IslandPath Analysis: Burkholderia cenocepacia HI2424



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.90   STD DEV: 4.32
Burkholderia cenocepacia HI2424 chromosome 1, complete sequence - 1..3483902
3159 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.97	0	178..1755	+	525	116688025	dnaA	Bcen2424_0001	-	chromosomal replication initiation protein
2	 63.87	0	1926..3032	+	368	116688026	-	Bcen2424_0002	-	DNA polymerase III subunit beta
3	 62.14	-1	3224..5698	+	824	116688027	gyrB	Bcen2424_0003	-	DNA gyrase subunit B
4	 64.74	0	6509..8014	+	501	116688028	-	Bcen2424_0004	-	integrase catalytic subunit
5	 59.65	-1	8007..8804	+	265	116688029	-	Bcen2424_0005	-	IstB ATP binding domain-containing protein
6	 47.86	-2	8871..8987	-	38	116688030	-	Bcen2424_0006	-	DNA (cytosine-5-)-methyltransferase
7	 57.09	-2	9308..9568	+	86	116688031	-	Bcen2424_0007	-	transposase IS3/IS911 family protein
8	 64.15	0	9607..9924	+	105	116688032	-	Bcen2424_0008	-	putative insertion element protein
9	 66.10	0	15657..16187	-	176	116688033	-	Bcen2424_0009	-	cytochrome B561
10	 70.26	0	16187..17272	-	361	116688034	-	Bcen2424_0010	-	catalase domain-containing protein
11	 67.43	0	17431..17952	+	173	116688035	-	Bcen2424_0011	-	ECF subfamily RNA polymerase sigma-24 factor
12	 67.72	0	17949..18707	+	252	116688036	-	Bcen2424_0012	-	putative transmembrane anti-sigma factor
13	 60.55	-1	19024..19350	+	108	116688037	-	Bcen2424_0013	-	hypothetical protein
14	 58.81	-1	19296..19613	-	105	116688038	-	Bcen2424_0014	-	hypothetical protein
15	 59.30	-1	19796..20053	-	85	116688039	-	Bcen2424_0015	-	hypothetical protein
16	 60.91	-1	20072..20401	-	109	116688040	-	Bcen2424_0016	-	hypothetical protein
17	 58.24	-2	20433..20693	-	86	116688041	-	Bcen2424_0017	-	hypothetical protein
18	 65.89	0	21686..22201	+	171	116688042	-	Bcen2424_0018	-	hypothetical protein
19	 67.35	0	22304..23185	-	293	116688043	-	Bcen2424_0019	-	RNA polymerase sigma factor SigJ
20	 66.88	0	23185..23661	-	158	116688044	-	Bcen2424_0020	-	alkylhydroperoxidase
21	 58.97	-1	24004..24237	+	77	116688045	-	Bcen2424_0021	-	hypothetical protein
22	 69.27	0	24242..25468	+	408	116688046	-	Bcen2424_0022	-	hypothetical protein
23	 67.95	0	25452..26465	+	337	116688047	-	Bcen2424_0023	-	hypothetical protein
24	 70.96	0	26759..27061	+	100	116688048	-	Bcen2424_0024	-	hypothetical protein
25	 69.48	0	27114..27326	+	70	116688049	-	Bcen2424_0025	-	hypothetical protein
26	 70.87	0	27514..27870	+	118	116688050	-	Bcen2424_0026	-	hypothetical protein
27	 68.52	0	28136..31162	-	1008	116688051	-	Bcen2424_0027	-	type III restriction enzyme, res subunit
28	 68.05	0	31162..33180	-	672	116688052	-	Bcen2424_0028	-	site-specific DNA-methyltransferase (adenine-specific)
29	 64.45	0	33540..34667	-	375	116688053	-	Bcen2424_0029	-	outer membrane protein (porin)-like protein
30	 67.85	0	34950..35627	-	225	116688054	-	Bcen2424_0030	-	two component transcriptional regulator
31	 70.39	0	35641..37008	-	455	116688055	-	Bcen2424_0031	-	periplasmic sensor signal transduction histidine kinase
32	 66.55	0	37097..37954	-	285	116688056	-	Bcen2424_0032	-	binding-protein-dependent transport systems inner membrane component
33	 66.04	0	38014..38811	-	265	116688057	-	Bcen2424_0033	-	ABC transporter related
34	 67.86	0	38933..39937	-	334	116688058	-	Bcen2424_0034	-	ABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein
35	 68.33	0	40123..40905	-	260	116688059	-	Bcen2424_0035	-	flagellar biosynthetic protein FliR
36	 68.86	0	40930..41202	-	90	116688060	fliQ	Bcen2424_0036	-	flagellar biosynthesis protein FliQ
37	 65.09	0	41220..41981	-	253	116688061	fliP	Bcen2424_0037	-	flagellar biosynthesis protein FliP
38	 75.43	+1	42018..42599	-	193	116688062	-	Bcen2424_0038	-	flagellar biosynthesis protein, FliO
39	 67.69	0	42596..43084	-	162	116688063	-	Bcen2424_0039	-	flagellar motor switch protein FliN
40	 63.26	0	43077..44075	-	332	116688064	fliM	Bcen2424_0040	-	flagellar motor switch protein FliM
41	 68.35	0	44098..44631	-	177	116688065	fliL	Bcen2424_0041	-	flagellar basal body-associated protein FliL
42	 67.91	0	44844..45566	-	240	116688066	-	Bcen2424_0042	-	LrgB family protein
43	 74.26	+1	45580..46053	-	157	116688067	-	Bcen2424_0043	-	LrgA family protein
44	 70.33	0	46195..47121	+	308	116688068	-	Bcen2424_0044	-	LysR family transcriptional regulator
45	 61.24	-1	47146..47532	-	128	116688069	-	Bcen2424_0045	-	PilT domain-containing protein
46	 61.85	-1	47529..47777	-	82	116688070	-	Bcen2424_0046	-	prevent-host-death family protein
47	 67.50	0	47883..49445	-	520	116688071	-	Bcen2424_0047	-	EmrB/QacA family drug resistance transporter
48	 67.69	0	49622..50110	-	162	116688072	-	Bcen2424_0048	-	MarR family transcriptional regulator
49	 69.79	0	50285..50572	+	95	116688073	-	Bcen2424_0049	-	hypothetical protein
50	 72.01	+1	50854..52425	+	523	116688074	-	Bcen2424_0050	-	RND efflux system outer membrane lipoprotein
51	 71.27	+1	52457..53281	-	274	116688075	-	Bcen2424_0051	-	hypothetical protein
52	 67.85	0	53282..53788	-	168	116688076	-	Bcen2424_0052	-	general secretion pathway M protein
53	 73.44	+1	53785..55158	-	457	116688077	-	Bcen2424_0053	-	general secretion pathway protein L
54	 70.00	0	55185..56294	-	369	116688078	-	Bcen2424_0054	-	general secretion pathway protein K
55	 71.24	+1	56297..56995	-	232	116688079	-	Bcen2424_0055	-	general secretion pathway protein
56	 69.65	0	56973..57374	-	133	116688080	-	Bcen2424_0056	-	general secretion pathway protein I
57	 71.23	+1	57377..57946	-	189	116688081	-	Bcen2424_0057	-	general secretion pathway protein H
58	 64.46	0	57986..58438	-	150	116688082	-	Bcen2424_0058	-	general secretion pathway protein G
59	 71.78	+1	58614..59024	+	136	116688083	-	Bcen2424_0059	-	hypothetical protein
60	 68.47	0	59062..60279	-	405	116688084	-	Bcen2424_0060	-	general secretion pathway protein F
61	 68.67	0	60284..61783	-	499	116688085	-	Bcen2424_0061	-	general secretory pathway protein E
62	 66.58	0	61780..64104	-	774	116688086	-	Bcen2424_0062	-	general secretion pathway protein D
63	 64.04	0	64473..64967	+	164	116688087	-	Bcen2424_0063	-	lytic transglycosylase, catalytic
64	 66.06	0	65121..66434	+	437	116688088	-	Bcen2424_0064	-	cobalamin synthesis protein, P47K
65	 60.93	-1	66563..66841	-	92	116688089	-	Bcen2424_0065	-	histone family protein DNA-binding protein
66	 72.31	+1	67230..69161	+	643	116688090	mnmC	Bcen2424_0066	-	5-methylaminomethyl-2-thiouridine methyltransferase
67	 59.02	-1	69463..69789	+	108	116688091	-	Bcen2424_0067	-	hypothetical protein
68	 65.68	0	69833..71047	+	404	116688092	-	Bcen2424_0068	-	sodium/hydrogen exchanger
69	 62.81	0	71062..72177	+	371	116688093	-	Bcen2424_0069	-	carboxylate-amine ligase
70	 67.29	0	72682..73320	+	212	116688094	-	Bcen2424_0070	-	MarR family transcriptional regulator
71	 70.18	0	73349..74059	+	236	116688095	-	Bcen2424_0071	-	glutamine amidotransferase
72	 70.26	0	74288..75400	+	370	116688096	-	Bcen2424_0072	-	NADH:flavin oxidoreductase/NADH oxidase
73	 62.52	-1	75578..76108	+	176	116688097	-	Bcen2424_0073	-	nuclear protein SET
74	 70.44	0	76270..77754	-	494	116688098	-	Bcen2424_0074	-	periplasmic sensor signal transduction histidine kinase
75	 65.95	0	77876..78568	-	230	116688099	-	Bcen2424_0075	-	two component transcriptional regulator
76	 57.85	-2	78661..78921	+	86	116688100	-	Bcen2424_0076	-	hypothetical protein
77	 65.37	0	79021..79329	-	102	116688101	phhB	Bcen2424_0077	-	pterin-4-alpha-carbinolamine dehydratase
78	 67.71	0	79461..80423	-	320	116688102	phhA	Bcen2424_0078	-	phenylalanine 4-monooxygenase
79	 65.84	0	80493..80978	+	161	116688103	-	Bcen2424_0079	-	AsnC family transcriptional regulator
80	 68.91	0	81045..81578	-	177	116688104	-	Bcen2424_0080	-	adenylate cyclase
81	 71.35	+1	81787..82725	-	312	116688105	-	Bcen2424_0081	-	LysR family transcriptional regulator
82	 68.34	0	82916..84652	+	578	116688106	-	Bcen2424_0082	-	glucose-methanol-choline oxidoreductase
83	 65.64	0	85086..85865	+	259	116688107	-	Bcen2424_0083	-	ABC transporter related
84	 67.72	0	85862..86617	+	251	116688108	-	Bcen2424_0084	-	ABC transporter related
85	 64.92	0	86695..87894	+	399	116688109	-	Bcen2424_0085	-	branched chain amino acid ABC transporter periplasmic ligand-binding protein
86	 65.21	0	87945..88907	+	320	116688110	-	Bcen2424_0086	-	inner-membrane translocator
87	 67.69	0	88907..89884	+	325	116688111	-	Bcen2424_0087	-	inner-membrane translocator
88	 55.67	-2	89996..90295	+	99	116688112	-	Bcen2424_0088	-	hypothetical protein
89	 66.93	0	90949..92106	+	385	116688113	-	Bcen2424_0089	-	extracellular ligand-binding receptor
90	 67.09	0	92176..93360	+	394	116688114	-	Bcen2424_0090	-	inner-membrane translocator
91	 67.28	0	93365..95149	+	594	116688115	-	Bcen2424_0091	-	ABC transporter related
92	 66.93	0	95149..95904	+	251	116688116	-	Bcen2424_0092	-	ABC transporter related
93	 65.25	0	96438..98408	+	656	116688117	-	Bcen2424_0093	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
94	 63.76	0	98405..99091	+	228	116688118	-	Bcen2424_0094	-	methyltransferase GidB
95	 63.59	0	99143..99922	+	259	116688119	-	Bcen2424_0095	-	cobyrinic acid a,c-diamide synthase
96	 65.03	0	99930..100847	+	305	116688120	-	Bcen2424_0096	-	parB-like partition proteins
97	 67.46	0	100858..101988	+	376	116688121	-	Bcen2424_0097	-	citrate transporter
98	 58.18	-2	102123..102440	+	105	116688122	-	Bcen2424_0098	-	hypothetical protein
99	 65.14	0	102555..103079	+	174	116688123	-	Bcen2424_0099	-	F0F1-type ATP synthase subunit I-like protein
100	 60.92	-1	103190..104041	+	283	116688124	-	Bcen2424_0100	-	F0F1 ATP synthase subunit A
66.90	MEAN

4.32	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.