IslandPath Analysis: Escherichia coli ATCC 8739



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.29   STD DEV: 4.70
Escherichia coli ATCC 8739, complete genome - 1..4746218
4200 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 53.85	0	48..1451	+	467	170018062	-	EcolC_0001	-	chromosomal replication initiator protein DnaA
2	 54.31	0	1456..2556	+	366	170018063	-	EcolC_0002	-	DNA polymerase III, beta subunit
3	 54.93	0	2556..3629	+	357	170018064	-	EcolC_0003	-	DNA replication and repair protein RecF
4	 55.20	0	3658..6072	+	804	170018065	-	EcolC_0004	-	DNA gyrase, B subunit
5	 50.63	0	6312..6710	+	132	170018066	-	EcolC_0005	-	hypothetical protein
6	 50.80	0	6825..7637	+	270	170018067	-	EcolC_0006	-	Cof-like hydrolase
7	 42.92	-1	7683..8339	-	218	170018068	-	EcolC_0007	-	putative replicase
8	 55.36	0	8617..9306	+	229	170018069	-	EcolC_0008	-	GntR domain-containing protein
9	 54.15	0	9303..10181	+	292	170018070	-	EcolC_0009	-	2-dehydro-3-deoxygalactonokinase
10	 59.39	+1	10165..10782	+	205	170018071	-	EcolC_0010	-	KDPG and KHG aldolase
11	 53.00	0	10779..11927	+	382	170018072	-	EcolC_0011	-	mandelate racemase/muconate lactonizing protein
12	 53.67	0	12047..13339	+	430	170018073	-	EcolC_0012	-	d-galactonate transporter
13	 50.89	0	13336..14400	-	354	170018074	-	EcolC_0013	-	hypothetical protein
14	 55.14	0	14501..15715	+	404	170018075	-	EcolC_0014	-	hypothetical protein
15	 50.74	0	15717..16124	-	135	170018076	-	EcolC_0015	-	hypothetical protein
16	 47.10	0	16355..16768	+	137	170018077	-	EcolC_0016	-	heat shock protein Hsp20
17	 48.95	0	16880..17308	+	142	170018078	-	EcolC_0017	-	heat shock protein Hsp20
18	 52.89	0	17504..19165	+	553	170018079	-	EcolC_0018	-	YidE/YbjL duplication
19	 51.32	0	19162..19878	-	238	170018080	-	EcolC_0019	-	GntR family transcriptional regulator
20	 52.01	0	20174..21790	+	538	170018081	-	EcolC_0020	-	PTS system, alpha-glucoside-specific IIBC subunit
21	 52.99	0	21790..23112	+	440	170018082	-	EcolC_0021	-	glycoside hydrolase family protein
22	 51.36	0	23681..24889	+	402	170018083	-	EcolC_0023	-	IS605 family transposase OrfB
23	 52.01	0	25060..25407	+	115	170018084	-	EcolC_0024	-	isocitrate dehydrogenase (NADP(+))
24	 50.41	0	25397..25759	+	120	170018085	-	EcolC_0025	-	hypothetical protein
25	 53.82	0	25756..26253	+	165	170018086	-	EcolC_0026	-	putative transcriptional regulator
26	 57.05	+1	26261..27445	-	394	170018087	-	EcolC_0027	-	major facilitator superfamily multidrug/H(+) antiporter
27	 56.25	+1	28583..30271	+	562	170018088	-	EcolC_0028	-	acetolactate synthase, large subunit, biosynthetic type
28	 48.45	0	30275..30565	+	96	170018089	-	EcolC_0029	-	acetolactate synthase, small subunit
29	 58.88	+1	30640..31230	+	196	170018090	-	EcolC_0030	-	two component LuxR family transcriptional regulator
30	 57.22	+1	31230..32732	+	500	170018091	-	EcolC_0031	-	integral membrane sensor signal transduction histidine kinase
31	 54.92	0	32742..34061	+	439	170018092	-	EcolC_0032	-	phosphoglycerate transporter
32	 52.59	0	34199..35590	+	463	170018093	-	EcolC_0033	-	phosphoglycerate transporter
33	 54.78	0	35635..37401	-	588	170018094	-	EcolC_0034	-	adenine deaminase
34	 48.31	0	37576..38910	+	444	170018095	-	EcolC_0035	-	xanthine/uracil/vitamin C permease
35	 52.76	0	38963..39415	+	150	170018096	-	EcolC_0036	-	hypothetical protein
36	 52.21	0	39461..40816	+	451	170018097	-	EcolC_0037	-	major facilitator transporter
37	 42.86	-1	40857..41150	-	97	170018098	-	EcolC_0038	-	putative transport protein
38	 47.37	0	41372..42190	+	272	170018099	-	EcolC_0039	-	YaeC family lipoprotein
39	 48.81	0	42194..43117	-	307	170018100	-	EcolC_0040	-	carboxylate/amino acid/amine transporter
40	 46.33	-1	43228..44412	-	394	170018101	-	EcolC_0041	-	sugar efflux transporter
41	 61.18	+2	45542..47875	-	777	170018102	-	EcolC_0043	-	P4 family phage/plasmid primase
42	 60.12	+1	47890..48210	-	106	170018103	-	EcolC_0044	-	putative protein encoded in prophage
43	 57.02	+1	48346..48801	-	151	170018104	-	EcolC_0045	-	hypothetical protein
44	 51.04	0	48794..49081	-	95	170018105	-	EcolC_0046	-	hypothetical protein
45	 56.18	+1	49074..49664	-	196	170018106	-	EcolC_0047	-	putative bacteriophage protein
46	 58.80	+1	49661..49927	-	88	170018107	-	EcolC_0048	-	phage transcriptional regulator, AlpA
47	 57.69	+1	50480..51214	+	244	170018108	-	EcolC_0049	-	hypothetical protein
48	 48.56	0	51214..51456	+	80	170018109	-	EcolC_0050	-	transcriptional activator Ogr/delta
49	 53.01	0	51480..52043	+	187	170018110	-	EcolC_0051	-	polarity suppression protein
50	 31.41	-2	52323..54089	-	588	170018111	-	EcolC_0052	-	hypothetical protein
51	 41.50	-2	54119..55294	-	391	170018112	-	EcolC_0053	-	integrase family protein
52	 49.39	0	55844..57226	+	460	170018113	-	EcolC_0054	-	sugar (glycoside-Pentoside-hexuronide) transporter
53	 52.09	0	57236..59554	+	772	170018114	-	EcolC_0055	-	glycoside hydrolase family protein
54	 54.21	0	59607..61316	-	569	170018115	-	EcolC_0056	-	AsmA family protein
55	 54.96	0	61437..62828	-	463	170018116	-	EcolC_0057	-	uracil-xanthine permease
56	 53.65	0	63108..64313	+	401	170018117	-	EcolC_0058	-	sodium/glutamate symporter
57	 56.77	+1	64482..66563	-	693	170018118	-	EcolC_0059	-	ATP-dependent DNA helicase RecG
58	 55.36	0	66569..67258	-	229	170018119	-	EcolC_0060	-	tRNA guanosine-2'-O-methyltransferase
59	 53.86	0	67265..69373	-	702	170018120	-	EcolC_0061	-	(p)ppGpp synthetase I, SpoT/RelA
60	 53.26	0	69392..69667	-	91	170018121	-	EcolC_0062	-	DNA-directed RNA polymerase, omega subunit
61	 49.04	0	69722..70345	-	207	170018122	-	EcolC_0063	-	guanylate kinase
62	 52.70	0	70603..72285	+	560	170018123	-	EcolC_0064	-	DNA ligase (NAD(+))
63	 53.40	0	72282..72899	-	205	170018124	-	EcolC_0065	-	hypothetical protein
64	 47.64	0	73190..74014	-	274	170018125	-	EcolC_0066	-	DNA-damage-inducible protein
65	 53.70	0	74235..75098	-	287	170018126	-	EcolC_0067	-	YicC domain-containing protein
66	 56.62	+1	75225..75941	+	238	170018127	-	EcolC_0068	-	ribonuclease PH
67	 52.34	0	76007..76648	+	213	170018128	-	EcolC_0069	-	orotate phosphoribosyltransferase
68	 53.10	0	76685..77281	-	198	170018129	-	EcolC_0070	-	TetR family transcriptional regulator
69	 54.47	0	77388..77846	-	152	170018130	-	EcolC_0071	-	deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
70	 53.32	0	77824..79044	-	406	170018131	-	EcolC_0072	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
71	 47.91	0	79240..79884	+	214	170018132	-	EcolC_0073	-	DNA repair protein RadC
72	 53.16	0	80101..80337	+	78	170018133	-	EcolC_0074	-	ribosomal protein L28
73	 39.88	-2	80358..80525	+	55	170018134	-	EcolC_0075	-	ribosomal protein L33
74	 54.20	0	80623..81432	+	269	170018135	-	EcolC_0076	-	formamidopyrimidine-DNA glycosylase
75	 53.12	0	81471..81950	-	159	170018136	-	EcolC_0077	-	pantetheine-phosphate adenylyltransferase
76	 54.30	0	81958..83235	-	425	170018137	-	EcolC_0078	-	3-deoxy-D-manno-octulosonic-acid transferase domain-containing protein
77	 47.21	0	83684..84706	+	340	170018138	-	EcolC_0079	-	lipopolysaccharide heptosyltransferase III
78	 48.36	0	84703..85827	+	374	170018139	-	EcolC_0080	-	glycosyl transferase group 1
79	 47.49	0	85820..86617	+	265	170018140	-	EcolC_0081	-	lipopolysaccharide kinase
80	 38.45	-2	86633..87649	+	338	170018141	-	EcolC_0082	-	lipopolysaccharide 3-alpha-galactosyltransferase
81	 35.64	-2	87666..88661	+	331	170018142	-	EcolC_0083	-	lipopolysaccharide glucosyltransferase I
82	 34.92	-2	88671..89363	+	230	170018143	-	EcolC_0084	-	lipopolysaccharide core biosynthesis protein
83	 36.94	-2	89389..90414	+	341	170018144	-	EcolC_0085	-	lipopolysaccharide glucosyltransferase I
84	 32.42	-2	90499..91482	+	327	170018145	-	EcolC_0086	-	glycosyl transferase family protein
85	 33.17	-2	91528..92781	+	417	170018146	-	EcolC_0087	-	O-antigen polymerase
86	 51.54	0	92851..93822	-	323	170018147	-	EcolC_0088	-	lipopolysaccharide heptosyltransferase I
87	 53.96	0	93826..94872	-	348	170018148	-	EcolC_0089	-	lipopolysaccharide heptosyltransferase II
88	 51.13	0	94882..95814	-	310	170018149	-	EcolC_0090	-	ADP-L-glycero-D-manno-heptose-6-epimerase
89	 54.64	0	96028..97224	+	398	170018150	-	EcolC_0091	-	2-amino-3-ketobutyrate coenzyme A ligase
90	 52.53	0	97234..98259	+	341	170018151	-	EcolC_0092	-	L-threonine 3-dehydrogenase
91	 46.09	-1	98498..99532	+	344	170018152	-	EcolC_0093	-	glycosyl transferase family protein
92	 52.60	0	99519..100478	-	319	170018153	-	EcolC_0094	-	protein of unknown function DUF610 YibQ
93	 56.67	+1	100482..101741	-	419	170018154	-	EcolC_0095	-	peptidase M23B
94	 53.20	0	101775..103319	-	514	170018155	-	EcolC_0096	-	phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent
95	 49.77	0	103564..103995	+	143	170018156	-	EcolC_0097	-	rhodanese domain-containing protein
96	 51.19	0	104137..104388	+	83	170018157	-	EcolC_0098	-	glutaredoxin 3
97	 51.28	0	104451..104918	+	155	170018158	-	EcolC_0099	-	protein-export protein SecB
98	 56.57	+1	104918..105937	+	339	170018159	-	EcolC_0100	-	glycerol-3-phosphate dehydrogenase (NAD(P)(+))
99	 53.16	0	106017..106838	+	273	170018160	-	EcolC_0101	-	serine O-acetyltransferase
100	 55.06	0	106891..107364	-	157	170018161	-	EcolC_0102	-	RNA methyltransferase
51.29	MEAN

4.70	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.