IslandPathversion 1.0

IslandPath Analysis: Escherichia coli ATCC 8739



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.29 STD DEV: 4.70
Escherichia coli ATCC 8739, complete genome - 1..4746218
4200 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 53.85	0	48..1451	+	467	170018062	-	EcolC_0001	-	chromosomal replication initiator protein DnaA
2	 54.31	0	1456..2556	+	366	170018063	-	EcolC_0002	-	DNA polymerase III, beta subunit
3	 54.93	0	2556..3629	+	357	170018064	-	EcolC_0003	-	DNA replication and repair protein RecF
4	 55.20	0	3658..6072	+	804	170018065	-	EcolC_0004	-	DNA gyrase, B subunit
5	 50.63	0	6312..6710	+	132	170018066	-	EcolC_0005	-	hypothetical protein
6	 50.80	0	6825..7637	+	270	170018067	-	EcolC_0006	-	Cof-like hydrolase
7	 42.92	-1	7683..8339	-	218	170018068	-	EcolC_0007	-	putative replicase
8	 55.36	0	8617..9306	+	229	170018069	-	EcolC_0008	-	GntR domain-containing protein
9	 54.15	0	9303..10181	+	292	170018070	-	EcolC_0009	-	2-dehydro-3-deoxygalactonokinase
10	 59.39	+1	10165..10782	+	205	170018071	-	EcolC_0010	-	KDPG and KHG aldolase
11	 53.00	0	10779..11927	+	382	170018072	-	EcolC_0011	-	mandelate racemase/muconate lactonizing protein
12	 53.67	0	12047..13339	+	430	170018073	-	EcolC_0012	-	d-galactonate transporter
13	 50.89	0	13336..14400	-	354	170018074	-	EcolC_0013	-	hypothetical protein
14	 55.14	0	14501..15715	+	404	170018075	-	EcolC_0014	-	hypothetical protein
15	 50.74	0	15717..16124	-	135	170018076	-	EcolC_0015	-	hypothetical protein
16	 47.10	0	16355..16768	+	137	170018077	-	EcolC_0016	-	heat shock protein Hsp20
17	 48.95	0	16880..17308	+	142	170018078	-	EcolC_0017	-	heat shock protein Hsp20
18	 52.89	0	17504..19165	+	553	170018079	-	EcolC_0018	-	YidE/YbjL duplication
19	 51.32	0	19162..19878	-	238	170018080	-	EcolC_0019	-	GntR family transcriptional regulator
20	 52.01	0	20174..21790	+	538	170018081	-	EcolC_0020	-	PTS system, alpha-glucoside-specific IIBC subunit
21	 52.99	0	21790..23112	+	440	170018082	-	EcolC_0021	-	glycoside hydrolase family protein
22	 51.36	0	23681..24889	+	402	170018083	-	EcolC_0023	-	IS605 family transposase OrfB
23	 52.01	0	25060..25407	+	115	170018084	-	EcolC_0024	-	isocitrate dehydrogenase (NADP(+))
24	 50.41	0	25397..25759	+	120	170018085	-	EcolC_0025	-	hypothetical protein
25	 53.82	0	25756..26253	+	165	170018086	-	EcolC_0026	-	putative transcriptional regulator
26	 57.05	+1	26261..27445	-	394	170018087	-	EcolC_0027	-	major facilitator superfamily multidrug/H(+) antiporter
27	 56.25	+1	28583..30271	+	562	170018088	-	EcolC_0028	-	acetolactate synthase, large subunit, biosynthetic type
28	 48.45	0	30275..30565	+	96	170018089	-	EcolC_0029	-	acetolactate synthase, small subunit
29	 58.88	+1	30640..31230	+	196	170018090	-	EcolC_0030	-	two component LuxR family transcriptional regulator
30	 57.22	+1	31230..32732	+	500	170018091	-	EcolC_0031	-	integral membrane sensor signal transduction histidine kinase
31	 54.92	0	32742..34061	+	439	170018092	-	EcolC_0032	-	phosphoglycerate transporter
32	 52.59	0	34199..35590	+	463	170018093	-	EcolC_0033	-	phosphoglycerate transporter
33	 54.78	0	35635..37401	-	588