IslandPath Analysis: Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.55   STD DEV: 5.27
Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91, complete genome - 1..4658697
3965 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 54.55	0	80..145	+	21	205351347	thrL	SG0001	-	threonine operon leader peptide
2	 56.07	0	227..2689	+	820	205351348	thrA	SG0002	-	aspartokinase I/homoserine dehydrogenase I
3	 57.74	0	2691..3620	+	309	205351349	thrB	SG0003	-	homoserine kinase
4	 56.25	0	3624..4910	+	428	205351350	thrC	SG0004	-	threonine synthase
5	 50.65	0	5004..5777	-	257	205351351	yaaA	SG0005	-	hypothetical protein
6	 55.63	0	5856..7286	-	476	205351352	yaaJ	SG0006	-	putative amino-acid transport protein
7	 54.40	0	7555..8508	+	317	205351353	talB	SG0007	-	transaldolase B
8	 55.84	0	8619..9209	+	196	205351354	mog	SG0008	-	molybdopterin biosynthesis Mog protein
9	 54.32	0	9266..9832	-	188	205351355	yaaH	SG0009	-	hypothetical protein
10	 49.88	0	10731..11135	-	134	205351356	yaaI	SG0011	-	possible exported protein
11	 52.48	0	11484..13400	+	638	205351357	dnaK	SG0012	-	DnaK protein (heat shock protein 70)
12	 54.04	0	13486..14625	+	379	205351358	dnaJ	SG0013	-	DnaJ protein
13	 40.51	-2	14906..15853	+	315	205351359	-	SG0014	-	putative regulatory protein
14	 40.58	-2	15980..16324	+	114	205351360	-	SG0015	-	hypothetical protein
15	 50.94	0	16385..16918	-	177	205351361	-	SG0016	-	hypothetical protein
16	 38.51	-2	16935..17378	-	147	205351362	-	SG0017	-	hypothetical protein
17	 46.67	-1	23224..23928	+	234	205351363	-	SG0022	-	hypothetical protein
18	 51.75	0	24358..24900	+	180	205351364	bcfA	SG0023	-	fimbrial subunit
19	 50.95	0	25001..25687	+	228	205351365	bcfB	SG0024	-	fimbrial chaperone
20	 54.39	0	25692..28313	+	873	205351366	bcfC	SG0025	-	fimbrial usher protein
21	 50.10	0	28314..29321	+	335	205351367	bcfD	SG0026	-	fimbrial subunit
22	 49.27	0	29322..29867	+	181	205351368	bcfF	SG0027	-	fimbrial subunit
23	 55.68	0	29883..30401	+	172	205351369	bcfG	SG0028	-	fimbrial subunit
24	 54.10	0	30367..31098	+	243	205351370	bcfH	SG0029	-	fimbrial chaperone
25	 55.08	0	31162..32007	+	281	205351371	bcfH	SG0030	-	hypothetical protein
26	 41.82	-2	32004..32333	+	109	205351372	-	SG0031	-	hypothetical protein
27	 37.11	-2	32433..32882	-	149	205351373	-	SG0032	-	hypothetical protein
28	 38.31	-2	33252..34256	+	334	205351374	-	SG0033	-	putative transcriptional regulator (lysR family)
29	 36.51	-2	34264..34704	-	146	205351375	-	SG0034	-	hypothetical protein
30	 46.42	-1	35227..36945	+	572	205351376	-	SG0035	-	possible sulfatase
31	 46.88	-1	36991..38562	-	523	205351377	-	SG0036	-	putative secreted 5'-nucleotidase
32	 44.49	-1	38661..39422	-	253	205351378	-	SG0037	-	hypothetical protein
33	 52.54	0	40016..41509	+	497	205351379	-	SG0038	-	putative secreted sulfatase
34	 49.54	0	41608..42798	+	396	205351380	-	SG0039	-	possible sulfatase regulatory protein
35	 50.08	0	42817..44070	+	417	205351381	-	SG0040	-	hypothetical protein
36	 49.88	0	44197..45912	+	571	205351382	-	SG0041	-	possible sulfatase
37	 56.30	0	46075..47241	+	388	205351383	nhaA	SG0042	-	Na(+)/H(+) antiporter 1
38	 50.56	0	47303..48202	+	299	205351384	nhaR	SG0043	-	transcriptional activator protein NhaR
39	 54.26	0	48257..50296	-	679	205351385	-	SG0044	-	putative glycosyl hydrolase
40	 46.21	-1	52164..52427	-	87	205351386	rpsT	SG0047	-	30S ribosomal protein S20
41	 47.69	0	52533..52748	+	71	205351387	yaaY	SG0047A	-	hypothetical protein
42	 57.09	0	52807..53694	+	295	205351388	ribF	SG0048	-	riboflavin biosynthesis protein RibF
43	 55.10	0	53739..56573	+	944	205351389	ileS	SG0049	-	isoleucyl-tRNA synthetase
44	 52.89	0	56573..57073	+	166	205351390	lspA	SG0050	-	lipoprotein signal peptidase
45	 54.44	0	57228..57677	+	149	205351391	slpA	SG0051	-	probable FkbB-type 16 kD peptidyl-prolyl cis-trans isomerase
46	 57.10	0	57680..58630	+	316	205351392	lytB	SG0052	-	LytB protein
47	 47.80	0	58830..60032	+	400	205351393	-	SG0053	-	hypothetical protein
48	 56.89	0	60048..60968	+	306	205351394	rihC	SG0054	-	putative nucleoside hydrolase (IUNH family)
49	 48.68	0	60990..61673	-	227	205351395	-	SG0055	-	transcriptional regulatory protein citb
50	 48.02	0	61675..63294	-	539	205351396	-	SG0056	-	sensor kinase cita
51	 63.75	+2	63429..64730	-	433	205351397	-	SG0057	-	oxaloacetate decarboxylase beta chain
52	 64.02	+2	64743..66515	-	590	205351398	-	SG0058	-	oxaloacetate decarboxylase alpha chain
53	 57.50	0	66532..66771	-	79	205351399	-	SG0059	-	oxaloacetate decarboxylase gamma chain (ec 4.1.1.3)
54	 48.59	0	67102..68268	-	388	205351400	-	SG0061	-	citrate-sodium symporter
55	 53.64	0	68513..69556	+	347	205351401	citC2	SG0062	-	[citrate (PRO-3S)-lyase] ligase
56	 56.46	0	69586..69879	+	97	205351402	citD2	SG0063	-	citrate lyase acyl carrier protein
57	 55.29	0	69876..70745	+	289	205351403	citE2	SG0064	-	citrate lyase beta chain
58	 54.77	0	70756..72276	+	506	205351404	citF2	SG0065	-	citrate lyase alpha chain
59	 56.16	0	72276..72827	+	183	205351405	citX2	SG0066	-	citx protein
60	 54.68	0	72805..73713	+	302	205351406	citG2	SG0067	-	citg protein
61	 56.33	0	73893..74714	+	273	205351407	dapB	SG0068	-	dihydrodipicolinate reductase
62	 54.92	0	75577..76725	+	382	205351408	carA	SG0069	-	carbamoyl-phosphate synthase small chain
63	 58.80	+1	76744..79971	+	1075	205351409	carB	SG0070	-	carbamoyl-phosphate synthase large chain
64	 45.71	-1	80245..80640	+	131	205351410	caiF	SG0071	-	transcriptional activator CaiF
65	 56.11	0	80718..81314	-	198	205351411	caiE	SG0072	-	carnitine operon protein CaiE
66	 56.23	0	81424..82209	-	261	205351412	caiD	SG0073	-	carnitine racemase
67	 53.61	0	83879..85096	-	405	205351413	caiB	SG0075	-	L-carnitine dehydratase
68	 52.58	0	85208..86350	-	380	205351414	caiA	SG0076	-	probable carnitine operon oxidoreductase CaiA
69	 53.56	0	86385..87902	-	505	205351415	caiT	SG0077	-	probable carnitine transporter
70	 51.88	0	88383..89153	+	256	205351416	fixA	SG0078	-	FixA protein
71	 58.81	+1	89169..90110	+	313	205351417	fixB	SG0079	-	FixB protein
72	 55.48	0	90160..91446	+	428	205351418	fixC	SG0080	-	FixC protein
73	 55.21	0	91443..91730	+	95	205351419	fixX	SG0081	-	ferredoxin like protein FixX
74	 53.91	0	91877..93217	+	446	205351420	yaaU	SG0082	-	putative metabolite transport protein
75	 48.05	0	93306..93536	+	76	205351421	-	SG0083	-	putative lipoprotein
76	 48.48	0	93849..94244	+	131	205351422	-	SG0084	-	probable secreted protein
77	 46.05	-1	94468..94758	-	96	205351423	-	SG0085	-	probable secreted protein
78	 46.46	-1	95656..97545	+	629	205351424	-	SG0086	-	putative sulfatase
79	 52.35	0	97952..98482	+	176	205351425	yabF	SG0087	-	putative NAD(P)H oxidoreductase
80	 58.13	+1	98475..100349	+	624	205351426	kefC	SG0088	-	glutathione-regulated potassium-efflux system protein KefC
81	 53.54	0	100548..101027	+	159	205351427	folA	SG0089	-	dihydrofolate reductase type I
82	 55.95	0	101133..101981	-	282	205351428	apaH	SG0090	-	bis(5'-nucleosyl)-tetraphosphatase
83	 54.50	0	101992..102369	-	125	205351429	apaG	SG0091	-	CorD protein
84	 52.43	0	102372..103193	-	273	205351430	ksgA	SG0092	-	dimethyladenosine transferase
85	 58.89	+1	103190..104179	-	329	205351431	pdxA	SG0093	-	pyridoxal phosphate biosynthetic protein PdxA
86	 54.23	0	104179..105465	-	428	205351432	surA	SG0094	-	survival protein SurA precursor
87	 52.56	0	105519..107879	-	786	205351433	imp	SG0095	-	organic solvent tolerance protein precursor
88	 54.00	0	108133..108945	+	270	205351434	djlA	SG0096	-	DnaJ-like protein
89	 57.42	0	109040..109699	-	219	205351435	rluA	SG0097	-	ribosomal large subunit pseudouridine synthase A
90	 56.97	0	109711..112617	-	968	205351436	hepA	SG0098	-	probable ATP-dependent helicase HepA
91	 56.63	0	112791..115142	-	783	205351437	polB	SG0099	-	DNA polymerase II
92	 49.60	0	115186..115806	-	206	205351438	-	SG0100	-	probable secreted protein
93	 42.62	-1	116324..116743	+	139	205351439	-	SG0101	-	hypothetical protein
94	 54.89	0	116749..117444	-	231	205351440	araD	SG0102	-	L-ribulose-5-phosphate 4-epimerase
95	 56.22	0	117585..119087	-	500	205351441	araA	SG0103	-	L-arabinose isomerase
96	 60.47	+1	119098..120807	-	569	205351442	araB	SG0104	-	L-ribulokinase
97	 53.90	0	121147..121992	+	281	205351443	araC	SG0105	-	arabinose operon regulatory protein
98	 56.51	0	122111..122878	+	255	205351444	yabI	SG0106	-	DedA family integral membrane protein
99	 57.91	+1	122917..123624	-	235	205351445	yabJ	SG0107	-	hypothetical ABC transporter
100	 59.84	+1	123608..125218	-	536	205351446	yabK	SG0108	-	putative ABC transporter integral membrane protein
52.55	MEAN

5.27	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.