IslandPath Analysis: Nitratiruptor sp. SB155-2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.50   STD DEV: 3.88
Nitratiruptor sp. SB155-2, complete genome - 1..1877931
1843 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 38.96	0	139..1470	+	443	152989754	dnaA	NIS_0001	-	chromosomal replication initiation protein
2	 36.15	0	1642..2706	+	354	152989755	dnaN	NIS_0002	-	DNA polymerase III subunit beta
3	 40.86	0	2775..5099	+	774	152989756	gyrB	NIS_0003	-	DNA gyrase subunit B
4	 35.90	0	5100..6542	+	480	152989757	-	NIS_0004	-	hypothetical protein
5	 37.12	0	6529..6924	+	131	152989758	-	NIS_0005	-	7-cyano-7-deazaguanine reductase
6	 43.86	+1	6917..8512	+	531	152989759	-	NIS_0006	-	succinate dehydrogenase/fumarate reductase, flavoprotein subunit
7	 34.44	-1	8604..10589	+	661	152989760	-	NIS_0007	-	signal transduction sensor histidine kinase
8	 36.79	0	10833..12221	+	462	152989761	-	NIS_0008	-	circadian clock protein KaiC
9	 37.56	0	12224..13453	-	409	152989762	-	NIS_0009	-	amino acid transporter
10	 42.13	0	13545..14249	+	234	152989763	-	NIS_0010	-	succinate dehydrogenase/fumarate reductase, iron-sulfur protein
11	 36.90	0	14249..14920	+	223	152989764	-	NIS_0011	-	transcriptional regulator
12	 39.27	0	14981..15856	+	291	152989765	-	NIS_0012	-	hypothetical protein
13	 37.36	0	15868..16314	+	148	152989766	-	NIS_0013	-	hypothetical protein
14	 36.76	0	16324..16878	+	184	152989767	-	NIS_0014	-	hypothetical protein
15	 39.53	0	16987..18843	+	618	152989768	-	NIS_0015	-	hypothetical protein
16	 40.39	0	18921..19742	+	273	152989769	-	NIS_0016	-	alkyl hydroperoxide reductase
17	 35.52	-1	19746..20156	-	136	152989770	-	NIS_0017	-	hypothetical protein
18	 40.08	0	20233..21225	-	330	152989771	-	NIS_0018	-	sulfate ABC transporter, ATP-binding protein
19	 42.82	0	21222..22001	-	259	152989772	-	NIS_0019	-	molybdenum ABC transporter, permease
20	 43.90	+1	21986..22837	-	283	152989773	-	NIS_0020	-	molybdenum ABC transporter, substrate-binding protein
21	 40.58	0	23350..23832	+	160	152989774	-	NIS_0021	-	hypothetical protein
22	 43.09	0	23822..25420	+	532	152989775	-	NIS_0022	-	oxidoreductase
23	 40.39	0	25428..26192	-	254	152989776	-	NIS_0023	-	metal ion ABC transporter, permease
24	 41.27	0	26180..27061	-	293	152989777	-	NIS_0024	-	metal ion ABC transporter, substrate-binding protein
25	 40.83	0	27072..28298	-	408	152989778	-	NIS_0025	-	hypothetical protein
26	 43.54	+1	28726..29979	-	417	152989779	arsB	NIS_0026	-	arsenic efflux pump protein
27	 43.39	+1	29976..30920	-	314	152989780	-	NIS_0027	-	hypothetical protein
28	 40.69	0	30923..31153	-	76	152989781	-	NIS_0028	-	redox-active disulfide protein 2
29	 42.11	0	31150..31548	-	132	152989782	-	NIS_0029	-	protein tyrosine phosphatase
30	 39.48	0	31545..31853	-	102	152989783	-	NIS_0030	-	ArsR family transcriptional regulator
31	 40.27	0	31963..33129	+	388	152989784	nhaA	NIS_0031	-	NhaA family Na(+)/H(+) antiporter
32	 42.24	0	33347..34693	+	448	152989785	-	NIS_0032	-	sulfur oxidation protein, flavocytochrome c
33	 42.80	0	34750..35478	+	242	152989786	-	NIS_0033	-	sulfur oxidation protein, Rieske-I iron sulfur protein SoxL
34	 41.40	0	35487..35957	+	156	152989787	-	NIS_0034	-	sulfur oxidation protein SoxY
35	 40.00	0	35967..36311	+	114	152989788	-	NIS_0035	-	sulfur oxidation protein SoxZ
36	 39.14	0	36398..36724	+	108	152989789	-	NIS_0036	-	hypothetical protein
37	 36.20	0	36738..38585	-	615	152989790	-	NIS_0037	-	hypothetical protein
38	 34.65	-1	38698..39000	+	100	152989791	-	NIS_0038	-	hypothetical protein
39	 39.07	0	38981..40252	+	423	152989792	-	NIS_0039	-	hypothetical protein
40	 39.90	0	40261..40854	+	197	152989793	-	NIS_0040	-	hypothetical protein
41	 42.21	0	40883..41479	-	198	152989794	-	NIS_0041	-	hypothetical protein
42	 43.51	+1	41489..41989	-	166	152989795	-	NIS_0042	-	hypothetical protein
43	 43.28	0	42135..43712	-	525	152989796	pckA	NIS_0043	-	phosphoenolpyruvate carboxykinase
44	 39.42	0	43777..44121	-	114	152989797	-	NIS_0044	-	ferredoxin-thioredoxin reductase, beta subunit
45	 45.28	+1	44185..44820	-	211	152989798	pcm	NIS_0045	-	protein-L-isoaspartate O-methyltransferase
46	 40.82	0	44817..45524	-	235	152989799	-	NIS_0046	-	hydrolase
47	 42.88	0	45514..46539	-	341	152989800	-	NIS_0047	-	ribonucleotide-diphosphate reductase subunit beta
48	 40.00	0	47442..47831	-	129	152989801	-	NIS_0049	-	hypothetical protein
49	 40.63	0	47913..48734	-	273	152989802	-	NIS_0050	-	oxidoreductase
50	 44.53	+1	48727..49137	-	136	152989803	-	NIS_0051	-	peptide methionine sulfoxide reductase
51	 45.08	+1	49088..49615	-	175	152989804	-	NIS_0052	-	hypothetical protein
52	 44.14	+1	49606..51975	-	789	152989805	nrdA	NIS_0053	-	ribonucleotide-diphosphate reductase subunit alpha
53	 42.75	0	51975..53312	-	445	152989806	-	NIS_0054	-	adenylosuccinate lyase
54	 38.56	0	53499..54398	+	299	152989807	-	NIS_0055	-	ribosomal large subunit pseudouridine synthase D
55	 38.52	0	54560..55504	-	314	152989808	-	NIS_0056	-	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic component
56	 41.85	0	55698..56765	-	355	152989809	-	NIS_0057	-	hypothetical protein
57	 38.01	0	56762..57295	-	177	152989810	-	NIS_0058	-	hypothetical protein
58	 44.18	+1	57292..58056	-	254	152989811	hisF	NIS_0059	-	imidazoleglycerol phosphate synthase, cyclase subunit
59	 39.49	0	58101..58766	+	221	152989812	-	NIS_0060	-	endonuclease III
60	 38.95	0	58836..59672	+	278	152989813	ksgA	NIS_0061	-	dimethyladenosine transferase
61	 42.00	0	59611..61434	+	607	152989814	-	NIS_0062	-	hypothetical protein
62	 42.92	0	61443..62402	+	319	152989815	-	NIS_0063	-	arabinose-5-phosphate isomerase
63	 40.87	0	62399..63181	+	260	152989816	-	NIS_0064	-	RNA pseudouridine synthase
64	 43.43	+1	63150..63545	+	131	152989817	-	NIS_0065	-	hypothetical protein
65	 40.99	0	63538..64713	+	391	152989818	-	NIS_0066	-	recombination factor protein RarA
66	 41.64	0	64849..65955	+	368	152989819	-	NIS_0067	-	hypothetical protein
67	 40.60	0	65989..66456	-	155	152989820	-	NIS_0068	-	hypothetical protein
68	 40.09	0	66453..67118	-	221	152989821	-	NIS_0069	-	hypothetical protein
69	 40.99	0	67115..67558	-	147	152989822	dtd	NIS_0070	-	D-tyrosyl-tRNA deacylase
70	 45.14	+1	67609..68235	+	208	152989823	-	NIS_0071	-	phosphoribosyltransferase
71	 41.09	0	68236..68880	-	214	152989824	-	NIS_0072	-	MarC family multiple antibiotic resistance protein
72	 40.76	0	68987..69592	+	201	152989825	-	NIS_0073	-	TetR family transcriptional regulator
73	 38.92	0	69589..70860	+	423	152989826	-	NIS_0074	-	hypothetical protein
74	 42.01	0	70857..71951	+	364	152989827	-	NIS_0075	-	hypothetical protein
75	 42.67	0	71955..75059	+	1034	152989828	-	NIS_0076	-	RND efflux transporter
76	 42.08	0	75069..75434	+	121	152989829	-	NIS_0077	-	hypothetical protein
77	 38.63	0	75462..76367	+	301	152989830	-	NIS_0078	-	cation efflux system protein
78	 42.88	0	76360..77061	+	233	152989831	-	NIS_0079	-	cytochrome c biogenesis protein
79	 37.43	0	77072..77437	+	121	152989832	-	NIS_0080	-	thioredoxin
80	 41.09	0	77437..77823	+	128	152989833	-	NIS_0081	-	hypothetical protein
81	 43.89	+1	77823..78182	+	119	152989834	-	NIS_0082	-	hypothetical protein
82	 39.84	0	78184..78936	+	250	152989835	-	NIS_0083	-	hypothetical protein
83	 38.21	0	78938..79183	+	81	152989836	-	NIS_0084	-	hypothetical protein
84	 37.97	0	79194..79430	+	78	152989837	-	NIS_0085	-	hypothetical protein
85	 40.55	0	79427..80590	+	387	152989838	-	NIS_0086	-	voltage-gated chloride channel
86	 40.40	0	80718..81764	+	348	152989839	-	NIS_0087	-	hypothetical protein
87	 42.51	0	81768..82181	+	137	152989840	-	NIS_0088	-	hypothetical protein
88	 38.33	0	82178..82657	+	159	152989841	-	NIS_0089	-	hypothetical protein
89	 37.32	0	82635..83738	+	367	152989842	-	NIS_0090	-	hypothetical protein
90	 35.12	-1	83719..84165	+	148	152989843	-	NIS_0091	-	hypothetical protein
91	 36.53	0	84165..85259	+	364	152989844	-	NIS_0092	-	hypothetical protein
92	 42.37	0	85261..85581	+	106	152989845	-	NIS_0093	-	hypothetical protein
93	 42.42	0	85598..85828	+	76	152989846	feoA	NIS_0094	-	ferrous iron transport protein A
94	 42.24	0	85816..87936	+	706	152989847	feoB	NIS_0095	-	ferrous iron transport protein B
95	 39.45	0	87933..89159	-	408	152989848	-	NIS_0096	-	nitrous oxidase accessory protein NosD
96	 39.93	0	89282..89857	-	191	152989849	-	NIS_0097	-	hypothetical protein
97	 39.03	0	89850..90551	-	233	152989850	-	NIS_0098	-	hypothetical protein
98	 44.51	+1	90548..91540	-	330	152989851	purM	NIS_0099	-	phosphoribosylaminoimidazole synthetase
99	 41.67	0	91876..92715	+	279	152989852	speE	NIS_0100	-	spermidine synthase
100	 41.75	0	92709..93314	+	201	152989853	-	NIS_0101	-	dephospho-CoA kinase
39.50	MEAN

3.88	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.