IslandPath Analysis: Candidatus Methanoregula boonei 6A8



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 55.15   STD DEV: 4.87
Candidatus Methanoregula boonei 6A8, complete genome - 1..2542943
2450 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 52.13	0	346..1638	+	430	154149550	-	Mboo_0001	-	AAA ATPase
2	 53.66	0	1645..2136	+	163	154149551	-	Mboo_0002	-	AsnC family transcriptional regulator
3	 57.25	0	2146..3303	+	385	154149552	-	Mboo_0003	-	aminotransferase, class I and II
4	 57.00	0	3422..4435	+	337	154149553	-	Mboo_0004	-	adenylosuccinate synthetase
5	 59.44	0	4432..4611	+	59	154149554	-	Mboo_0005	-	hypothetical protein
6	 54.86	0	4623..5198	+	191	154149555	-	Mboo_0006	-	hypothetical protein
7	 59.05	0	5180..6124	+	314	154149556	-	Mboo_0007	-	cobalamin biosynthesis protein CobD
8	 59.20	0	6134..7030	+	298	154149557	-	Mboo_0008	-	pyridoxine biosynthesis protein
9	 58.83	0	7020..7619	+	199	154149558	-	Mboo_0009	-	glutamine amidotransferase subunit PdxT
10	 60.79	+1	7660..8340	+	226	154149559	-	Mboo_0010	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
11	 53.93	0	8438..9136	+	232	154149560	-	Mboo_0011	-	MIP family channel protein
12	 53.44	0	9146..9871	-	241	154149561	-	Mboo_0012	-	hypothetical protein
13	 55.91	0	9962..10342	-	126	154149562	-	Mboo_0013	-	HxlR family transcriptional regulator
14	 55.61	0	10509..11078	+	189	154149563	-	Mboo_0014	-	flavin reductase domain-containing protein
15	 60.68	+1	11102..11920	+	272	154149564	-	Mboo_0015	-	nitroreductase
16	 58.91	0	12008..12793	+	261	154149565	-	Mboo_0016	-	carboxymuconolactone decarboxylase
17	 57.95	0	12825..13409	+	194	154149566	-	Mboo_0017	-	NADPH-dependent FMN reductase
18	 55.46	0	13488..14174	+	228	154149567	-	Mboo_0018	-	NADPH-dependent FMN reductase
19	 61.59	+1	14181..14771	+	196	154149568	-	Mboo_0019	-	nitroreductase
20	 50.98	0	14815..15018	+	67	154149569	-	Mboo_0020	-	YHS domain-containing protein
21	 63.15	+1	15018..15443	+	141	154149570	-	Mboo_0021	-	beta-Ig-H3/fasciclin
22	 58.72	0	15560..17785	+	741	154149571	-	Mboo_0022	-	ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
23	 58.52	0	17997..20057	-	686	154149572	-	Mboo_0023	-	membrane-bound proton-translocating pyrophosphatase
24	 56.66	0	20562..22469	+	635	154149573	-	Mboo_0024	-	NADH dehydrogenase (quinone)
25	 57.11	0	22466..23323	+	285	154149574	-	Mboo_0025	-	respiratory-chain NADH dehydrogenase, subunit 1
26	 57.11	0	23328..23819	+	163	154149575	-	Mboo_0026	-	NADH ubiquinone oxidoreductase, 20 kDa subunit
27	 54.47	0	23820..24188	+	122	154149576	-	Mboo_0027	-	NADH dehydrogenase (ubiquinone), 30 kDa subunit
28	 60.46	+1	24188..25267	+	359	154149577	-	Mboo_0028	-	NADH dehydrogenase (ubiquinone)
29	 58.65	0	25274..25672	+	132	154149578	-	Mboo_0029	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
30	 36.05	-2	25697..26248	-	183	154149579	-	Mboo_0030	-	hypothetical protein
31	 53.97	0	26985..27362	+	125	154149580	-	Mboo_0031	-	large-conductance mechanosensitive channel-like protein
32	 58.77	0	27388..27843	-	151	154149581	-	Mboo_0032	-	hypothetical protein
33	 53.57	0	28158..28325	+	55	154149582	-	Mboo_0033	-	hypothetical protein
34	 56.75	0	28486..30906	+	806	154149583	-	Mboo_0034	-	phosphoenolpyruvate synthase
35	 59.94	0	30951..32348	-	465	154149584	-	Mboo_0035	-	DNA polymerase II small subunit
36	 61.11	+1	32459..33088	+	209	154149585	-	Mboo_0036	-	lysine exporter protein LysE/YggA
37	 59.32	0	33146..34111	+	321	154149586	-	Mboo_0037	-	hypothetical protein
38	 60.79	+1	34139..35227	+	362	154149587	-	Mboo_0038	-	radical SAM domain-containing protein
39	 59.33	0	35295..35594	-	99	154149588	-	Mboo_0039	-	hypothetical protein
40	 58.68	0	35710..36798	+	362	154149589	-	Mboo_0040	-	radical SAM domain-containing protein
41	 57.73	0	36864..37322	+	152	154149590	-	Mboo_0041	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
42	 60.09	+1	37349..37789	-	146	154149591	-	Mboo_0042	-	hypothetical protein
43	 60.03	+1	37782..38384	-	200	154149592	-	Mboo_0043	-	beta-lactamase domain-containing protein
44	 63.07	+1	38425..39702	+	425	154149593	-	Mboo_0044	-	thiamine biosynthesis protein ThiC
45	 60.49	+1	39752..41386	-	544	154149594	-	Mboo_0045	-	hypothetical protein
46	 52.82	0	41557..41910	+	117	154149595	-	Mboo_0046	-	anti-sigma-factor antagonist
47	 51.59	0	41975..42478	+	167	154149596	-	Mboo_0047	-	anti-sigma-factor antagonist
48	 58.99	0	42481..43509	+	342	154149597	-	Mboo_0048	-	GCN5-related N-acetyltransferase
49	 52.76	0	43523..44047	-	174	154149598	-	Mboo_0049	-	hypothetical protein
50	 56.85	0	44104..44541	-	145	154149599	-	Mboo_0050	-	water stress/hypersensitive response protein
51	 58.81	0	44724..46250	+	508	154149600	-	Mboo_0051	-	hypothetical protein
52	 56.23	0	46377..46769	-	130	154149601	-	Mboo_0052	-	phosphoribosylaminoimidazole carboxylase
53	 60.21	+1	46826..47956	+	376	154149602	-	Mboo_0053	-	aminotransferase, class V
54	 60.39	+1	47953..48414	+	153	154149603	-	Mboo_0054	-	riboflavin synthase
55	 54.05	0	48459..48878	+	139	154149604	-	Mboo_0055	-	riboflavin synthase subunit beta
56	 56.32	0	48875..50014	+	379	154149605	-	Mboo_0056	-	aspartate aminotransferase
57	 56.72	0	50211..51647	+	478	154149606	-	Mboo_0057	-	major facilitator transporter
58	 54.98	0	51669..52532	-	287	154149607	-	Mboo_0058	-	methyltransferase type 11
59	 54.36	0	52587..53780	-	397	154149608	-	Mboo_0059	-	hypothetical protein
60	 53.93	0	53777..54475	-	232	154149609	-	Mboo_0060	-	ABC transporter related
61	 52.02	0	54480..55640	-	386	154149610	-	Mboo_0061	-	hypothetical protein
62	 53.36	0	55641..56309	-	222	154149611	-	Mboo_0062	-	hypothetical protein
63	 59.75	0	56578..57936	+	452	154149612	-	Mboo_0063	-	tryptophan synthase subunit beta
64	 59.93	0	57953..59050	+	365	154149613	-	Mboo_0064	-	ATP-NAD/AcoX kinase
65	 58.04	0	59086..59676	-	196	154149614	-	Mboo_0065	-	GPR1/FUN34/yaaH family protein
66	 58.14	0	59744..61642	-	632	154149615	-	Mboo_0066	-	acetate--CoA ligase
67	 58.22	0	61883..62770	+	295	154149616	-	Mboo_0067	-	ADP-ribosylation/crystallin J1
68	 56.94	0	62879..63865	+	328	154149617	-	Mboo_0068	-	N-acetyl-gamma-glutamyl-phosphate reductase
69	 54.93	0	63883..64359	+	158	154149618	-	Mboo_0069	-	signal transduction protein
70	 58.98	0	64402..65559	+	385	154149619	-	Mboo_0070	-	arginine biosynthesis bifunctional protein ArgJ
71	 56.05	0	65556..66431	+	291	154149620	-	Mboo_0071	-	acetylglutamate kinase
72	 49.88	-1	66506..66910	+	134	154149621	-	Mboo_0072	-	thioredoxin domain-containing protein
73	 55.05	0	67132..67992	+	286	154149622	-	Mboo_0073	-	cytochrome c biogenesis protein, transmembrane region
74	 51.59	0	68066..68443	-	125	154149623	-	Mboo_0074	-	chorismate mutase
75	 56.65	0	68478..69116	+	212	154149624	-	Mboo_0075	-	peptidase M50
76	 57.14	0	69145..69753	-	202	154149625	-	Mboo_0076	-	NADPH-dependent FMN reductase
77	 56.78	0	69750..70376	-	208	154149626	-	Mboo_0077	-	NADPH-dependent FMN reductase
78	 53.19	0	70547..70954	-	135	154149627	-	Mboo_0078	-	carboxymuconolactone decarboxylase
79	 51.94	0	70951..71079	-	42	154149628	-	Mboo_0079	-	desulfoferrodoxin Dfx domain-containing protein
80	 57.59	0	71569..72174	+	201	154149629	-	Mboo_0080	-	NADPH-dependent FMN reductase
81	 61.69	+1	72197..72859	-	220	154149630	-	Mboo_0081	-	DNA repair protein RadC
82	 56.35	0	73044..73547	+	167	154149631	-	Mboo_0082	-	rubrerythrin
83	 59.09	0	73615..74907	-	430	154149632	-	Mboo_0083	-	LamG domain-containing protein
84	 57.14	0	75022..76176	+	384	154149633	-	Mboo_0084	-	glutaredoxin
85	 60.20	+1	76738..78207	-	489	154149634	-	Mboo_0085	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
86	 63.72	+1	78204..79832	-	542	154149635	-	Mboo_0086	-	succinate dehydrogenase flavoprotein subunit
87	 58.30	0	79894..81291	+	465	154149636	-	Mboo_0087	-	aspartate kinase
88	 58.01	0	81288..82280	+	330	154149637	-	Mboo_0088	-	phosphoribosylformylglycinamidine cyclo-ligase
89	 54.69	0	82330..82755	+	141	154149638	-	Mboo_0089	-	hypothetical protein
90	 59.81	0	82797..83336	-	179	154149639	-	Mboo_0090	-	ZPR1-related zinc finger protein
91	 52.03	0	83341..83709	-	122	154149640	-	Mboo_0091	-	hypothetical protein
92	 58.28	0	83802..84314	-	170	154149641	-	Mboo_0092	-	PUA domain-containing protein
93	 50.65	0	84470..84700	+	76	154149642	-	Mboo_0093	-	like-Sm ribonucleoprotein, core
94	 54.10	0	84712..84894	+	60	154149643	-	Mboo_0094	-	50S ribosomal protein L37e
95	 57.23	0	84905..86335	+	476	154149644	-	Mboo_0095	-	amidophosphoribosyltransferase
96	 56.93	0	86435..87112	+	225	154149645	-	Mboo_0096	-	methyltransferase type 12
97	 56.44	0	87498..87947	+	149	154149646	-	Mboo_0097	-	thioredoxin
98	 66.67	+2	88008..88307	-	99	154149647	-	Mboo_0098	-	hypothetical protein
99	 56.91	0	88395..88958	-	187	154149648	-	Mboo_0099	-	hypothetical protein
100	 62.37	+1	89083..90642	+	519	154149649	-	Mboo_0100	-	AMP-dependent synthetase and ligase
55.15	MEAN

4.87	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.