IslandPath Analysis: Staphylococcus aureus subsp. aureus Mu3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.04   STD DEV: 3.32
Staphylococcus aureus subsp. aureus Mu3, complete genome - 1..2880168
2698 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 32.67	0	517..1878	+	453	156978332	dnaA	SAHV_0001	-	chromosomal replication initiation protein
2	 32.80	0	2156..3289	+	377	156978333	dnaN	SAHV_0002	-	DNA polymerase III subunit beta
3	 35.37	0	3670..3915	+	81	156978334	-	SAHV_0003	-	hypothetical protein
4	 33.69	0	3912..5024	+	370	156978335	recF	SAHV_0004	-	recombination protein F
5	 36.95	+1	5034..6968	+	644	156978336	gyrB	SAHV_0005	-	DNA gyrase subunit B
6	 36.67	+1	7005..9674	+	889	156978337	gyrA	SAHV_0006	-	DNA gyrase subunit A
7	 36.58	+1	9762..10592	-	276	156978338	-	SAHV_0007	-	hypothetical protein
8	 36.98	+1	10879..12414	+	511	156978339	hutH	SAHV_0008	-	histidine ammonia-lyase
9	 34.42	0	12793..14079	+	428	156978340	serS	SAHV_0009	-	seryl-tRNA synthetase
10	 37.07	+1	14730..15425	+	231	156978341	-	SAHV_0010	-	hypothetical protein
11	 33.94	0	15422..15751	+	109	156978342	-	SAHV_0011	-	hypothetical protein
12	 35.45	0	16094..17083	+	329	156978343	-	SAHV_0012	-	hypothetical protein
13	 32.43	0	17319..18314	+	331	156978344	-	SAHV_0013	-	hypothetical protein
14	 35.16	0	18329..20296	+	655	156978345	-	SAHV_0014	-	hypothetical protein
15	 31.54	0	20293..20739	+	148	156978346	rplI	SAHV_0015	-	50S ribosomal protein L9
16	 38.26	+1	20771..22171	+	466	156978347	dnaC	SAHV_0016	-	replicative DNA helicase
17	 36.60	+1	22449..23732	+	427	156978348	purA	SAHV_0017	-	adenylosuccinate synthetase
18	 36.44	+1	24929..25636	+	235	156978349	vicR	SAHV_0018	-	response regulator
19	 34.92	0	25649..27475	+	608	156978350	vicK	SAHV_0019	-	two-component sensor histidine kinase
20	 35.39	0	27441..28802	+	453	156978351	-	SAHV_0020	-	hypothetical protein
21	 32.70	0	28803..29591	+	262	156978352	-	SAHV_0021	-	hypothetical protein
22	 35.96	0	29980..30780	+	266	156978353	-	SAHV_0022	-	hypothetical protein
23	 38.34	+1	31007..33325	+	772	156978354	-	SAHV_0023	-	hypothetical protein
24	 39.38	+1	33693..34172	+	159	156978355	-	SAHV_0024	-	hypothetical protein
25	 28.32	-1	34455..35750	+	431	156978356	-	SAHV_0025	-	hypothetical protein
26	 24.58	-2	36165..36404	+	79	156978357	-	SAHV_0026	-	hypothetical protein
27	 34.37	0	36436..37110	-	224	156978358	tnp	SAHV_0027	-	transposase for IS-like element
28	 32.85	0	37201..37407	-	68	156978359	-	SAHV_0028	-	truncated replication protein for plasmid
29	 32.33	0	37411..38205	-	264	156978360	-	SAHV_0029	-	truncated replication protein for pUB110 plasmid
30	 30.86	0	38230..38310	-	26	156978361	-	SAHV_0030	-	hypothetical protein
31	 33.65	0	38429..39691	-	420	156978362	pre	SAHV_0031	-	plasmid recombination enzyme
32	 46.10	+2	39800..39940	+	46	156978363	-	SAHV_0032	-	hypothetical protein
33	 37.50	+1	39988..40179	+	63	156978364	-	SAHV_0033	-	hypothetical protein
34	 40.49	+2	40198..40602	-	134	156978365	bleO	SAHV_0034	-	bleomycin resistance protein
35	 42.28	+2	40819..41589	-	256	156978366	aadD	SAHV_0035	-	kanamycin nucleotidyltransferase
36	 34.00	0	42007..42456	-	149	156978367	tnp	SAHV_0036	-	transposase for IS-like element
37	 30.12	0	42540..42881	+	113	156978368	-	SAHV_0037	-	HMG-CoA synthase
38	 33.47	0	43678..44421	+	247	156978369	-	SAHV_0038	-	glycerophosphoryl diester phosphodiesterase-like protein
39	 29.14	-1	44518..44946	+	142	156978370	-	SAHV_0039	-	hypothetical protein
40	 30.59	0	44992..46998	-	668	156978371	mecA	SAHV_0040	-	penicillin binding protein 2 prime
41	 28.67	-1	47098..48855	+	585	156978372	mecR1	SAHV_0041	-	methicillin resistance protein
42	 25.54	-2	48855..49226	+	123	156978373	mecI	SAHV_0042	-	methicillin resistance regulatory protein
43	 28.91	-1	49713..50843	+	376	156978374	xylR	SAHV_0043	-	xylose repressor homologue
44	 30.53	0	50957..51349	-	130	156978375	-	SAHV_0044	-	hypothetical protein
45	 33.12	0	51353..52291	-	312	156978376	-	SAHV_0045	-	hypothetical protein
46	 32.30	0	52324..53388	-	354	156978377	-	SAHV_0046	-	hypothetical protein
47	 24.90	-2	53524..53784	+	86	156978378	-	SAHV_0047	-	hypothetical protein
48	 32.87	0	53784..54428	+	214	156978379	-	SAHV_0048	-	hypothetical protein
49	 34.23	0	54767..55435	-	222	156978380	-	SAHV_0049	-	hypothetical protein
50	 27.59	-1	55788..55961	-	57	156978381	-	SAHV_0050	-	hypothetical protein
51	 32.51	0	55963..56694	+	243	156978382	ermA	SAHV_0051	-	rRNA methylase
52	 36.40	+1	56820..57602	-	260	156978383	ant(9)	SAHV_0052	-	O-nucleotidylltransferase
53	 29.89	0	57753..58130	-	125	156978384	tnpC	SAHV_0053	-	transposase C
54	 33.86	0	58137..60029	-	630	156978385	tnpB	SAHV_0054	-	transposase B
55	 32.14	0	60026..61111	-	361	156978386	tnpA	SAHV_0055	-	transposase A
56	 33.96	0	61230..61547	-	105	156978387	-	SAHV_0056	-	hypothetical protein
57	 35.84	0	61568..62086	-	172	156978388	-	SAHV_0057	-	hypothetical protein
58	 32.05	0	62092..62403	-	103	156978389	-	SAHV_0058	-	hypothetical protein
59	 34.76	0	62490..62840	-	116	156978390	-	SAHV_0059	-	hypothetical protein
60	 35.05	0	63358..64986	-	542	156978391	ccrB	SAHV_0060	-	cassette chromosome recombinase B
61	 34.81	0	65008..66357	-	449	156978392	ccrA	SAHV_0061	-	cassette chromosome recombinase A
62	 34.45	0	66591..68384	-	597	156978393	-	SAHV_0062	-	hypothetical protein
63	 34.68	0	68384..68680	-	98	156978394	-	SAHV_0063	-	hypothetical protein
64	 25.12	-2	68873..69919	-	348	156978395	-	SAHV_0064	-	hypothetical protein
65	 32.80	0	70170..70547	-	125	156978396	tnp	SAHV_0065	-	transposase
66	 30.23	0	70659..71012	-	117	156978397	tnp	SAHV_0066	-	transposase
67	 30.79	0	70997..71311	-	104	156978398	-	SAHV_0067	-	hypothetical protein
68	 37.26	+1	71822..72406	-	194	156978399	-	SAHV_0068	-	hypothetical protein
69	 37.36	+1	73470..74165	-	231	156978400	kdpE	SAHV_0069	-	hypothetical protein
70	 36.71	+1	74140..76773	-	877	156978401	kdpD	SAHV_0070	-	hypothetical protein
71	 36.79	+1	77077..78753	+	558	156978402	-	SAHV_0071	-	potassium-transporting ATPase subunit A
72	 39.76	+2	78772..80793	+	673	156978403	kdpB	SAHV_0072	-	potassium-transporting ATPase B chain homologue
73	 37.14	+1	80842..81366	+	174	156978404	kdpC	SAHV_0073	-	potassium-transporting ATPase C chain homologue
74	 33.56	0	81911..82780	-	289	156978405	-	SAHV_0074	-	hypothetical protein
75	 36.66	+1	82790..83692	-	300	156978406	-	SAHV_0075	-	hypothetical protein
76	 40.48	+2	83728..83853	+	41	156978407	-	SAHV_0076	-	hypothetical protein
77	 27.29	-1	83886..84365	-	159	156978408	-	SAHV_0077	-	hypothetical protein
78	 28.83	-1	84428..84760	-	110	156978409	-	SAHV_0078	-	hypothetical protein
79	 29.67	-1	84805..85431	-	208	156978410	-	SAHV_0079	-	hypothetical protein
80	 31.21	0	85546..87054	+	502	156978411	-	SAHV_0080	-	hypothetical protein
81	 25.66	-2	87653..89386	+	577	156978412	-	SAHV_0081	-	hypothetical protein
82	 37.46	+1	89570..89908	-	112	156978413	-	SAHV_0082	-	hypothetical protein
83	 31.48	0	90330..91085	-	251	156978414	-	SAHV_0083	-	hypothetical protein
84	 30.65	0	91085..91345	-	86	156978415	-	SAHV_0084	-	hypothetical protein
85	 31.64	0	91482..92546	+	354	156978416	-	SAHV_0085	-	hypothetical protein
86	 33.48	0	92577..93911	+	444	156978417	-	SAHV_0086	-	hypothetical protein
87	 32.66	0	93930..95123	+	397	156978418	-	SAHV_0087	-	hypothetical protein
88	 38.91	+1	95790..96776	-	328	156978419	-	SAHV_0088	-	hypothetical protein
89	 26.96	-1	97085..97288	+	67	156978420	-	SAHV_0089	-	hypothetical protein
90	 30.30	0	97337..97633	+	98	156978421	-	SAHV_0090	-	hypothetical protein
91	 31.05	0	97832..98443	+	203	156978422	-	SAHV_0091	-	hypothetical protein
92	 31.24	0	98710..101862	+	1050	156978423	-	SAHV_0092	-	hypothetical protein
93	 31.88	0	101919..102401	+	160	156978424	-	SAHV_0093	-	hypothetical protein
94	 33.74	0	102607..103593	+	328	156978425	plc	SAHV_0094	-	1-phosphatidylinositol phosphodiesterase precurosr
95	 30.09	0	103814..104584	+	256	156978426	-	SAHV_0095	-	hypothetical protein
96	 29.31	-1	104636..105406	+	256	156978427	-	SAHV_0096	-	hypothetical protein
97	 29.95	0	105474..106241	+	255	156978428	-	SAHV_0097	-	hypothetical protein
98	 29.05	-1	106306..107076	+	256	156978429	-	SAHV_0098	-	hypothetical protein
99	 30.86	0	107143..107910	+	255	156978430	-	SAHV_0099	-	hypothetical protein
100	 33.69	0	108007..110244	+	745	156978431	-	SAHV_0100	-	hypothetical protein
33.04	MEAN

3.32	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.