IslandPathversion 1.0

IslandPath Analysis: Thermosynechococcus elongatus BP-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.12 STD DEV: 3.23
Thermosynechococcus elongatus BP-1, complete genome - 1..2593857
2476 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 60.16	+1	129..1142	+	337	22297545	-	tlr0001	-	putative oxidoreductase
2	 56.17	0	1351..2331	-	326	22297546	-	tll0002	-	serine proteinase
3	 56.50	0	2402..2578	-	58	22297547	-	tsl0003	-	hypothetical protein
4	 48.39	-1	2577..2762	+	61	22297548	-	tsr0004	-	hypothetical protein
5	 54.51	0	2816..4534	+	572	22297549	ureC	tlr0005	-	urease subunit alpha
6	 58.99	+1	4538..5032	+	164	22297550	-	tlr0006	-	hypothetical protein
7	 52.01	0	5430..7640	-	736	22297551	-	tll0007	-	cellulose synthase
8	 53.61	0	7667..8746	-	359	22297552	ycf81	tll0008	-	hypothetical protein
9	 58.15	+1	8796..9758	-	320	22297553	-	tll0009	-	hypothetical protein
10	 55.13	0	9717..10886	+	389	22297554	-	tlr0010	-	ABC transporter ATP-binding protein
11	 56.93	0	10886..11296	+	136	22297555	-	tlr0011	-	hypothetical protein
12	 55.44	0	11299..12438	+	379	22297556	-	tlr0012	-	hypothetical protein
13	 57.70	+1	12457..13638	-	393	22297557	-	tll0013	-	N-acetyl-L-amino acid amidohydrolase
14	 56.12	0	13685..14158	-	157	22297558	-	tll0014	-	hypothetical protein
15	 56.35	0	14162..15625	-	487	22297559	-	tll0015	-	lignostilbene-alpha,beta-dioxygenase
16	 55.83	0	15622..16977	-	451	22297560	-	tll0016	-	hypothetical protein
17	 52.11	0	17096..17308	-	70	22297561	-	tsl0017	-	hypothetical protein
18	 55.49	0	17429..18859	+	476	22297562	-	tlr0018	-	phosphomannose isomerase / guanosine 5'-diphospho-D-mannose pyrophosphorylase
19	 55.78	0	18870..19319	-	149	22297563	-	tll0019	-	hypothetical protein
20	 55.63	0	19371..20294	-	307	22297564	crtE	tll0020	-	geranylgeranyl pyrophosphate synthase
21	 58.16	+1	20305..21150	-	281	22297565	folD	tll0021	-	FolD bifunctional protein
22	 56.55	0	21388..21723	-	111	22297566	-	tll0022	-	hypothetical protein
23	 50.00	-1	21720..21917	-	65	22297567	-	tsl0023	-	hypothetical protein
24	 52.40	0	21994..22638	-	214	22297568	-	tll0024	-	hypothetical protein
25	 51.30	0	22644..23105	-	153	22297569	-	tll0025	-	FUR family transcriptional regulator
26	 48.67	-1	23238..23537	-	99	22297570	-	tll0026	-	hypothetical protein
27	 52.54	0	23700..24683	+	327	22297571	-	tlr0027	-	hypothetical protein
28	 55.66	0	24680..25006	+	108	22297572	-	tlr0028	-	hypothetical protein
29	 52.32	0	25137..26279	+	380	22297573	-	tlr0029	-	adaptive-response sensory kinase
30	 52.19	0	26276..27235	-	319	22297574	-	tll0030	-	hypothetical protein
31	 51.50	0	28791..30485	+	564	22297575	-	tlr0031	-	reverse transcriptase
32	 55.16	0	30580..31596	-	338	22297576	-	tll0032	-	UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase
33	 53.23	0	31799..31984	+	61	22297577	nblA	tsr0033	-	phycobilisome degradation protein
34	 51.36	0	32156..32449	-	97	22297578	-	tsl0034	-	hypothetical protein
35	 54.35	0	32957..33289	+	110	22297579	-	tlr0035	-	hypothetical protein
36	 56.57	0	33336..34058	+	240	22297580	sodB	tlr0036	-	superoxide dismutase
37	 54.94	0	34003..35025	-	340	22297581	-	tll0037	-	phosphate starvation-induced protein
38	 50.57	-1	35035..35208	-	57	22297582	rpsU	tsl0038	-	30S ribosomal protein S21
39	 52.26	0	35212..35565	-	117	22297583	-	tll0039	-	hypothetical protein
40	 51.59	0	35569..35820	-	83	22297584	rpsP	tsl0040	-	30S ribosomal protein S16
41	 56.52	0	35921..36817	+	298	22297585	fabD	tlr0041	-	acyl-carrier-protein S-malonyltransferase
42	 60.22	+1	36814..37449	+	211	22297586	-	tlr0042	-	putative acyltransferase
43	 53.67	0	37446..38468	-	340	22297587	gap1	tll0043	-	glyceraldehyde-3-phosphate dehydrogenase
44	 54.17	0	38491..38826	-	111	22297588	-	tll0044	-	hypothetical protein
45	 54.13	0	38879..40426	-	515	22297589	ndhB	tll0045	-	NAD(P)H-quinone oxidoreductase subunit 2
46	 56.97	0	40601..41497	-	298	22297590	-	tll0046	-	hypothetical protein
47	 52.51	0	41499..41837	-	112	22297591	-	tll0047	-	hypothetical protein
48	 51.08	0	41841..42398	-	185	22297592	fur	tll0048	-	ferric uptake regulation protein
49	 54.87	0	42585..44516	-	643	22297593	-	tll0049	-	penicillin-binding protein
50	 54.20	0	44678..45904	+	408	22297594	tyrS	tlr0050	-	tyrosyl-tRNA synthetase
51	 57.06	0	46286..49024	+	912	22297595	-	tlr0051	-	hypothetical protein
52	 58.92	+1	49029..49751	+	240	22297596	ccdA	tlr0052	-	putative c-type cytochrome biogenesis
53	 53.39	0	50147..50869	+	240	22297597	-	tlr0053	-	branched-chain amino acid ABC transporter ATP-binding protein
54	 54.69	0	50866..51441	-	191	22297598	gmk	tll0054	-	guanylate kinase
55	 54.96	0	51518..52021	+	167	22297599	-	tlr0055	-	biopolymer transport ExbD like
56	 56.39	0	52031..52954	+	307	22297600	era	tlr0056	-	GTP-binding protein Era
57	 52.07	0	52959..53561	+	200	22297601	ureG	tlr0057	-	urease accessory protein G
58	 51.17	0	53598..54584	+	328	22297602	-	tlr0058	-	putative serine protease
59	 56.18	0	54653..55396	+	247	22297603	-	tlr0059	-	hypothetical protein
60	 56.72	0	55378..56664	-	428	22297604	-	tll0060	-	putative DNA repair protein RAD32
61	 56.56	0	56678..58132	-	484	22297605	-	tll0061	-	hypothetical protein
62	 59.24	+1	58122..58700	-	192	22297606	-	tll0062	-	hypothetical protein
63	 56.73	0	58741..58911	-	56	22297607	-	tsl0063	-	putatiave high light-inducible protein
64	 52.92	0	58964..60127	-	387	22297608	-	tll0064	-	putatiave glycosyltransferase
65	 55.76	0	60124..60957	-	277	22297609	thiG	tll0065	-	thiazole synthase
66	 49.57	-1	61076..61543	+	155	22297610	-	tlr0066	-	hypothetical protein
67	 52.89	0	61591..62127	+	178	22297611	ribH	tlr0067	-	riboflavin synthase subunit beta
68	 53.87	0	62148..62444	-	98	22297612	-	tsl0068	-	hypothetical protein
69	 55.13	0	62718..63740	+	340	22297613	asd	tlr0069	-	aspartate-semialdehyde dehydrogenase
70	 54.12	0	63777..64613	-	278	22297614	-	tll0070	-	hypothetical protein
71	 52.21	0	64616..65293	-	225	22297615	-	tll0071	-	hypothetical protein
72	 52.53	0	65298..66485	-	395	22297616	-	tll0072	-	hypothetical protein
73	 55.09	0	66470..67834	-	454	22297617	murD	tll0073	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
74	 55.24	0	67985..68413	+	142	22297618	-	tlr0074	-	hypothetical protein
75	 56.69	0	68437..68907	-	156	22297619	-	tll0075	-	hypothetical protein
76	 56.00	0	68908..70407	-	499	22297620	ycf46	tll0076	-	hypothetical protein
77	 58.43	+1	70404..70901	-	165	22297621	-	tll0077	-	hypothetical protein
78	 49.07	-1	70904..71335	-	143	22297622	-	tll0078	-	hypothetical protein
79	 51.83	0	71398..71889	-	163	22297623	-	tll0079	-	hypothetical protein
80	 56.82	0	71858..72994	-	378	22297624	tgt	tll0080	-	queuine tRNA-ribosyltransferase
81	 56.81	0	73361..73999	+	212	22297625	rplC	tlr0081	-	50S ribosomal protein L3
82	 56.08	0	74016..74648	+	210	22297626	rplD	tlr0082	-	50S ribosomal protein L4
83	 53.80	0	74641..74943	+	100	22297627	rplW	tlr0083	-	50S ribosomal protein L23
84	 57.21	0	74955..75821	+	288	22297628	rplB	tlr0084	-	50S ribosomal protein L2
85	 50.18	-1	75844..76122	+	92	22297629	rps19	tsr0085	-	30S ribosomal protein S19
86	 57.18	0	76153..76521	+	122	22297630	rplV	tlr0086	-	50S ribosomal protein L22
87	 56.90	0	76534..77250	+	238	22297631	rpsC	tlr0087	-	30S ribosomal protein S3
88	 56.94	0	77265..77696	+	143	22297632	rplP	tlr0088	-	50S ribosomal protein L16
89	 48.36	-1	77699..77911	+	70	22297633	rpmC	tsr0089	-	50S ribosomal protein L29
90	 53.41	0	77911..78159	+	82	22297634	rpsQ	tsr0090	-	30S ribosomal protein S17
91	 51.22	0	78172..78540	+	122	22297635	rplN	tlr0091	-	50S ribosomal protein L14
92	 48.59	-1	78540..78893	+	117	22297636	rplX	tlr0092	-	50S ribosomal protein L24
93	 50.92	0	78951..79496	+	181	22297637	rplE	tlr0093	-	50S ribosomal protein L5
94	 55.72	0	79526..79927	+	133	22297638	rpsH	tlr0094	-	30S ribosomal protein S8
95	 53.90	0	79946..80509	+	187	22297639	rplF	tlr0095	-	50S ribosomal protein L6
96	 57.30	0	80510..80872	+	120	22297640	rpl18	tlr0096	-	50S ribosomal protein L18
97	 55.43	0	80884..81408	+	174	22297641	rpsE	tlr0097	-	30S ribosomal protein S5
98	 57.20	0	81422..81886	+	154	22297642	rplO	tlr0098	-	50S ribosomal protein L15
99	 52.56	0	81899..83209	+	436	22297643	secY	tlr0099	-	preprotein translocase subunit SecY
100	 52.89	0	83209..83796	+	195	22297644	-	tlr0100	-	adenylate kinase
54.12	MEAN

3.23	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.