IslandPath Analysis: Acidovorax sp. JS42



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.47   STD DEV: 4.71
Acidovorax sp. JS42, complete genome - 1..4448856
4007 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 71.64	+1	212..694	+	160	121592437	-	Ajs_0001	-	NLP/P60 protein
2	 69.03	0	822..1922	+	366	121592438	-	Ajs_0002	-	phospho-2-dehydro-3-deoxyheptonate aldolase
3	 70.05	0	2149..4158	+	669	121592439	-	Ajs_0003	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
4	 70.90	0	4216..5019	-	267	121592440	-	Ajs_0004	-	regulatory proteins, IclR
5	 65.64	0	5262..6233	+	323	121592441	-	Ajs_0005	-	hypothetical protein
6	 70.30	0	6572..7177	-	201	121592442	-	Ajs_0006	-	hypothetical protein
7	 72.54	+1	7318..7947	-	209	121592443	-	Ajs_0007	-	hypothetical protein
8	 69.22	0	8260..9237	+	325	121592444	rdgC	Ajs_0008	-	recombination associated protein
9	 65.93	0	9306..10658	-	450	121592445	-	Ajs_0009	-	sodium:dicarboxylate symporter
10	 72.73	+1	10828..13482	+	884	121592446	-	Ajs_0010	-	multi-sensor hybrid histidine kinase
11	 71.63	+1	13553..14197	-	214	121592447	-	Ajs_0011	-	two component LuxR family transcriptional regulator
12	 70.73	0	14252..15505	+	417	121592448	-	Ajs_0012	-	nucleoside recognition domain-containing protein
13	 65.98	0	15982..16272	+	96	121592449	-	Ajs_0013	-	hypothetical protein
14	 69.02	0	16463..17650	-	395	121592450	-	Ajs_0014	-	beta-ketothiolase
15	 72.83	+1	17647..18198	-	183	121592451	-	Ajs_0015	-	hypothetical protein
16	 68.06	0	18211..18426	-	71	121592452	-	Ajs_0016	-	hypothetical protein
17	 72.42	+1	18538..19041	-	167	121592453	-	Ajs_0017	-	MerR family transcriptional regulator
18	 63.64	0	19038..19235	-	65	121592454	-	Ajs_0018	-	heavy metal transport/detoxification protein
19	 71.95	+1	19413..21761	+	782	121592455	-	Ajs_0019	-	heavy metal translocating P-type ATPase
20	 69.81	0	21945..23597	+	550	121592456	-	Ajs_0020	-	methyl-accepting chemotaxis sensory transducer
21	 69.89	0	23784..24527	-	247	121592457	-	Ajs_0021	-	hypothetical protein
22	 71.73	+1	24678..25802	-	374	121592458	-	Ajs_0022	-	NADH:flavin oxidoreductase/NADH oxidase
23	 66.01	0	26068..26676	-	202	121592459	-	Ajs_0023	-	glutathione S-transferase domain-containing protein
24	 68.45	0	26810..27145	-	111	121592460	-	Ajs_0024	-	hypothetical protein
25	 70.26	0	27142..27726	-	194	121592461	-	Ajs_0025	-	NADPH-dependent FMN reductase
26	 65.76	0	27939..29924	+	661	121592462	-	Ajs_0026	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
27	 65.20	0	29921..30601	+	226	121592463	-	Ajs_0027	-	methyltransferase GidB
28	 66.67	0	30636..31250	+	204	121592464	-	Ajs_0028	-	lysine exporter protein LysE/YggA
29	 66.54	0	31267..32037	+	256	121592465	-	Ajs_0029	-	chromosome segregation ATPase
30	 71.09	0	32124..32666	+	180	121592466	-	Ajs_0030	-	hypothetical protein
31	 69.98	0	32673..33668	+	331	121592467	-	Ajs_0031	-	chromosome segregation DNA-binding protein
32	 75.06	+1	33694..34491	+	265	121592468	-	Ajs_0032	-	methyltransferase type 12
33	 71.57	+1	34652..35692	+	346	121592469	-	Ajs_0033	-	peptidoglycan binding domain-containing protein
34	 70.00	0	35848..36177	-	109	121592470	-	Ajs_0034	-	sulfite dehydrogenase (cytochrome) subunit SorB
35	 71.99	+1	36284..37504	-	406	121592471	-	Ajs_0035	-	sulfite dehydrogenase (cytochrome) subunit SorA apoprotein
36	 72.19	+1	37587..38165	+	192	121592472	-	Ajs_0036	-	hypothetical protein
37	 71.90	+1	38189..38761	-	190	121592473	-	Ajs_0037	-	ECF subfamily RNA polymerase sigma-24 factor
38	 75.43	+1	38883..39749	-	288	121592474	-	Ajs_0038	-	AraC family transcriptional regulator
39	 71.97	+1	39815..41077	+	420	121592475	-	Ajs_0039	-	major facilitator superfamily transporter
40	 70.53	0	41155..42579	-	474	121592476	-	Ajs_0040	-	Fis family transcriptional regulator
41	 61.39	-1	42717..43796	-	359	121592477	-	Ajs_0041	-	integrase catalytic subunit
42	 70.60	0	44043..44423	-	126	121592478	-	Ajs_0042	-	calcium-binding EF-hand-containing protein
43	 68.76	0	44579..45151	+	190	121592479	-	Ajs_0043	-	ATP:cob(I)alamin adenosyltransferase
44	 69.03	0	45521..45943	-	140	121592480	-	Ajs_0044	-	hypothetical protein
45	 71.42	+1	46167..47324	+	385	121592481	-	Ajs_0045	-	extracellular ligand-binding receptor
46	 68.05	0	47449..48969	-	506	121592482	-	Ajs_0046	-	Acetyl-CoA hydrolase
47	 72.60	+1	49169..49909	+	246	121592483	-	Ajs_0047	-	hypothetical protein
48	 67.13	0	50045..51331	-	428	121592484	-	Ajs_0048	-	uracil-xanthine permease
49	 67.51	0	51534..52832	-	432	121592485	-	Ajs_0049	-	methyl-accepting chemotaxis sensory transducer
50	 67.94	0	52711..54834	-	707	121592486	-	Ajs_0050	-	radical SAM domain-containing protein
51	 73.14	+1	56009..57274	-	421	121592487	-	Ajs_0052	-	hypothetical protein
52	 63.23	0	57396..57686	+	96	121592488	-	Ajs_0053	-	hypothetical protein
53	 69.36	0	57800..60064	+	754	121592489	-	Ajs_0054	-	acetoacetyl-CoA synthetase
54	 70.75	0	60098..61027	-	309	121592490	-	Ajs_0055	-	LysR family transcriptional regulator
55	 69.40	0	61158..62144	+	328	121592491	-	Ajs_0056	-	hypothetical protein
56	 71.79	+1	62141..63388	+	415	121592492	-	Ajs_0057	-	L-carnitine dehydratase/bile acid-inducible protein F
57	 70.34	0	63385..64581	+	398	121592493	-	Ajs_0058	-	L-carnitine dehydratase/bile acid-inducible protein F
58	 65.81	0	64578..65045	+	155	121592494	-	Ajs_0059	-	hypothetical protein
59	 67.91	0	65113..66081	+	322	121592495	-	Ajs_0060	-	hypothetical protein
60	 68.57	0	66104..67261	+	385	121592496	-	Ajs_0061	-	acyl-CoA dehydrogenase domain-containing protein
61	 73.84	+1	67276..68307	+	343	121592497	-	Ajs_0062	-	acyl-CoA dehydrogenase domain-containing protein
62	 69.20	0	68417..69205	+	262	121592498	-	Ajs_0063	-	enoyl-CoA hydratase
63	 66.83	0	69263..69886	+	207	121592499	-	Ajs_0064	-	CDP-diacylglycerol--serine O-phosphatidyltransferase
64	 71.88	+1	70118..70885	+	255	121592500	-	Ajs_0065	-	septum site-determining protein MinC
65	 64.95	0	70937..71752	+	271	121592501	-	Ajs_0066	-	septum site-determining protein MinD
66	 64.04	0	71758..72024	+	88	121592502	-	Ajs_0067	-	cell division topological specificity factor MinE
67	 68.63	0	72101..72661	-	186	121592503	-	Ajs_0068	-	flavin reductase domain-containing protein
68	 72.80	+1	72768..73550	+	260	121592504	-	Ajs_0069	-	alpha/beta hydrolase fold
69	 68.51	0	73689..74879	+	396	121592505	-	Ajs_0070	-	extracellular ligand-binding receptor
70	 68.13	0	74892..76256	-	454	121592506	-	Ajs_0071	-	D-amino-acid dehydrogenase
71	 69.96	0	76320..77231	+	303	121592507	-	Ajs_0072	-	chromosome replication initiation inhibitor protein
72	 69.19	0	77302..77934	+	210	121592508	-	Ajs_0073	-	TetR family transcriptional regulator
73	 65.01	0	77935..78357	-	140	121592509	-	Ajs_0074	-	UspA domain-containing protein
74	 69.03	0	78477..79322	-	281	121592510	-	Ajs_0075	-	metallophosphoesterase
75	 70.16	0	79339..80310	-	323	121592511	-	Ajs_0076	-	LysR family transcriptional regulator
76	 65.99	0	80434..80874	+	146	121592512	-	Ajs_0077	-	hypothetical protein
77	 65.17	0	81052..82923	-	623	121592513	-	Ajs_0078	-	phosphoenolpyruvate carboxykinase
78	 66.67	0	83258..83491	-	77	121592514	-	Ajs_0079	-	hypothetical protein
79	 69.67	0	83527..84726	-	399	121592515	-	Ajs_0080	-	threonine dehydratase
80	 72.04	+1	84837..86492	-	551	121592516	-	Ajs_0081	-	acyl-CoA dehydrogenase domain-containing protein
81	 76.17	+2	86645..87307	-	220	121592517	-	Ajs_0082	-	hypothetical protein
82	 69.12	0	87355..88455	-	366	121592518	-	Ajs_0083	-	methionine synthase (B12-dependent)
83	 68.70	0	88553..90424	+	623	121592519	-	Ajs_0084	-	ATP-dependent DNA helicase RecQ
84	 73.65	+1	90425..91111	-	228	121592520	-	Ajs_0085	-	anaerobic ribonucleoside-triphosphate reductase activating protein
85	 68.75	0	91101..91292	-	63	121592521	-	Ajs_0086	-	hypothetical protein
86	 66.86	0	91374..93410	-	678	121592522	-	Ajs_0087	-	anaerobic ribonucleoside triphosphate reductase
87	 68.77	0	93706..97032	-	1108	121592523	-	Ajs_0088	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
88	 63.27	0	97384..98472	-	362	121592524	-	Ajs_0089	-	transposase, IS4 family protein
89	 61.39	-1	98635..99714	+	359	121592525	-	Ajs_0090	-	integrase catalytic subunit
90	 66.90	0	99819..100244	-	141	121592526	-	Ajs_0091	-	hemerythrin HHE cation binding domain-containing protein
91	 66.67	0	100319..102625	-	768	121592527	-	Ajs_0092	-	nitric oxide reductase large subunit
92	 73.32	+1	102763..104385	+	540	121592528	-	Ajs_0093	-	anaerobic nitric oxide reductase transcription regulator
93	 77.05	+2	104530..105579	+	349	121592529	-	Ajs_0094	-	hypothetical protein
94	 71.71	+1	105662..107050	+	462	121592530	-	Ajs_0095	-	L-serine ammonia-lyase
95	 68.32	0	107110..108318	+	402	121592531	-	Ajs_0096	-	aspartate aminotransferase
96	 68.03	0	108498..109448	+	316	121592532	-	Ajs_0097	-	hypothetical protein
97	 70.43	0	109495..111063	+	522	121592533	-	Ajs_0098	-	AMP-dependent synthetase and ligase
98	 69.68	0	111091..112086	+	331	121592534	-	Ajs_0099	-	hypothetical protein
99	 70.51	0	112249..112716	+	155	121592535	-	Ajs_0100	-	hypothetical protein
100	 70.78	0	112744..113763	-	339	121592536	-	Ajs_0101	-	hypothetical protein
66.47	MEAN

4.71	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.