IslandPath Analysis: Xanthomonas campestris pv. campestris str. B100



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.83   STD DEV: 4.61
Xanthomonas campestris pv. campestris, complete genome - 1..5079002
4467 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.91	0	1..1329	+	442	188989397	dnaA	xccb100_0001	-	chromosomal replication initiator protein
2	 64.49	0	1605..2705	+	366	188989398	dnaN	xccb100_0002	-	DNA polymerase III beta chain
3	 65.58	0	3543..4736	+	397	188989399	-	xccb100_0003	-	DNA replication and repair protein
4	 64.99	0	4831..7275	+	814	188989400	gyrB	xccb100_0004	-	DNA gyrase subunit B
5	 67.86	0	7343..8179	+	278	188989401	-	xccb100_0005	-	putative membrane protease
6	 66.17	0	8242..9048	+	268	188989402	-	xccb100_0006	-	putative exported peptidase/protease
7	 63.16	0	9187..10383	+	398	188989403	-	xccb100_0007	-	hypothetical protein
8	 63.84	0	10537..11208	+	223	188989404	tonB1	xccb100_0008	-	macromolecule import protein
9	 64.17	0	11294..12055	+	253	188989405	exbB1	xccb100_0009	-	macromolecule import protein
10	 60.28	0	12102..12524	+	140	188989406	exbD1	xccb100_0010	-	macromolecule import protein
11	 61.31	0	12528..12938	+	136	188989407	exbD2	xccb100_0011	-	macromolecule import protein
12	 53.09	-2	13553..13876	+	107	188989408	-	xccb100_0012	-	hypothetical protein
13	 62.04	0	14129..14539	+	136	188989409	exbD3	xccb100_0013	-	macromolecule import protein
14	 67.32	0	14617..15387	-	256	188989410	pdxJ	xccb100_0014	-	pyridoxal phosphate biosynthetic protein
15	 67.78	0	15395..15664	-	89	188989411	-	xccb100_0015	-	hypothetical protein
16	 66.74	0	15739..17199	-	486	188989412	cls1	xccb100_0016	-	cardiolipin synthase family enzyme
17	 68.86	0	17484..18578	+	364	188989413	-	xccb100_0017	-	hypothetical protein
18	 65.41	0	18673..19386	-	237	188989414	-	xccb100_0018	-	hypothetical protein
19	 66.08	0	20015..21367	-	450	188989415	fadL	xccb100_0019	-	outer membrane fatty acid porin
20	 67.82	0	21587..22279	+	230	188989416	-	xccb100_0020	-	rhomboid family membrane protein
21	 61.37	0	22308..22628	+	106	188989417	-	xccb100_0021	-	hypothetical protein
22	 69.60	+1	22628..23614	+	328	188989418	serA2	xccb100_0022	-	phosphoglycerate dehydrogenase
23	 61.75	0	23854..24036	+	60	188989419	-	xccb100_0023	-	hypothetical protein
24	 68.62	0	24570..26057	-	495	188989420	ctp	xccb100_0024	-	periplasmic carboxyl-terminal protease
25	 68.70	0	26458..27687	-	409	188989421	-	xccb100_0025	-	hypothetical protein
26	 65.14	0	27846..28502	+	218	188989422	-	xccb100_0026	-	hypothetical protein
27	 68.68	0	28560..30344	+	594	188989423	-	xccb100_0027	-	putative exported peptidase
28	 61.57	0	30723..31154	-	143	188989424	-	xccb100_0028	-	putative exported peptidase
29	 60.00	-1	31588..32637	-	349	188989425	egl1	xccb100_0029	-	exported cellulase
30	 61.06	0	33046..34098	-	350	188989426	egl2	xccb100_0030	-	exported cellulase
31	 63.38	0	34729..35793	-	354	188989427	egl3	xccb100_0031	-	exported cellulase
32	 64.21	0	36107..37165	+	352	188989428	mtdH	xccb100_0032	-	mannitol dehydrogenase
33	 44.62	-2	37409..37780	-	123	188989429	-	xccb100_0033	-	hypothetical peptidase-like protein
34	 42.37	-2	37933..38109	-	58	188989430	-	xccb100_0034	-	hypothetical protein
35	 50.49	-2	38146..38652	-	168	188989431	-	xccb100_0035	-	hypothetical protein
36	 68.22	0	38697..40178	-	493	188989432	gltD	xccb100_0036	-	glutamate synthase (NADPH), beta subunit
37	 67.18	0	40300..44772	-	1490	188989433	gltB	xccb100_0037	-	glutamate synthase (NADPH), alpha subunit
38	 66.40	0	44975..45355	-	126	188989434	-	xccb100_0038	-	hypothetical protein
39	 66.74	0	45436..46767	+	443	188989435	-	xccb100_0039	-	putative DNA topoisomerase
40	 63.04	0	46883..47461	-	192	188989436	-	xccb100_0040	-	methyltransferase
41	 70.72	+1	48386..48730	-	114	188989437	-	xccb100_0041	-	hypothetical protein
42	 71.49	+1	49270..50160	+	296	188989438	-	xccb100_0042	-	pirin-like protein
43	 67.08	0	50379..51098	+	239	188989439	-	xccb100_0043	-	putative acyl carrier protein phosphodiesterase
44	 67.77	0	51443..52345	-	300	188989440	-	xccb100_0044	-	transcriptional regulator, LysR family
45	 68.30	0	52636..52941	-	101	188989441	-	xccb100_0045	-	hypothetical protein
46	 67.26	0	52938..53615	-	225	188989442	-	xccb100_0046	-	chaperone-like protein
47	 68.35	0	53750..54640	+	296	188989443	-	xccb100_0047	-	transcriptional regulator, LysR family
48	 64.21	0	54678..55247	-	189	188989444	-	xccb100_0048	-	putative transcriptional regulator, TetR family
49	 67.18	0	55508..55894	+	128	188989445	-	xccb100_0049	-	transcriptional regulator, penicillinase repressor family
50	 69.54	+1	55898..57601	+	567	188989446	-	xccb100_0050	-	membrane anchored putative peptidase
51	 68.31	0	58128..58979	+	283	188989447	-	xccb100_0051	-	hypothetical protein
52	 67.92	0	59221..59697	+	158	188989448	-	xccb100_0052	-	hypothetical protein
53	 67.43	0	59691..60347	+	218	188989449	-	xccb100_0053	-	hypothetical protein
54	 67.30	0	60766..61554	-	262	188989450	-	xccb100_0054	-	exported protein phosphoesterase
55	 68.67	0	61565..64258	-	897	188989451	-	xccb100_0055	-	exported TonB-dependent receptor
56	 70.38	+1	64334..65491	+	385	188989452	xylR	xccb100_0056	-	xylose repressor-like protein
57	 67.78	0	65630..67786	+	718	188989453	avrBs2	xccb100_0057	-	avirulence protein
58	 70.76	+1	67971..69461	-	496	188989454	-	xccb100_0058	-	hypothetical protein
59	 66.67	0	69458..71977	-	839	188989455	-	xccb100_0059	-	putative ATP-dependent helicase
60	 58.80	-1	72924..73190	+	88	188989456	-	xccb100_0060	-	IS1477 transposase ORFA
61	 62.83	0	73223..74056	+	277	188989457	-	xccb100_0061	-	IS1477 transposase ORFB
62	 68.23	0	74796..75497	+	233	188989458	-	xccb100_0062	-	Hemolysin-III family membrane protein
63	 62.50	0	75564..75875	-	103	188989459	-	xccb100_0063	-	hypothetical protein
64	 62.80	0	76049..76255	-	68	188989460	-	xccb100_0064	-	hypothetical protein
65	 63.89	0	76581..77048	-	155	188989461	-	xccb100_0065	-	hypothetical protein
66	 61.11	0	77017..77268	-	83	188989462	-	xccb100_0066	-	hypothetical protein
67	 41.30	-2	78492..79508	+	338	188989463	-	xccb100_0067	-	hypothetical protein
68	 39.58	-2	79508..80131	+	207	188989464	-	xccb100_0068	-	hypothetical protein
69	 62.30	0	80213..81427	-	404	188989465	-	xccb100_0069	-	IS1481 transposase
70	 52.87	-2	81495..81668	-	57	188989466	-	xccb100_0070	-	hypothetical protein
71	 65.08	0	81681..82058	-	125	188989467	-	xccb100_0071	-	hypothetical protein
72	 58.71	-1	82236..83642	-	468	188989468	-	xccb100_0072	-	hypothetical protein
73	 58.54	-1	83681..84295	-	204	188989469	-	xccb100_0073	-	hypothetical protein
74	 65.32	0	84458..84679	-	73	188989470	-	xccb100_0074	-	hypothetical protein
75	 64.58	0	85079..85318	-	79	188989471	-	xccb100_0075	-	hypothetical protein
76	 63.64	0	85324..85422	-	32	188989472	-	xccb100_0076	-	hypothetical protein
77	 66.80	0	85470..86231	+	253	188989473	-	xccb100_0077	-	putative deaminase
78	 61.23	0	86629..86904	-	91	188989474	-	xccb100_0078	-	hypothetical protein
79	 65.15	0	86952..87149	-	65	188989475	-	xccb100_0079	-	transcriptional regulator, LuxR family
80	 63.21	0	87660..88613	+	317	188989476	-	xccb100_0080	-	hypothetical protein
81	 73.14	+1	88757..89884	-	375	188989477	-	xccb100_0081	-	hypothetical protein
82	 66.89	0	90042..90482	+	146	188989478	-	xccb100_0082	-	hypothetical protein
83	 68.59	0	91366..91677	-	103	188989479	-	xccb100_0083	-	hypothetical protein
84	 69.01	0	91674..92738	-	354	188989480	-	xccb100_0084	-	Zinc metalloprotease
85	 70.02	+1	92850..93506	-	218	188989481	-	xccb100_0085	-	hypothetical protein
86	 67.82	0	93739..94173	+	144	188989482	-	xccb100_0086	-	hypothetical protein
87	 67.44	0	94662..95702	+	346	188989483	-	xccb100_0087	-	hypothetical protein
88	 68.07	0	95894..97036	+	380	188989484	aes	xccb100_0088	-	exported acetyl esterase
89	 63.91	0	97143..97541	+	132	188989485	-	xccb100_0089	-	hypothetical protein
90	 66.07	0	97557..97889	+	110	188989486	-	xccb100_0090	-	putative thioredoxin
91	 65.39	0	98708..100198	+	496	188989487	proP1	xccb100_0091	-	osmo-regulated MFS family proline/glycine-betaine
92	 67.97	0	100214..100672	-	152	188989488	-	xccb100_0092	-	hypothetical protein
93	 69.90	+1	100772..101638	+	288	188989489	-	xccb100_0093	-	hypothetical protein
94	 66.32	0	101613..102473	+	286	188989490	-	xccb100_0094	-	hypothetical protein
95	 74.90	+2	102552..104324	-	590	188989491	-	xccb100_0095	-	membrane-anchored conserved hypothetical protein
96	 74.26	+2	104473..106737	-	754	188989492	-	xccb100_0096	-	membrane-anchored conserved hypothetical protein
97	 75.04	+2	106734..107915	-	393	188989493	-	xccb100_0097	-	membrane-anchored conserved hypothetical protein
98	 73.24	+1	108073..108969	-	298	188989494	-	xccb100_0098	-	hypothetical protein
99	 67.63	0	108983..110125	-	380	188989495	-	xccb100_0099	-	MoxR-like ATPase
100	 60.65	0	110285..111082	-	265	188989496	-	xccb100_0100	-	hypothetical protein
64.83	MEAN

4.61	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.