IslandPath Analysis: Rhodococcus sp. RHA1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.46   STD DEV: 3.09
Rhodococcus sp. RHA1, complete genome - 1..7804765
7211 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 70.86	+1	1391..2581	-	396	111017023	-	RHA1_ro00001	-	hypothetical protein
2	 70.37	0	3556..4122	+	188	111017024	-	RHA1_ro00002	-	hypothetical protein
3	 68.97	0	4147..5319	+	390	111017025	-	RHA1_ro00003	-	hypothetical protein
4	 64.69	0	6182..6940	-	252	111017026	-	RHA1_ro00004	-	dehydrogenase
5	 71.16	+1	6935..8449	+	504	111017027	-	RHA1_ro00005	-	hypothetical protein
6	 62.28	-1	11208..11435	-	75	111017028	-	RHA1_ro00006	-	hypothetical protein
7	 72.55	+1	12456..12710	+	84	111017029	-	RHA1_ro00007	-	hypothetical protein
8	 68.95	0	15092..15310	+	72	111017030	-	RHA1_ro00008	-	hypothetical protein
9	 57.62	-2	15359..15568	+	69	111017031	-	RHA1_ro00009	-	transposase
10	 63.91	-1	15608..16624	+	338	111017032	-	RHA1_ro00010	-	transposase mutator family protein
11	 67.98	0	18122..20401	+	759	111017033	-	RHA1_ro00011	-	transposase
12	 64.91	0	21689..21916	-	75	111017034	-	RHA1_ro00012	-	glutaredoxin-like protein
13	 60.28	-2	22043..23263	-	406	111017035	-	RHA1_ro00013	-	transposase
14	 65.59	0	23518..24447	-	309	111017036	-	RHA1_ro00014	-	oxidoreductase
15	 66.55	0	25021..25911	+	296	111017037	-	RHA1_ro00015	-	DNA-ligase (ATP), C-terminal
16	 65.40	0	25986..26459	+	157	111017038	-	RHA1_ro00016	-	hypothetical protein
17	 64.74	0	26833..27300	+	155	111017039	-	RHA1_ro00017	-	magnesium ABC transporter ATPase
18	 65.83	0	27302..27541	+	79	111017040	-	RHA1_ro00018	-	hypothetical protein
19	 61.75	-1	27477..27659	-	60	111017041	-	RHA1_ro00019	-	hypothetical protein
20	 64.66	0	27656..27904	-	82	111017042	-	RHA1_ro00020	-	hypothetical protein
21	 65.31	0	27922..28803	+	293	111017043	-	RHA1_ro00021	-	universal stress protein
22	 68.68	0	28827..29423	+	198	111017044	-	RHA1_ro00022	-	hypothetical protein
23	 67.89	0	29439..30749	-	436	111017045	-	RHA1_ro00023	-	hypothetical protein
24	 66.46	0	30746..32179	-	477	111017046	-	RHA1_ro00024	-	hypothetical protein
25	 66.29	0	32241..32774	-	177	111017047	-	RHA1_ro00025	-	hypothetical protein
26	 68.42	0	32906..33760	-	284	111017048	-	RHA1_ro00026	-	universal stress protein
27	 67.45	0	33810..34826	-	338	111017049	-	RHA1_ro00027	-	hypothetical protein
28	 69.86	0	35002..35940	-	312	111017050	-	RHA1_ro00028	-	universal stress protein
29	 63.67	-1	35943..36743	-	266	111017051	-	RHA1_ro00029	-	ABC transporter permease
30	 64.16	-1	36733..37650	-	305	111017052	-	RHA1_ro00030	-	ABC transporter, ATP-binding protein
31	 67.26	0	37808..38821	+	337	111017053	-	RHA1_ro00031	-	hypothetical protein
32	 72.44	+1	38846..39313	-	155	111017054	-	RHA1_ro00032	-	hydrogenase maturation protease
33	 66.43	0	39310..40578	-	422	111017055	-	RHA1_ro00033	-	Ni-dependent hydrogenase large subunit
34	 67.43	0	40586..41371	-	261	111017056	-	RHA1_ro00034	-	hydrogenase
35	 70.79	+1	41371..42219	-	282	111017057	-	RHA1_ro00035	-	hydrogenase/ sulfur reductase
36	 69.48	0	42216..42677	-	153	111017058	-	RHA1_ro00036	-	cAMP binding protein
37	 69.00	0	42674..43831	-	385	111017059	-	RHA1_ro00037	-	ferredoxin
38	 69.86	0	43864..44145	-	93	111017060	-	RHA1_ro00038	-	hypothetical protein
39	 65.89	0	44222..45643	-	473	111017061	-	RHA1_ro00039	-	hypothetical protein
40	 64.29	-1	45853..46104	-	83	111017062	-	RHA1_ro00040	-	hypothetical protein
41	 66.58	0	46395..47549	+	384	111017063	-	RHA1_ro00041	-	penicillin-binding protein
42	 64.62	0	47559..48437	-	292	111017064	-	RHA1_ro00042	-	hypothetical protein
43	 65.65	0	48504..48797	-	97	111017065	-	RHA1_ro00043	-	hypothetical protein
44	 67.98	0	48796..49329	+	177	111017066	-	RHA1_ro00044	-	flavodoxin
45	 66.44	0	49933..53064	+	1043	111017067	-	RHA1_ro00045	-	trehalose-phosphatase
46	 68.82	0	53107..53709	-	200	111017068	-	RHA1_ro00046	-	hypothetical protein
47	 68.56	0	53898..54266	+	122	111017069	-	RHA1_ro00047	-	hypothetical protein
48	 63.58	-1	54366..55013	+	215	111017070	-	RHA1_ro00048	-	response regulator, two-component system
49	 66.78	0	55092..56813	+	573	111017071	-	RHA1_ro00049	-	sensor kinase, two-component system
50	 68.59	0	56936..57817	+	293	111017072	-	RHA1_ro00050	-	universal stress protein
51	 68.67	0	57830..58978	-	382	111017073	-	RHA1_ro00051	-	cation transporting ATPase
52	 71.74	+1	58975..59250	-	91	111017074	-	RHA1_ro00052	-	cation transporting ATPase
53	 67.20	0	59344..60093	-	249	111017075	-	RHA1_ro00053	-	hypothetical protein
54	 66.13	0	60270..60833	+	187	111017076	-	RHA1_ro00054	-	acyl-CoA synthetase
55	 67.79	0	60843..62357	+	504	111017077	-	RHA1_ro00055	-	hypothetical protein
56	 66.98	0	62407..63360	+	317	111017078	-	RHA1_ro00056	-	1-phosphofructokinase
57	 66.89	0	63638..64513	-	291	111017079	-	RHA1_ro00057	-	3-oxoacyl-[acyl-carrier-protein] synthase III
58	 64.77	0	64497..65552	-	351	111017080	-	RHA1_ro00058	-	3-oxoacyl-[acyl-carrier-protein] synthase III
59	 66.50	0	65779..66369	+	196	111017081	-	RHA1_ro00059	-	hypothetical protein
60	 67.44	0	66421..66678	+	85	111017082	-	RHA1_ro00060	-	hypothetical protein
61	 68.02	0	66752..67639	+	295	111017083	-	RHA1_ro00061	-	universal stress protein
62	 66.50	0	67975..68571	+	198	111017084	-	RHA1_ro00062	-	potassium channel protein TrkA
63	 67.49	0	68585..68827	-	80	111017085	-	RHA1_ro00063	-	hypothetical protein
64	 68.68	0	68903..69748	-	281	111017086	-	RHA1_ro00064	-	hypothetical protein
65	 64.24	-1	69745..71229	-	494	111017087	-	RHA1_ro00065	-	hypothetical protein
66	 68.75	0	71478..71909	-	143	111017088	-	RHA1_ro00066	-	transcriptional regulator
67	 69.28	0	71919..72722	+	267	111017089	-	RHA1_ro00067	-	epoxide hydrolase
68	 68.01	0	72568..73314	-	248	111017090	-	RHA1_ro00068	-	response regulator, two-component system
69	 68.67	0	73472..74320	+	282	111017091	-	RHA1_ro00069	-	hydrolase
70	 67.52	0	74280..74984	-	234	111017092	-	RHA1_ro00070	-	hypothetical protein
71	 67.88	0	75236..76717	+	493	111017093	-	RHA1_ro00071	-	major facilitator superfamily multidrug resistance protein
72	 69.81	0	76857..81278	+	1473	111017094	-	RHA1_ro00072	-	non-ribosomal peptide synthetase
73	 70.69	+1	81330..82697	+	455	111017095	-	RHA1_ro00073	-	sensor kinase, two-component system
74	 66.52	0	82670..83347	-	225	111017096	-	RHA1_ro00074	-	response regulator, two-component system
75	 73.80	+2	83452..84138	+	228	111017097	-	RHA1_ro00075	-	phosphatidic acid phosphatase, type 2
76	 67.14	0	84185..84610	+	141	111017098	-	RHA1_ro00076	-	hypothetical protein
77	 68.16	0	84652..85188	-	178	111017099	-	RHA1_ro00077	-	hypothetical protein
78	 68.22	0	85312..85698	+	128	111017100	-	RHA1_ro00078	-	Zn-containing alcohol dehydrogenase, C-terminal
79	 68.23	0	85641..86534	-	297	111017101	-	RHA1_ro00079	-	transposase
80	 65.79	0	86531..86872	-	113	111017102	-	RHA1_ro00080	-	transposase
81	 69.66	0	86875..87810	+	311	111017103	-	RHA1_ro00081	-	Zn-containing alcohol dehydrogenase, N-terminal
82	 67.43	0	87818..88729	+	303	111017104	-	RHA1_ro00082	-	hypothetical protein
83	 71.52	+1	88738..89190	+	150	111017105	-	RHA1_ro00083	-	hypothetical protein
84	 65.11	0	89196..89708	-	170	111017106	-	RHA1_ro00084	-	secreted copper binding protein
85	 69.76	0	89741..90451	-	236	111017107	-	RHA1_ro00085	-	enoyl-CoA hydratase
86	 69.38	0	90746..92182	+	478	111017108	-	RHA1_ro00086	-	hypothetical protein
87	 70.13	0	92302..93687	+	461	111017109	-	RHA1_ro00087	-	hypothetical protein
88	 70.11	0	93691..94737	-	348	111017110	-	RHA1_ro00088	-	hypothetical protein
89	 66.23	0	95348..95803	+	151	111017111	-	RHA1_ro00089	-	hypothetical protein
90	 66.95	0	95800..97224	+	474	111017112	-	RHA1_ro00090	-	alpha,alpha-trehalose-phosphate synthase (UDP-forming)
91	 68.07	0	97292..98362	+	356	111017113	-	RHA1_ro00091	-	hypothetical protein
92	 70.89	+1	98359..99471	+	370	111017114	-	RHA1_ro00092	-	glycosyltransferase
93	 71.59	+1	99468..100463	+	331	111017115	-	RHA1_ro00093	-	hypothetical protein
94	 69.94	0	100460..101284	+	274	111017116	-	RHA1_ro00094	-	sugar transferase
95	 66.80	0	101287..102057	-	256	111017117	-	RHA1_ro00095	-	hypothetical protein
96	 71.13	+1	102144..103286	-	380	111017118	-	RHA1_ro00096	-	hypothetical protein
97	 65.49	0	103391..103645	+	84	111017119	-	RHA1_ro00097	-	hypothetical protein
98	 67.54	0	103656..104453	-	265	111017120	-	RHA1_ro00098	-	sigma factor, sigma 70 type, group 3
99	 62.73	-1	104453..104884	-	143	111017121	-	RHA1_ro00099	-	anti-sigma factor, RsbW
100	 69.17	0	105031..105390	-	119	111017122	-	RHA1_ro00100	-	cold shock protein
67.46	MEAN

3.09	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.