IslandPath Analysis: Roseiflexus castenholzii DSM 13941



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.37   STD DEV: 3.89
Roseiflexus castenholzii DSM 13941, complete genome - 1..5723298
4330 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 56.83	0	370..1812	+	480	156740029	-	Rcas_0001	-	chromosomal replication initiator protein DnaA
2	 62.89	0	1923..3086	+	387	156740030	-	Rcas_0002	-	secreted hydrolase-like protein
3	 56.35	-1	3125..3502	+	125	156740031	-	Rcas_0003	-	thioesterase superfamily protein
4	 62.44	0	3540..3965	-	141	156740032	-	Rcas_0004	-	hypothetical protein
5	 56.71	0	3966..4196	-	76	156740033	-	Rcas_0005	-	hypothetical protein
6	 59.44	0	4259..4687	-	142	156740034	-	Rcas_0006	-	histidine triad (HIT) protein
7	 63.51	0	4718..6460	-	580	156740035	-	Rcas_0007	-	phosphotransferase domain-containing protein
8	 56.33	-1	6922..7395	+	157	156740036	-	Rcas_0008	-	transcription elongation factor GreA
9	 59.32	0	7529..8998	+	489	156740037	-	Rcas_0009	-	lysyl-tRNA synthetase
10	 56.63	0	9035..9283	+	82	156740038	-	Rcas_0010	-	hypothetical protein
11	 60.61	0	9480..9875	+	131	156740039	-	Rcas_0011	-	death-on-curing family protein
12	 64.00	0	9892..10830	+	312	156740040	-	Rcas_0012	-	NAD-dependent epimerase/dehydratase
13	 62.94	0	11062..12375	+	437	156740041	-	Rcas_0013	-	phospholipid/glycerol acyltransferase
14	 59.68	0	13696..14769	-	357	156740042	-	Rcas_0014	-	glycosyl transferase family protein
15	 63.49	0	14871..16382	+	503	156740043	-	Rcas_0015	-	cell envelope-related transcriptional attenuator
16	 57.96	0	16565..17104	+	179	156740044	-	Rcas_0016	-	thioesterase superfamily protein
17	 60.58	0	17324..18325	-	333	156740045	-	Rcas_0017	-	glycosyl transferase family protein
18	 63.59	0	18464..19081	+	205	156740046	-	Rcas_0018	-	BioY protein
19	 63.48	0	21418..22704	-	428	156740047	-	Rcas_0019	-	acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase
20	 62.93	0	22709..23590	-	293	156740048	-	Rcas_0020	-	amidinotransferase
21	 62.02	0	25868..27007	+	379	156740049	-	Rcas_0021	-	hypothetical protein
22	 63.83	0	27424..28374	+	316	156740050	-	Rcas_0022	-	glyoxalase/bleomycin resistance protein/dioxygenase
23	 59.59	0	28504..30525	-	673	156740051	-	Rcas_0023	-	sodium/hydrogen exchanger
24	 61.48	0	30940..31614	+	224	156740052	-	Rcas_0024	-	ECF subfamily RNA polymerase sigma-24 factor
25	 60.22	0	31620..32162	+	180	156740053	-	Rcas_0025	-	putative transmembrane anti-sigma factor
26	 67.85	+1	32298..32636	+	112	156740054	-	Rcas_0026	-	hypothetical protein
27	 60.23	0	33607..34134	-	175	156740055	-	Rcas_0027	-	single-strand binding protein
28	 60.99	0	34407..36539	+	710	156740056	-	Rcas_0028	-	glycosyl transferase group 1
29	 61.97	0	36569..38632	+	687	156740057	-	Rcas_0029	-	glycosyl transferase family protein
30	 58.26	0	38648..39301	+	217	156740058	-	Rcas_0030	-	deoxynucleoside kinase
31	 59.62	0	39423..41324	+	633	156740059	-	Rcas_0031	-	adenylate/guanylate cyclase
32	 61.32	0	41601..45938	+	1445	156740060	-	Rcas_0032	-	TPR repeat-containing protein
33	 54.72	-1	45982..46341	+	119	156740061	-	Rcas_0033	-	roadblock/LC7 family protein
34	 57.56	0	46487..46936	+	149	156740062	-	Rcas_0034	-	nucleoside-diphosphate kinase
35	 63.51	0	46943..48208	-	421	156740063	-	Rcas_0035	-	hypothetical protein
36	 61.75	0	48275..50185	-	636	156740064	-	Rcas_0036	-	VanW family protein
37	 59.54	0	50282..50983	-	233	156740065	-	Rcas_0037	-	DNA repair protein RadC
38	 63.38	0	51343..53136	-	597	156740066	-	Rcas_0038	-	peptidase M23B
39	 57.41	0	53764..54087	-	107	156740067	-	Rcas_0040	-	CutA1 divalent ion tolerance protein
40	 65.64	+1	54325..55779	+	484	156740068	-	Rcas_0041	-	aldehyde dehydrogenase
41	 61.47	0	55781..56665	-	294	156740069	-	Rcas_0042	-	hypothetical protein
42	 59.48	0	56990..57949	+	319	156740070	-	Rcas_0043	-	hypothetical protein
43	 63.61	0	57963..58976	+	337	156740071	-	Rcas_0044	-	integrase family protein
44	 59.75	0	59089..60288	+	399	156740072	-	Rcas_0045	-	NAD-dependent epimerase/dehydratase
45	 58.63	0	60431..62023	-	530	156740073	-	Rcas_0046	-	glycyl-tRNA synthetase
46	 58.20	0	62261..63205	-	314	156740074	-	Rcas_0047	-	integrase family protein
47	 60.42	0	63354..64361	-	335	156740075	-	Rcas_0048	-	nifR3 family TIM-barrel protein
48	 54.82	-1	64435..64662	-	75	156740076	-	Rcas_0049	-	hypothetical protein
49	 61.67	0	64741..66081	+	446	156740077	-	Rcas_0050	-	hypothetical protein
50	 60.22	0	66082..67074	-	330	156740078	-	Rcas_0051	-	hypothetical protein
51	 60.40	0	67172..67666	+	164	156740079	-	Rcas_0052	-	hypothetical protein
52	 58.64	0	67679..68164	-	161	156740080	-	Rcas_0053	-	hypothetical protein
53	 61.98	0	68332..69099	+	255	156740081	-	Rcas_0054	-	inositol monophosphatase
54	 59.55	0	69112..70179	+	355	156740082	-	Rcas_0055	-	radical SAM domain-containing protein
55	 63.06	0	70217..70438	+	73	156740083	-	Rcas_0056	-	hypothetical protein
56	 62.94	0	70479..71711	+	410	156740084	-	Rcas_0057	-	threonine dehydratase
57	 55.41	-1	71729..71950	+	73	156740085	-	Rcas_0058	-	hypothetical protein
58	 57.66	0	72044..72265	+	73	156740086	-	Rcas_0059	-	hypothetical protein
59	 63.00	0	72281..75718	-	1145	156740087	-	Rcas_0060	-	transcriptional activator domain-containing protein
60	 53.87	-1	76292..76846	+	184	156740088	-	Rcas_0061	-	colicin V production protein
61	 62.88	0	76893..79373	+	826	156740089	-	Rcas_0062	-	MutS2 family protein
62	 63.71	0	79381..79989	+	202	156740090	-	Rcas_0063	-	peptidoglycan-binding LysM
63	 56.01	-1	79986..80501	+	171	156740091	-	Rcas_0064	-	hypothetical protein
64	 63.57	0	80524..81621	+	365	156740092	-	Rcas_0065	-	polysaccharide deacetylase
65	 60.64	0	81867..83078	-	403	156740093	-	Rcas_0066	-	TRAP dicarboxylate transporter- DctP subunit
66	 53.01	-1	83306..83920	-	204	156740094	-	Rcas_0067	-	hypothetical protein
67	 49.89	-2	83942..85336	-	464	156740095	-	Rcas_0068	-	hypothetical protein
68	 67.04	+1	85876..88785	-	969	156740096	-	Rcas_0069	-	hypothetical protein
69	 68.81	+2	88782..89201	-	139	156740097	-	Rcas_0070	-	hypothetical protein
70	 70.78	+2	89188..89430	-	80	156740098	-	Rcas_0071	-	hypothetical protein
71	 42.22	-2	90026..91207	-	393	156740099	-	Rcas_0073	-	hypothetical protein
72	 61.78	0	91462..92751	-	429	156740100	-	Rcas_0074	-	phosphopyruvate hydratase
73	 61.64	0	92956..94029	-	357	156740101	-	Rcas_0075	-	DRTGG domain-containing protein
74	 62.33	0	94083..96179	-	698	156740102	-	Rcas_0076	-	acetyl coenzyme A synthetase subunit alpha
75	 61.84	0	96878..99592	-	904	156740103	-	Rcas_0077	-	leucyl-tRNA synthetase
76	 63.26	0	99635..100456	-	273	156740104	-	Rcas_0078	-	methyltransferase type 11
77	 45.93	-2	100541..101056	-	171	156740105	-	Rcas_0079	-	hypothetical protein
78	 53.79	-1	101058..102074	-	338	156740106	-	Rcas_0080	-	hypothetical protein
79	 50.30	-2	102424..102759	-	111	156740107	-	Rcas_0081	-	hypothetical protein
80	 52.81	-1	102756..102986	-	76	156740108	-	Rcas_0082	-	hypothetical protein
81	 61.99	0	103142..104125	-	327	156740109	-	Rcas_0083	-	ribose-phosphate pyrophosphokinase
82	 61.30	0	104416..105402	+	328	156740110	-	Rcas_0084	-	aldo/keto reductase
83	 62.98	0	105460..106272	+	270	156740111	-	Rcas_0085	-	hypothetical protein
84	 61.40	0	106490..108595	-	701	156740112	-	Rcas_0086	-	translation elongation factor G
85	 65.64	+1	109067..110431	-	454	156740113	-	Rcas_0087	-	FolC bifunctional protein
86	 48.72	-2	110552..110863	+	103	156740114	-	Rcas_0088	-	DNA polymerase beta subunit
87	 51.15	-2	110844..111191	+	115	156740115	-	Rcas_0089	-	hypothetical protein
88	 64.14	0	111188..113281	+	697	156740116	-	Rcas_0090	-	molybdopterin oxidoreductase
89	 65.13	+1	113278..113799	+	173	156740117	-	Rcas_0091	-	shikimate kinase
90	 62.19	0	114050..115009	+	319	156740118	-	Rcas_0092	-	hypothetical protein
91	 64.34	+1	115318..116433	+	371	156740119	-	Rcas_0093	-	3-dehydroquinate synthase
92	 49.03	-2	116430..116843	+	137	156740120	-	Rcas_0094	-	HI0074 family nucleotidyltransferase substrate binding protein
93	 51.92	-2	116840..117178	+	112	156740121	-	Rcas_0095	-	DNA polymerase beta subunit
94	 67.89	+1	117561..117968	-	135	156740122	-	Rcas_0097	-	Cna B domain-containing protein
95	 56.83	0	118188..118604	-	138	156740123	-	Rcas_0098	-	Cna B domain-containing protein
96	 64.89	+1	118773..120122	+	449	156740124	-	Rcas_0099	-	protein serine/threonine phosphatase
97	 63.75	0	120193..122010	+	605	156740125	-	Rcas_0100	-	DNA mismatch repair protein MutL
98	 60.78	0	122003..122716	-	237	156740126	-	Rcas_0101	-	DtxR family iron dependent repressor
99	 60.63	0	122743..123090	-	115	156740127	-	Rcas_0102	-	hypothetical protein
100	 66.27	+1	123087..124613	-	508	156740128	-	Rcas_0103	-	carbohydrate kinase FGGY
60.37	MEAN

3.89	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.