IslandPath Analysis: Mycobacterium leprae TN



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 59.70   STD DEV: 3.21
Mycobacterium leprae TN, complete genome - 1..3268203
1605 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 53.64	-1	1..1566	+	521	15826866	dnaA	ML0001	-	chromosomal replication initiation protein
2	 54.08	-1	2081..3280	+	399	15826867	dnaN	ML0002	-	DNA polymerase III subunit beta
3	 53.80	-1	3281..4438	+	385	15826868	recF	ML0003	-	recombination protein F
4	 57.19	0	4435..5004	+	189	15826869	-	ML0004	-	hypothetical protein
5	 50.47	-2	5229..7265	+	678	15826870	gyrB	ML0005	-	DNA gyrase subunit B
6	 52.19	-2	7318..11067	+	1249	15826871	gyrA	ML0006	-	putative DNA gyrase subunit A
7	 56.47	-1	11195..12106	+	303	15826872	-	ML0007	-	hypothetical protein
8	 46.93	-2	12856..13230	-	124	15826873	-	ML0008	-	hypothetical protein
9	 43.23	-2	13775..13966	+	63	15826874	-	ML0009	-	hypothetical protein
10	 56.10	-1	15993..16541	+	182	15826875	ppiA	ML0011	-	putative peptidyl-prolyl cis-trans isomerase
11	 56.52	0	16566..16979	-	137	15826876	-	ML0012	-	hypothetical protein
12	 57.45	0	17134..17415	-	93	15826877	-	ML0013	-	putative septation inhibitor protein
13	 57.80	0	18325..19023	+	232	15826878	pabA	ML0015	-	para-aminobenzoate synthase component II
14	 58.75	0	19001..20869	-	622	15826879	pknB	ML0016	-	putative serine/threonine protein kinase
15	 60.58	0	20879..22192	-	437	15826880	pknA	ML0017	-	putative serine/threonine protein kinase
16	 61.33	0	22189..23667	-	492	15826881	pbpA	ML0018	-	putative penicillin-binding protein
17	 56.58	0	23664..25061	-	465	15826882	rodA	ML0019	-	putative cell-division protein
18	 60.92	0	25058..26587	-	509	15826883	-	ML0020	-	hypothetical protein
19	 57.48	0	26584..27051	-	155	15826884	-	ML0021	-	hypothetical protein
20	 61.28	0	27173..28639	-	488	15826885	-	ML0022	-	hypothetical protein
21	 56.09	-1	28954..29265	-	103	15826886	-	ML0023	-	hypothetical protein
22	 51.98	-2	29775..30026	+	83	15826887	-	ML0024	-	hypothetical protein
23	 60.14	0	30293..30583	-	96	15826888	-	ML0025	-	hypothetical protein
24	 59.08	0	33100..33705	+	201	15826889	-	ML0028	-	hypothetical protein
25	 56.44	-1	34033..34638	-	201	15826890	-	ML0029	-	hypothetical protein
26	 64.62	+1	34750..35091	-	113	15826891	-	ML0030	-	hypothetical protein
27	 60.81	0	35287..36123	-	278	15826892	-	ML0031	-	hypothetical protein
28	 58.82	0	36321..39239	+	972	15826893	leuS	ML0032	-	leucyl-tRNA synthetase
29	 60.85	0	50656..51996	+	446	15826894	-	ML0041	-	secreted protease
30	 59.26	0	51993..53396	+	467	15826895	-	ML0042	-	hypothetical protein
31	 55.85	-1	54698..55039	+	113	15826896	-	ML0044	-	hypothetical protein
32	 60.43	0	58020..59558	-	512	15826897	-	ML0047	-	hypothetical protein
33	 59.68	0	59555..61315	-	586	15826898	-	ML0048	-	hypothetical protein
34	 54.17	-1	61406..61693	-	95	15826899	-	ML0049	-	hypothetical protein
35	 56.44	-1	61720..62022	-	100	15826900	-	ML0050	-	hypothetical protein
36	 58.97	0	62201..63109	-	302	15826901	-	ML0051	-	PPE-family protein
37	 59.48	0	63319..65112	-	597	15826902	-	ML0052	-	hypothetical protein
38	 59.46	0	65186..67420	-	744	15826903	-	ML0053	-	hypothetical protein
39	 58.78	0	67417..68862	-	481	15826904	-	ML0054	-	hypothetical protein
40	 59.41	0	68866..70587	-	573	15826905	-	ML0055	-	hypothetical protein
41	 55.10	-1	70584..71093	-	169	15826906	-	ML0056	-	hypothetical protein
42	 58.49	0	77709..82292	+	1527	15826907	gltB	ML0061	-	putative ferredoxin-dependent glutamate synthase
43	 60.05	0	82285..83751	+	488	15826908	gltD	ML0062	-	glutamate synthase subunit beta
44	 55.81	-1	85968..86612	-	214	15826909	-	ML0064	-	putative transcriptional regulator
45	 54.48	-1	86681..88165	+	494	15826910	-	ML0065	-	putative monooxygenase
46	 60.97	0	88246..88719	-	157	15826911	menG	ML0066	-	ribonuclease activity regulator protein RraA
47	 56.83	0	88741..89106	-	121	15826912	hns	ML0067	-	histone-like protein
48	 60.81	0	89620..90336	-	238	15826913	-	ML0068	-	hypothetical protein
49	 59.40	0	90521..90919	-	132	15826914	-	ML0069	-	hypothetical protein
50	 60.98	0	91296..91559	-	87	15826915	-	ML0070	-	hypothetical protein
51	 58.24	0	91913..92446	-	177	15826916	-	ML0071	-	hypothetical protein
52	 53.85	-1	92647..93270	-	207	15826917	sodA	ML0072	-	superoxide dismutase
53	 60.68	0	94092..95126	+	344	15826918	-	ML0073	-	hypothetical protein
54	 61.76	0	95132..95947	+	271	15826919	glpQ	ML0074	-	putative glycerophosphoryl diester phosphodiesterase
55	 65.22	+1	98425..99393	+	322	15826920	pheA	ML0078	-	prephenate dehydratase
56	 60.06	0	99390..100085	+	231	15826921	-	ML0079	-	putative phosphoglycerate mutase
57	 61.79	0	100648..102000	-	450	15826922	-	ML0081	-	hypothetical protein
58	 61.96	0	102122..103375	+	417	15826923	serS	ML0082	-	seryl-tRNA synthetase
59	 59.69	0	109049..109822	+	257	15826924	-	ML0087	-	putative acyltransferase
60	 64.42	+1	110329..111174	+	281	15826925	-	ML0089	-	hypothetical protein
61	 59.63	0	113153..113863	-	236	15826926	-	ML0091	-	28 kDa antigen precursor
62	 57.97	0	114130..115371	+	413	15826927	glf	ML0092	-	putative UDP-galactopyranose mutase
63	 59.32	0	115371..117302	+	643	15826928	-	ML0093	-	hypothetical protein
64	 62.18	0	117295..117873	+	192	15826929	-	ML0094	-	hypothetical protein
65	 59.19	0	117870..118778	+	302	15826930	-	ML0095	-	phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase
66	 60.56	0	118819..120768	+	649	15826931	-	ML0096	-	hypothetical protein
67	 60.52	0	121157..122149	+	330	15826932	fbpA	ML0097	-	antigen 85A, mycolytransferase
68	 63.69	+1	122310..123215	+	301	15826933	fbpC	ML0098	-	antigen 85C, mycolyltransferase
69	 59.94	0	123370..124380	+	336	15826934	-	ML0099	-	hypothetical protein
70	 61.37	0	124599..126506	+	635	15826935	fadD32	ML0100	-	acyl-CoA synthetase
71	 60.80	0	126518..131872	+	1784	15826936	pks13	ML0101	-	polyketide synthase
72	 59.20	0	131869..133422	+	517	15826937	accD4	ML0102	-	putative acyl CoA carboxylase [beta] subunit
73	 60.85	0	136573..139824	-	1083	15826938	embB	ML0104	-	putative arabinosyl transferase
74	 62.77	0	139821..143156	-	1111	15826939	embA	ML0105	-	putative arabinosyl transferase
75	 61.81	0	144115..147327	-	1070	15826940	embC	ML0106	-	putative arabinosyl transferase
76	 62.66	0	147460..149358	-	632	15826941	-	ML0107	-	hypothetical protein
77	 58.56	0	149361..150125	-	254	15826942	-	ML0108	-	short chain dehydrogenase
78	 59.07	0	150128..151510	-	460	15826943	-	ML0109	-	putative FAD-linked oxidoreductase
79	 56.45	-1	151578..151949	-	123	15826944	-	ML0110	-	hypothetical protein
80	 56.56	0	152783..153613	-	276	15826945	-	ML0112	-	putative ABC transporter component
81	 59.62	0	153663..154514	-	283	15826946	rfbE	ML0113	-	putative glycosyl transferase
82	 59.34	0	154576..155394	-	272	15826947	-	ML0114	-	putative ABC transporter ATP-binding component
83	 62.10	0	155413..155937	-	174	15826948	-	ML0115	-	hypothetical protein
84	 60.41	0	155965..157929	-	654	15826949	-	ML0116	-	hypothetical protein
85	 61.82	0	158056..159252	+	398	15826950	-	ML0117	-	hypothetical protein
86	 61.82	0	159249..160259	-	336	15826951	-	ML0118	-	putative oxidireductase
87	 61.08	0	160495..161730	-	411	15826952	lipE	ML0119	-	hydrolase
88	 61.17	0	161741..162577	-	278	15826953	echA1	ML0120	-	enoyl-CoA hydratase
89	 54.81	-1	163770..164039	-	89	15826954	-	ML0121	-	hypothetical protein
90	 54.42	-1	166949..167389	-	146	15826955	-	ML0124	-	hypothetical protein
91	 60.14	0	167598..168914	+	438	15826956	-	ML0125	-	putative glycosyl transferase
92	 57.30	0	169585..170406	+	273	15826957	-	ML0126	-	hypothetical protein
93	 48.99	-2	170662..171351	+	229	15826958	-	ML0127	-	hypothetical protein
94	 59.40	0	171616..172923	+	435	15826959	-	ML0128	-	putative glycosyl transferase
95	 59.67	0	173170..174426	-	418	15826960	-	ML0129	-	hypothetical protein
96	 55.97	-1	174466..175278	-	270	15826961	-	ML0130	-	hypothetical protein
97	 57.18	0	175441..176589	+	382	15826962	-	ML0131	-	putative oxidoreductase
98	 56.03	-1	177464..179212	+	582	161723272	fadD29	ML0132	-	acyl-CoA synthetase
99	 46.13	-2	179256..179888	+	210	15826964	-	ML0133	-	hypothetical protein
100	 57.16	0	180027..182150	+	707	15826965	fadD22	ML0134	-	acyl-CoA synthetase
59.70	MEAN

3.21	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.