IslandPath Analysis: Aeromonas hydrophila subsp. hydrophila ATCC 7966



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.23   STD DEV: 5.38
Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome - 1..4744448
4122 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 59.01	0	223..1593	+	456	117617947	dnaA-1	AHA_0001	-	chromosomal replication initiator protein DnaA
2	 60.78	0	1677..2780	+	367	117619320	dnaN	AHA_0002	-	DNA polymerase III, beta subunit
3	 58.61	0	2783..3886	+	367	117618875	recF	AHA_0003	-	DNA replication and repair protein RecF
4	 60.82	0	3883..6294	+	803	117619604	gyrB	AHA_0004	-	DNA gyrase, B subunit
5	 64.81	0	6409..6786	-	125	117620029	-	AHA_0005	-	glyoxalase family protein superfamily
6	 66.24	0	6853..7557	-	234	117619844	-	AHA_0006	-	transcriptional regulator
7	 57.73	0	7792..8205	+	137	117619417	-	AHA_0007	-	16 kDa heat shock protein A
8	 62.79	0	8298..8735	+	145	117620203	-	AHA_0008	-	16 kDa heat shock protein A
9	 61.79	0	8809..10059	-	416	117619762	avtA	AHA_0009	-	valine--pyruvate transaminase
10	 63.25	0	10343..10576	+	77	117618464	-	AHA_0011	-	hypothetical protein
11	 66.67	0	10506..11330	-	274	117620591	-	AHA_0010	-	AraC/XylS family transcriptional regulator
12	 65.43	0	11423..12550	+	375	117617786	-	AHA_0012	-	multidrug resistance protein D
13	 64.62	0	12555..13238	-	227	117619332	-	AHA_0013	-	KDP operon transcriptional regulatory protein KdpE
14	 67.40	0	13269..15857	-	862	117618215	-	AHA_0014	-	sensory kinase in two-component regulatory system wtih KdpE
15	 67.23	0	15961..16488	-	175	117618866	kdpC	AHA_0015	-	K+-transporting ATPase, C subunit
16	 66.47	0	16549..18606	-	685	117618415	kdpB	AHA_0016	-	K+-transporting ATPase, B subunit
17	 66.96	0	18662..20344	-	560	117619718	kdpA	AHA_0017	-	potassium-transporting ATPase subunit A
18	 61.54	0	20355..20432	-	25	117619090	-	AHA_0018	-	putative K+-transporting ATPase, F subunit KdpF
19	 63.04	0	20671..22020	-	449	117619313	gor	AHA_0019	-	glutathione-disulfide reductase
20	 60.26	0	22097..24094	-	665	117619870	-	AHA_0020	-	sensor histidine kinase
21	 62.12	0	24187..27267	-	1026	117620367	-	AHA_0021	-	acriflavin resistance plasma membrane protein
22	 61.16	0	27283..28389	-	368	117618003	-	AHA_0022	-	RND efflux transporter
23	 55.93	-1	28422..29045	-	207	117621549	-	AHA_0023	-	TetR family transcriptional regulator
24	 60.95	0	29998..30399	+	133	117617579	-	AHA_0028	-	ricin-type beta-trefoil lectin domain-containing protein
25	 67.50	0	30404..31483	-	359	117618020	pyk-1	AHA_0029	-	pyruvate kinase
26	 63.00	0	31551..32888	-	445	117618107	-	AHA_0030	-	sugar phosphate permease
27	 62.88	0	33247..34461	+	404	117620576	-	AHA_0031	-	ABC-type Fe3+ transport system, periplasmic component
28	 67.04	0	34458..36890	+	810	117617927	-	AHA_0032	-	phosphoglycerate transport regulatory protein PgtB
29	 66.67	0	36874..38151	+	425	117618408	-	AHA_0033	-	C4-dicarboxylate transport transcriptional regulatory protein DctD
30	 69.52	+1	38203..38517	+	104	117618898	-	AHA_0034	-	hypothetical protein
31	 62.61	0	38565..39377	-	270	117619349	-	AHA_0035	-	Cof family hydrolase
32	 66.38	0	39471..40511	-	346	117619794	-	AHA_0036	-	lysophospholipase L2
33	 60.96	0	40508..41173	-	221	117620171	-	AHA_0037	-	chloramphenicol acetyltransferase
34	 63.78	0	41173..41934	-	253	117621457	-	AHA_0038	-	tRNA guanosine-2'-O-methyltransferase
35	 62.51	0	42129..44246	-	705	117621008	-	AHA_0039	-	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase ((ppGpp)ase)
36	 60.14	0	44384..44659	-	91	117618766	rpoZ	AHA_0040	-	DNA-directed RNA polymerase, omega subunit
37	 57.89	0	44739..45593	-	284	117618161	-	AHA_0041	-	guanylate kinase
38	 66.02	0	45637..46719	-	360	117619639	-	AHA_0042	-	lipopolysaccharide heptosyltransferase
39	 62.61	0	46888..47601	+	237	117619128	kdkA	AHA_0043	-	3-deoxy-D-manno-octulosonic-acid kinase
40	 66.42	0	47729..48535	+	268	117620540	-	AHA_0044	-	sensory box/GGDEF family protein, putative
41	 62.34	0	48543..49397	-	284	117619968	-	AHA_0045	-	hypothetical protein
42	 65.36	0	49441..49899	+	152	117621435	-	AHA_0046	-	hypothetical protein
43	 64.20	0	50054..50215	-	53	117620833	-	AHA_0047	-	hypothetical protein
44	 61.72	0	50200..51129	-	309	117620104	-	AHA_0048	-	hypothetical protein
45	 67.79	+1	51191..52165	+	324	117619911	-	AHA_0050	-	LysR family transcriptional regulator
46	 65.48	0	52144..53157	-	337	117620470	trpS-1	AHA_0049	-	tryptophanyl-tRNA synthetase II
47	 57.24	0	53349..53783	-	144	117617588	-	AHA_0051	-	universal stress protein A
48	 66.41	0	54250..55437	+	395	117619088	-	AHA_0052	-	trans-2-enoyl-CoA reductase
49	 67.28	0	55453..57243	-	596	117618778	-	AHA_0053	-	TPR repeat-containing protein
50	 57.62	0	57348..57977	+	209	117619373	-	AHA_0054	-	ferritin
51	 64.23	0	58135..59322	+	395	117621427	-	AHA_0055	-	hypothetical protein
52	 63.39	0	59510..60730	-	406	117620819	-	AHA_0056	-	fosmidomycin resistance protein
53	 61.19	0	60918..61556	+	212	117621422	-	AHA_0057	-	leucine export protein LeuE
54	 58.77	0	61600..62346	-	248	117621156	-	AHA_0058	-	hypothetical protein
55	 48.79	-2	62289..63905	-	538	117619547	-	AHA_0059	-	hypothetical protein
56	 59.44	0	63908..66385	-	825	117618331	-	AHA_0060	-	hypothetical protein
57	 58.56	0	66437..67102	-	221	117620928	-	AHA_0061	-	hypothetical protein
58	 61.81	0	67162..67737	-	191	117617654	matB	AHA_0062	-	fimbrillin MatB
59	 47.92	-2	68337..68960	+	207	117617713	evgA	AHA_0063	-	positive transcription regulator EvgA
60	 58.50	0	68963..72550	+	1195	117618556	-	AHA_0064	-	virulence sensor protein BvgS
61	 60.32	0	72586..73026	-	146	117619105	-	AHA_0065	-	hypothetical protein
62	 62.62	0	73217..74872	+	551	117619897	-	AHA_0066	-	sensor histidine kinase
63	 60.25	0	75002..75733	+	243	117620033	-	AHA_0067	-	response regulator receiver domain-containing protein
64	 63.78	0	75855..77033	+	392	117620100	-	AHA_0068	-	inner membrane protein YhjX
65	 69.96	+1	77107..78231	-	374	117619549	purK	AHA_0069	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
66	 69.61	+1	78228..78737	-	169	117619504	purE-1	AHA_0070	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
67	 63.70	0	78800..79102	-	100	117618928	-	AHA_0071	-	hypothetical protein
68	 63.13	0	79107..80180	-	357	117617880	-	AHA_0072	-	sodium bicarbonate cotransporter
69	 67.00	0	80145..81047	+	300	117621439	-	AHA_0073	-	regulatory protein, LysR:LysR, substrate-binding
70	 60.57	0	81312..83147	+	611	117621264	-	AHA_0074	-	vitamin B12 transporter BtuB
71	 60.75	0	83265..84059	+	264	117620688	murI	AHA_0075	-	glutamate racemase
72	 55.69	-1	84078..84569	-	163	117620589	-	AHA_0076	-	RNA-binding protein
73	 60.58	0	90960..92225	+	421	117620035	codA	AHA_0082	-	cytosine deaminase
74	 58.75	0	92274..92690	+	138	117619448	crcB	AHA_0083	-	CrcB protein
75	 58.70	0	92756..93508	+	250	117617949	-	AHA_0084	-	ubiquinone/menaquinone biosynthesis methyltransferase UbiE
76	 64.04	0	93517..94125	+	202	117620541	-	AHA_0085	-	hypothetical protein
77	 63.44	0	94125..95765	+	546	117620525	ubiB	AHA_0086	-	putative ubiquinone biosynthesis protein UbiB
78	 56.22	-1	95806..96054	+	82	117621220	tatA	AHA_0087	-	twin argininte translocase protein A
79	 61.49	0	96058..96501	+	147	117619738	tatB	AHA_0088	-	twin arginine-targeting protein translocase TatB
80	 60.45	0	96498..97253	+	251	117620328	tatC	AHA_0089	-	twin arginine-targeting protein translocase TatC
81	 67.43	0	97365..98150	+	261	117620562	-	AHA_0090	-	deoxyribonuclease TatD
82	 63.53	0	98154..99173	+	339	117620960	hemB	AHA_0091	-	delta-aminolevulinic acid dehydratase
83	 64.66	0	99396..101438	+	680	117619647	prlC	AHA_0092	-	oligopeptidase A
84	 64.11	0	101643..104186	+	847	117617732	-	AHA_0093	-	MorA
85	 68.81	+1	104281..105027	+	248	117617673	-	AHA_0094	-	hypothetical protein
86	 64.44	0	105382..106371	-	329	117618117	-	AHA_0095	-	hypothetical protein
87	 65.19	0	106568..108058	-	496	117621186	-	AHA_0096	-	guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase
88	 60.70	0	108073..109362	-	429	117620754	-	AHA_0097	-	ATP-dependent RNA helicase RhlB
89	 54.43	-1	109476..109802	+	108	117617736	trx	AHA_0098	-	thioredoxin
90	 59.32	0	110010..111275	+	421	117621426	rho	AHA_0099	-	transcription termination factor Rho
91	 65.54	0	111589..112389	+	266	117619367	-	AHA_0100	-	hypothetical protein
92	 64.01	0	112420..113889	+	489	117620729	-	AHA_0101	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
93	 63.52	0	114058..114756	+	232	117619055	fre	AHA_0102	-	FMN reductase
94	 61.24	0	114886..115143	-	85	117619287	-	AHA_0103	-	hypothetical protein
95	 64.60	0	115445..117862	+	805	117618922	-	AHA_0104	-	extracellular lipase
96	 66.67	0	118002..118835	-	277	117618367	-	AHA_0105	-	GlpG protein
97	 62.96	0	118832..119155	-	107	117617882	-	AHA_0106	-	thiosulfate sulfurtransferase GlpE
98	 66.67	0	119226..119912	+	228	117619363	-	AHA_0108	-	amino acid transporter LysE
99	 68.35	+1	119909..120742	-	277	117618648	-	AHA_0107	-	AraC family transcriptional regulator
100	 64.81	0	120746..121447	-	233	117620159	-	AHA_0109	-	high-affinity branched-chain amino acid ABC transporter, ATP-binding protein LivF
62.23	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.