxylase
11	 76.27	+1	14712..15461	-	249	119714283	-	Noca_0011	-	GntR family transcriptional regulator
12	 75.40	+1	15502..16314	+	270	119714284	-	Noca_0012	-	hypothetical protein
13	 68.39	0	16324..16671	+	115	119714285	-	Noca_0013	-	hypothetical protein
14	 74.68	0	16701..17573	+	290	119714286	-	Noca_0014	-	patatin
15	 72.35	0	17570..18589	+	339	119714287	-	Noca_0015	-	phospholipid/glycerol acyltransferase
16	 74.42	0	18611..19255	-	214	119714288	-	Noca_0016	-	hypothetical protein
17	 69.01	0	19412..19924	+	170	119714289	-	Noca_0017	-	peptidylprolyl isomerase
18	 71.44	0	19941..20861	+	306	119714290	-	Noca_0018	-	rhomboid family protein
19	 72.51	0	21062..22003	+	313	119714291	-	Noca_0019	-	hypothetical protein
20	 67.76	-1	22374..22832	-	152	119714292	-	Noca_0020	-	hypothetical protein
21	 71.78	0	22883..23704	+	273	119714293	-	Noca_0021	-	hypothetical protein
22	 72.52	0	23664..25457	-	597	119714294	-	Noca_0022	-	protein kinase
23	 76.76	+1	25454..26899	-	481	119714295	-	Noca_0023	-	protein kinase
24	 69.04	0	26896..28368	-	490	119714296	-	Noca_0024	-	peptidoglycan glycosyltransferase
25	 71.07	0	28365..29771	-	468	119714297	-	Noca_0025	-	cell cycle protein
26	 74.26	0	29771..31087	-	438	119714298	-	Noca_0026	-	protein phosphatase 2C domain-containing protein
27	 71.28	0	31092..31568	-	158	119714299	-	Noca_0027	-	forkhead-associated protein
28	 71.97	0	31571..32287	-	238	119714300	-	Noca_0028	-	forkhead-associated protein
29	 72.98	0	32794..33363	+	189	119714301	-	Noca_0029	-	GCN5-related N-acetyltransferase
30	 75.35	+1	33397..34605	-	402	119714302	-	Noca_0030	-	major facilitator transporter
31	 68.74	0	34746..35228	+	160	119714303	-	Noca_0031	-	dehydratase
32	 73.61	0	35225..36823	+	532	119714304	-	Noca_0032	-	fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
33	 72.77	0	36843..37760	+	305	119714305	-	Noca_0033	-	dihydrodipicolinate synthetase
34	 73.84	0	37757..38983	+	408	119714306	-	Noca_0034	-	hypothetical protein
35	 69.55	0	39113..39805	+	230	119714307	-	Noca_0035	-	GntR family transcriptional regulator
36	 73.22	0	39830..41461	-	543	119714308	-	Noca_0036	-	thiamine pyrophosphate binding domain-containing protein
37	 74.60	0	41511..43124	-	537	119714309	-	Noca_0037	-	aldehyde dehydrogenase
38	 72.94	0	43121..43837	-	238	119714310	-	Noca_0038	-	hypothetical protein
39	 71.33	0	43915..45135	+	406	119714311	-	Noca_0039	-	Formyl-CoA transferase
40	 68.28	0	45212..46573	+	453	119714312	-	Noca_0040	-	MmgE/PrpD family protein
41	 67.03	-1	46643..48025	+	460	119714313	-	Noca_0041	-	extracellular solute-binding protein
42	 64.46	-2	48055..49050	+	331	119714314	-	Noca_0042	-	binding-protein-dependent transport systems inner membrane component
43	 64.83	-1	49062..49934	+	290	119714315	-	Noca_0043	-	binding-protein-dependent transport systems inner membrane component
44	 70.87	0	49963..50724	+	253	119714316	-	Noca_0044	-	short chain enoyl-CoA hydratase
45	 74.59	0	50721..51641	+	306	119714317	-	Noca_0045	-	dehydratase
46	 69.76	0	51689..52852	-	387	119714318	-	Noca_0046	-	acyl-CoA dehydrogenase domain-containing protein
47	 72.24	0	52863..54101	-	412	119714319	-	Noca_0047	-	Formyl-CoA transferase
48	 72.65	0	54476..55060	-	194	119714320	-	Noca_0048	-	GntR family transcriptional regulator
49	 69.02	0	56595..58040	+	481	119714321	-	Noca_0050	-	Dyp-type peroxidase family protein
50	 68.33	0	58431..59273	+	280	119714322	-	Noca_0051	-	hypothetical protein
51	 66.85	-1	59586..60119	+	177	119714323	-	Noca_0052	-	hypothetical protein
52	 65.84	-1	60327..60929	-	200	119714324	-	Noca_0053	-	hypothetical protein
53	 65.74	-1	61631..62167	-	178	119714325	-	Noca_0054	-	hypothetical protein
54	 69.66	0	62400..62666	+	88	119714326	-	Noca_0055	-	hypothetical protein
55	 68.35	0	62748..63995	-	415	119714327	-	Noca_0056	-	glycosyl hydrolase family 32 protein
56	 66.11	-1	63995..65443	-	482	119714328	-	Noca_0057	-	hypothetical protein
57	 68.73	0	65532..66548	+	338	119714329	-	Noca_0058	-	LacI family transcription regulator
58	 63.94	-2	66676..67995	+	439	119714330	-	Noca_0059	-	extracellular solute-binding protein
59	 63.45	-2	68116..68985	+	289	119714331	-	Noca_0060	-	binding-protein-dependent transport systems inner membrane component
60	 62.98	-2	69064..69957	+	297	119714332	-	Noca_0061	-	binding-protein-dependent transport systems inner membrane component
61	 70.36	0	70016..70936	+	306	119714333	-	Noca_0062	-	ribokinase-like domain-containing protein
62	 67.58	-1	71344..71673	+	109	119714334	-	Noca_0063	-	transposase IS3/IS911 family protein
63	 68.47	0	72341..73780	+	479	119714335	-	Noca_0065	-	integrase catalytic subunit
64	 58.86	-2	76344..77522	-	392	119714336	-	Noca_0068	-	inulin fructotransferase (DFA-I-forming)
65	 62.20	-2	79306..79551	-	81	119714337	-	Noca_0069	-	hypothetical protein
66	 70.51	0	79607..80230	-	207	119714338	-	Noca_0070	-	lysine exporter protein LysE/YggA
67	 62.39	-2	80377..80844	+	155	119714339	-	Noca_0071	-	AsnC family transcriptional regulator
68	 72.53	0	81382..82302	-	306	119714340	-	Noca_0072	-	ornithine cyclodeaminase
69	 67.14	-1	82532..83164	+	210	119714341	-	Noca_0073	-	helix-turn-helix domain-containing protein
70	 67.90	-1	83161..83565	+	134	119714342	-	Noca_0074	-	hypothetical protein
71	 67.66	-1	83670..84680	+	336	119714343	-	Noca_0075	-	ABC-type sugar transport system periplasmic component-like
72	 69.09	0	84705..86228	+	507	119714344	-	Noca_0076	-	ABC transporter related
73	 68.27	0	86221..87216	+	331	119714345	-	Noca_0077	-	inner-membrane translocator
74	 72.18	0	87213..88028	+	271	119714346	-	Noca_0078	-	short-chain dehydrogenase/reductase SDR
75	 68.75	0	88141..90204	+	687	119714347	-	Noca_0079	-	5-oxoprolinase (ATP-hydrolyzing)
76	 67.31	-1	90197..91915	+	572	119714348	-	Noca_0080	-	5-oxoprolinase (ATP-hydrolyzing)
77	 72.97	0	91912..92895	+	327	119714349	-	Noca_0081	-	peptidase M19, renal dipeptidase
78	 73.35	0	92896..94077	+	393	119714350	-	Noca_0082	-	FAD dependent oxidoreductase
79	 71.68	0	94074..94412	+	112	119714351	-	Noca_0083	-	hypothetical protein
80	 74.57	0	94405..95871	+	488	119714352	-	Noca_0084	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
81	 69.77	0	95879..96811	+	310	119714353	-	Noca_0085	-	dihydrodipicolinate synthetase
82	 72.55	0	96812..98341	+	509	119714354	-	Noca_0086	-	aldehyde dehydrogenase
83	 74.91	0	98382..99533	-	383	119714355	-	Noca_0087	-	CdaR family transcriptional regulator
84	 73.46	0	99617..100543	+	308	119714356	-	Noca_0088	-	L-proline dehydrogenase
85	 69.12	0	100572..102200	+	542	119714357	-	Noca_0089	-	delta-1-pyrroline-5-carboxylate dehydrogenase
86	 73.37	0	102208..102804	-	198	119714358	-	Noca_0090	-	beta-lactamase domain-containing protein
87	 76.80	+1	103558..104406	+	282	119714359	-	Noca_0092	-	urea amidolyase related protein
88	 74.29	0	104442..105254	+	270	119714360	-	Noca_0093	-	hypothetical protein
89	 72.22	0	105424..106143	+	239	119714361	-	Noca_0094	-	Asp/Glu racemase
90	 72.20	0	106207..107760	+	517	119714362	-	Noca_0095	-	hydantoinase/oxoprolinase
91	 71.75	0	107763..108863	+	366	119714363	-	Noca_0096	-	hypothetical protein
92	 77.27	+1	108849..110423	-	524	119714364	-	Noca_0097	-	regulator of polyketide synthase expression-like
93	 76.97	+1	110420..111496	-	358	119714365	-	Noca_0098	-	hypothetical protein
94	 69.24	0	111687..112889	+	400	119714366	-	Noca_0099	-	ABC-type sugar transport system periplasmic component-like
95	 73.17	0	112886..114469	+	527	119714367	-	Noca_0100	-	ABC transporter related
96	 70.85	0	114503..115531	+	342	119714368	-	Noca_0101	-	inner-membrane translocator
97	 74.16	0	115531..116544	+	337	119714369	-	Noca_0102	-	thermostable dipeptidase
98	 68.30	0	116718..117023	+	101	119714370	-	Noca_0103	-	hypothetical protein
99	 67.23	-1	117020..117724	+	234	119714371	-	Noca_0104	-	hypothetical protein
100	 72.22	0	118138..118839	-	233	119714372	-	Noca_0105	-	putative lipoate-protein ligase A
71.76	MEAN

3.53	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.