IslandPath Analysis: Pediococcus pentosaceus ATCC 25745



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 37.46   STD DEV: 3.43
Pediococcus pentosaceus ATCC 25745, complete genome - 1..1832387
1755 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 39.45	0	50..1390	+	446	116491819	-	PEPE_0001	-	chromosomal replication initiator protein DnaA
2	 35.44	0	1568..2707	+	379	116491820	-	PEPE_0002	-	DNA polymerase III, beta subunit
3	 36.84	0	2928..3155	+	75	116491821	-	PEPE_0003	-	S4-like RNA binding protein
4	 39.29	0	3155..4279	+	374	116491822	recF	PEPE_0004	-	recombination protein F
5	 40.16	0	4284..6230	+	648	116491823	-	PEPE_0005	-	DNA gyrase subunit B
6	 41.31	+1	6279..8810	+	843	116491824	-	PEPE_0006	-	DNA gyrase subunit A
7	 39.65	0	9057..9341	+	94	116491825	-	PEPE_0007	-	SSU ribosomal protein S6P
8	 41.48	+1	9377..9904	+	175	116491826	-	PEPE_0008	-	single-stranded DNA-binding protein
9	 42.62	+1	9928..10164	+	78	116491827	-	PEPE_0009	-	SSU ribosomal protein S18P
10	 40.93	+1	10367..12367	+	666	116491828	-	PEPE_0010	-	signal protein
11	 40.18	0	12373..12825	+	150	116491829	-	PEPE_0011	-	50S ribosomal protein L9P
12	 40.99	+1	12874..14271	+	465	116491830	-	PEPE_0012	-	primary replicative DNA helicase
13	 36.50	0	14364..15563	+	399	116491831	-	PEPE_0013	-	major facilitator superfamily permease
14	 39.30	0	15587..15955	-	122	116491832	-	PEPE_0014	-	hypothetical protein
15	 43.72	+1	16199..16930	+	243	116491833	-	PEPE_0015	-	permease
16	 38.65	0	17257..18741	+	494	116491834	-	PEPE_0016	-	ABC transporter ATPase
17	 40.48	0	18825..19328	+	167	116491835	-	PEPE_0017	-	transcriptional regulator
18	 36.06	0	19331..20395	+	354	116491836	-	PEPE_0018	-	peptide ABC transporter permease
19	 37.02	0	20399..21076	+	225	116491837	-	PEPE_0019	-	peptide ABC transporter ATPase
20	 38.05	0	21247..21819	+	190	116491838	-	PEPE_0020	-	XRE family transcriptional regulator
21	 38.48	0	21867..23051	-	394	116491839	-	PEPE_0021	-	acetyltransferase
22	 32.26	-1	23066..23251	-	61	116491840	-	PEPE_0022	-	hypothetical protein
23	 39.40	0	23258..24493	-	411	116491841	-	PEPE_0023	-	cellobiose-specific PTS system IIC component
24	 40.62	0	24750..25106	-	118	116491842	-	PEPE_0024	-	transcriptional regulator
25	 39.52	0	25243..26082	+	279	116491843	-	PEPE_0025	-	aldo/keto reductase
26	 40.38	0	26103..26897	+	264	116491844	-	PEPE_0026	-	Short-chain alcohol dehydrogenase
27	 41.53	+1	26992..27540	+	182	116491845	-	PEPE_0027	-	flavoprotein
28	 36.61	0	27600..27935	-	111	116491846	-	PEPE_0028	-	ArsR family transcriptional regulator
29	 35.48	0	28001..28606	+	201	116491847	-	PEPE_0029	-	permease, cadmium resistance protein
30	 35.35	0	28732..30021	+	429	116491848	-	PEPE_0030	-	hypothetical protein
31	 36.97	0	30045..30512	+	155	116491849	-	PEPE_0031	-	hypothetical protein
32	 37.07	0	30774..31094	+	106	116491850	-	PEPE_0032	-	membrane transporter
33	 33.80	-1	31114..31752	+	212	116491851	-	PEPE_0033	-	hypothetical protein
34	 39.79	0	31840..33201	-	453	116491852	-	PEPE_0034	-	NAD(FAD)-dependent dehydrogenase
35	 36.71	0	33332..34012	+	226	116491853	-	PEPE_0035	-	C-di-GMP-specific phosphodiesterase
36	 33.55	-1	34048..34506	-	152	116491854	-	PEPE_0036	-	BS_ykrK family protein
37	 40.22	0	34634..35272	+	212	116491855	-	PEPE_0037	-	hemolysin III-like protein
38	 38.39	0	35344..35877	-	177	116491856	-	PEPE_0038	-	acetyltransferase
39	 39.07	0	36064..37335	+	423	116491857	-	PEPE_0039	-	Na+/H+-dicarboxylate symporter
40	 36.34	0	37405..39198	-	597	116491858	-	PEPE_0040	-	glycerophosphoryl diester phosphodiesterase
41	 35.04	0	39323..39556	-	77	116491859	-	PEPE_0041	-	hypothetical protein
42	 38.07	0	39569..40096	-	175	116491860	-	PEPE_0042	-	membrane ancor connecting MutS2 with cell-division Z-ring
43	 42.32	+1	40370..41059	+	229	116491861	-	PEPE_0043	-	hypothetical protein
44	 39.21	0	41074..41754	+	226	116491862	-	PEPE_0044	-	hypothetical protein
45	 40.70	0	41901..43502	+	533	116491863	-	PEPE_0045	-	manganese transporter NRAMP
46	 42.13	+1	43502..43933	+	143	116491864	-	PEPE_0046	-	universal stress protein UspA-like nucleotide-binding protein
47	 41.08	+1	43989..44879	-	296	116491865	-	PEPE_0047	-	diacylglycerol kinase family lipid kinase
48	 41.25	+1	44872..45768	-	298	116491866	-	PEPE_0048	-	fhu operon transcription regulator
49	 41.80	+1	45891..46445	+	184	116491867	-	PEPE_0049	-	galactoside O-acetyltransferase
50	 40.13	0	46445..47194	+	249	116491868	-	PEPE_0050	-	Short-chain alcohol dehydrogenase of unknown specificity
51	 38.18	0	47214..48080	+	288	116491869	-	PEPE_0051	-	aldo/keto reductase
52	 35.08	0	48155..48898	-	247	116491870	-	PEPE_0052	-	ABC transporter permease
53	 38.30	0	48900..49604	-	234	116491871	-	PEPE_0053	-	ABC transporter ATPase
54	 39.42	0	49597..49974	-	125	116491872	-	PEPE_0054	-	GntR family transcriptional regulator
55	 37.67	0	50136..51311	+	391	116491873	-	PEPE_0055	-	Beta-lactamase class A
56	 34.58	0	51333..52217	+	294	116491874	-	PEPE_0056	-	hypothetical protein
57	 40.25	0	52344..53369	+	341	116491875	-	PEPE_0057	-	penicillin V acylase precursor. cysteine peptidase. MEROPS family C59
58	 37.85	0	53451..54203	-	250	116491876	-	PEPE_0058	-	nicotinamide mononucleotide transporter
59	 40.70	0	54772..61776	+	2334	116491877	-	PEPE_0059	-	subtilisin-like serine protease
60	 38.25	0	61866..62231	-	121	116491878	-	PEPE_0060	-	MerR family transcriptional regulator
61	 39.59	0	62378..63400	+	340	116491879	-	PEPE_0061	-	Aryl-alcohol dehydrogenase related enzyme
62	 38.44	0	63976..66345	+	789	116491880	-	PEPE_0062	-	preprotein translocase subunit SecA
63	 34.87	0	66342..67574	+	410	116491881	-	PEPE_0063	-	protein translocase subunit secY/sec61 alpha
64	 36.96	0	67597..69249	+	550	116491882	-	PEPE_0064	-	hypothetical protein
65	 36.43	0	69239..70822	+	527	116491883	-	PEPE_0065	-	hypothetical protein
66	 35.90	0	70815..71633	+	272	116491884	-	PEPE_0066	-	hypothetical protein
67	 36.65	0	71661..73109	+	482	116491885	-	PEPE_0067	-	glycosyltransferase
68	 35.45	0	73099..73947	+	282	116491886	-	PEPE_0068	-	hypothetical protein
69	 37.16	0	74013..74744	+	243	116491887	-	PEPE_0069	-	hypothetical protein
70	 36.84	0	74757..75554	+	265	116491888	-	PEPE_0070	-	hypothetical protein
71	 38.07	0	75938..78595	+	885	116491889	-	PEPE_0071	-	outer membrane protein
72	 33.80	-1	78691..81252	+	853	116491890	-	PEPE_0072	-	hypothetical protein
73	 41.48	+1	81450..82235	+	261	116491891	-	PEPE_0073	-	glucose-1-dehydrogenase
74	 38.10	0	82325..83206	-	293	116491892	-	PEPE_0074	-	transcriptional regulator
75	 40.19	0	83353..84213	+	286	116491893	-	PEPE_0075	-	aldo/keto reductase
76	 42.82	+1	84234..85277	+	347	116491894	-	PEPE_0076	-	threonine dehydrogenase related Zn-dependent dehydrogenase
77	 38.21	0	85747..86238	+	163	116491895	-	PEPE_0077	-	phosphotransferase system IIA component
78	 32.01	-1	86273..87103	+	276	116491896	-	PEPE_0078	-	beta-glucoside operon antiterminator
79	 37.12	0	87130..88581	+	483	116491897	-	PEPE_0079	-	beta-glucosides PTS, EIIBC
80	 33.33	-1	88584..89342	+	252	116491898	-	PEPE_0080	-	hypothetical protein
81	 31.18	-1	89722..90000	-	92	116491899	-	PEPE_0081	-	prebacteriocin
82	 40.44	0	90015..90197	-	60	116491900	-	PEPE_0082	-	prebacteriocin
83	 28.18	-2	90635..91933	+	432	116491901	-	PEPE_0083	-	signal transduction protein
84	 30.92	-1	91952..92698	+	248	116491902	-	PEPE_0084	-	response regulator
85	 32.32	-1	92932..95106	+	724	116491903	-	PEPE_0085	-	bacteriocin-processing peptidase
86	 32.68	-1	95389..96303	-	304	116491904	-	PEPE_0086	-	ABC-type metal ion transport system, periplasmic component/surface adhesin
87	 25.00	-2	96374..96493	-	39	116491905	-	PEPE_0087	-	hypothetical protein
88	 34.10	0	97081..97473	+	130	116491906	-	PEPE_0088	-	hypothetical protein
89	 28.71	-2	97565..98083	-	172	116491907	-	PEPE_0089	-	acetyltransferase
90	 43.87	+1	98313..100124	+	603	116491908	-	PEPE_0090	-	cation transport ATPase
91	 37.96	0	100382..101677	+	431	116491909	-	PEPE_0091	-	cellobiose-specific PTS system IIC component
92	 35.19	0	101661..102524	+	287	116491910	-	PEPE_0092	-	alpha/beta hydrolase superfamily protein
93	 34.56	0	102635..103285	-	216	116491911	-	PEPE_0093	-	hypothetical protein
94	 36.71	0	103637..104524	-	295	116491912	-	PEPE_0094	-	transcriptional regulator
95	 37.03	0	104739..105767	+	342	116491913	-	PEPE_0095	-	dehydrogenase related protein
96	 37.64	0	105791..106765	+	324	116491914	-	PEPE_0096	-	dehydrogenase related protein
97	 40.21	0	106781..107347	+	188	116491915	-	PEPE_0097	-	acetyltransferase
98	 40.90	+1	107735..108685	+	316	116491916	-	PEPE_0099	-	alpha/beta fold family hydrolase
99	 44.03	+1	108687..109649	+	320	116491917	-	PEPE_0100	-	diacylglycerol kinase family protein
100	 41.06	+1	109733..110560	+	275	116491918	-	PEPE_0101	-	alpha/beta hydrolase superfamily protein
37.46	MEAN

3.43	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.