IslandPath Analysis: Bacteroides vulgatus ATCC 8482



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 42.76   STD DEV: 4.99
Bacteroides vulgatus ATCC 8482, complete genome - 1..5163189
4065 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 39.83	0	1..1416	+	471	150002609	dnaA	BVU_0001	-	chromosomal replication initiation protein
2	 38.33	0	1501..2241	-	246	150002610	-	BVU_0002	-	putative oxidoreductase
3	 41.38	0	2585..5131	+	848	150002611	-	BVU_0003	-	putative ribonucleoside reductase
4	 36.70	-1	5224..8196	-	990	150002612	-	BVU_0004	-	hypothetical protein
5	 38.48	0	8358..8726	+	122	150002613	-	BVU_0005	-	dihydroneopterin aldolase
6	 39.68	0	8873..9754	-	293	150002614	-	BVU_0006	-	putative DNA repair photolyase
7	 40.35	0	9842..10867	-	341	150002615	-	BVU_0007	-	glycosyl transferase family protein
8	 43.28	0	10903..12219	-	438	150002616	-	BVU_0008	-	putative Fe-S oxidoreductase
9	 37.99	0	12325..13998	+	557	150002617	-	BVU_0009	-	putative long-chain-fatty-acid-CoA ligase
10	 31.60	-2	14514..15206	+	230	150002618	-	BVU_0010	-	hypothetical protein
11	 38.51	0	15276..15719	-	147	150002619	rplI	BVU_0011	-	50S ribosomal protein L9
12	 38.52	0	15735..16004	-	89	150002620	rpsR	BVU_0012	-	30S ribosomal protein S18
13	 37.39	-1	16007..16351	-	114	150002621	rpsF	BVU_0013	-	30S ribosomal protein S6
14	 40.49	0	16561..17007	+	148	150002622	-	BVU_0014	-	transcriptional regulator
15	 39.63	0	17374..18072	-	232	150002623	-	BVU_0015	-	two-component system response regulator
16	 38.81	0	18074..19642	-	522	150002624	-	BVU_0016	-	two-component system sensor histidine kinase
17	 42.64	0	19905..22064	-	719	150002625	-	BVU_0017	-	elongation factor G
18	 43.41	0	22250..23380	+	376	150002626	-	BVU_0018	-	coproporphyrinogen III oxidase
19	 39.53	0	23753..24994	+	413	150002627	-	BVU_0019	-	hypothetical protein
20	 40.75	0	25013..25834	-	273	150002628	-	BVU_0020	-	putative transposase
21	 38.51	0	25976..27442	+	488	150002629	-	BVU_0021	-	hypothetical protein
22	 34.75	-1	27449..28435	+	328	150002630	-	BVU_0022	-	hypothetical protein
23	 36.04	-1	28488..29114	+	208	150002631	-	BVU_0023	-	RNA polymerase ECF-type sigma factor
24	 34.80	-1	29170..29577	+	135	150002632	-	BVU_0024	-	hypothetical protein
25	 38.83	0	29604..30494	+	296	150002633	-	BVU_0025	-	putative anti-sigma factor
26	 39.57	0	30502..33177	+	891	150002634	-	BVU_0026	-	hypothetical protein
27	 35.85	-1	33184..34215	+	343	150002635	-	BVU_0027	-	hypothetical protein
28	 47.47	0	34247..36184	-	645	150002636	-	BVU_0028	-	sialic acid-specific 9-O-acetylesterase
29	 50.78	+1	36212..38257	-	681	150002637	-	BVU_0029	-	alpha-glycosidase
30	 49.63	+1	38254..40848	-	864	150002638	-	BVU_0030	-	hypothetical protein
31	 48.67	+1	40861..42444	-	527	150002639	-	BVU_0031	-	glycoside hydrolase family protein
32	 49.72	+1	42453..44966	-	837	150002640	-	BVU_0032	-	glycoside hydrolase family protein
33	 47.06	0	45200..49249	+	1349	150002641	-	BVU_0033	-	two-component system sensor histidine kinase/response regulator, hybrid
34	 50.50	+1	49721..51334	-	537	150002642	-	BVU_0034	-	transposase
35	 44.12	0	51403..51912	-	169	150002643	-	BVU_0035	-	hypothetical protein
36	 37.74	-1	51897..52055	-	52	150002644	-	BVU_0036	-	hypothetical protein
37	 52.04	+1	52180..54114	-	644	150002645	-	BVU_0037	-	hypothetical protein
38	 48.70	+1	54129..57200	-	1023	150002646	-	BVU_0038	-	hypothetical protein
39	 48.70	+1	57242..58978	-	578	150002647	-	BVU_0039	-	beta-xylosidase/alpha-L-arabinofuranosidase
40	 47.22	0	59328..60299	-	323	150002648	-	BVU_0040	-	beta-xylosidase/alpha-L-arabinofuranosidase
41	 47.42	0	60312..61433	-	373	150002649	-	BVU_0041	-	beta-xylanase
42	 47.93	+1	61646..62611	+	321	150002650	-	BVU_0042	-	transposase
43	 46.05	0	62782..64275	-	497	150002651	-	BVU_0043	-	putative cation symporter
44	 42.68	0	64603..65394	-	263	150002652	-	BVU_0044	-	beta-glycosidase
45	 40.75	0	65594..66415	+	273	150002653	-	BVU_0045	-	putative transposase
46	 44.78	0	66523..67911	-	462	150002654	-	BVU_0046	-	phosphoglucomutase/phosphomannomutase
47	 40.57	0	67908..68543	-	211	150002655	-	BVU_0047	-	hypothetical protein
48	 41.11	0	68626..69666	-	346	150002656	-	BVU_0048	-	putative exopolyphosphatase-related protein
49	 41.37	0	69716..71668	-	650	150002657	-	BVU_0049	-	competence protein
50	 42.05	0	71682..72335	-	217	150002658	-	BVU_0050	-	ribulose-phosphate 3-epimerase
51	 44.52	0	72411..73706	-	431	150002659	-	BVU_0051	-	hypothetical protein
52	 38.12	0	73709..74251	-	180	150002660	-	BVU_0052	-	putative RNA polymerase ECF-type sigma factor
53	 37.68	-1	74409..75191	+	260	150002661	-	BVU_0053	-	hypothetical protein
54	 42.26	0	75264..76238	-	324	150002662	fmt	BVU_0054	-	methionyl-tRNA formyltransferase
55	 41.32	0	76252..78054	-	600	150002663	-	BVU_0055	-	putative chloride channel protein
56	 42.36	0	78063..78638	-	191	150002664	-	BVU_0056	-	putative translation factor
57	 44.85	0	78805..79968	-	387	150002665	-	BVU_0057	-	N-acetylglucosamine-6-phosphate deacetylase
58	 42.37	0	80059..83235	-	1058	150002666	-	BVU_0058	-	drug efflux protein
59	 44.42	0	83232..84728	-	498	150002667	-	BVU_0059	-	putative outer membrane protein TolC
60	 44.17	0	84706..87786	-	1026	150002668	-	BVU_0060	-	putative cation efflux system
61	 44.76	0	87791..88858	-	355	150002669	-	BVU_0061	-	putative cation efflux system protein
62	 43.88	0	88911..90560	-	549	150002670	-	BVU_0062	-	hypothetical protein
63	 33.93	-1	90563..92074	-	503	150002671	-	BVU_0063	-	hypothetical protein
64	 38.21	0	92076..92978	-	300	150002672	-	BVU_0064	-	signal peptidase I
65	 42.10	0	92987..94903	-	638	150002673	-	BVU_0065	-	hypothetical protein
66	 31.60	-2	95171..96265	-	364	150002674	-	BVU_0066	-	hypothetical protein
67	 33.98	-1	96441..96749	+	102	150002675	-	BVU_0067	-	hypothetical protein
68	 41.41	0	96844..97710	-	288	150002676	-	BVU_0068	-	hypothetical protein
69	 39.14	0	98189..99187	+	332	150002677	-	BVU_0069	-	hypothetical protein
70	 45.46	0	99951..101030	-	359	150002678	-	BVU_0070	-	putative lipoprotein
71	 43.73	0	101327..102115	+	262	150002679	-	BVU_0071	-	hypothetical protein
72	 44.18	0	102098..102982	-	294	150002680	-	BVU_0072	-	lactate dehydrogenase and related dehydrogenase
73	 44.96	0	103089..103871	+	260	150002681	-	BVU_0073	-	DnaJ domain-containing protein
74	 42.89	0	103946..105514	-	522	150002682	-	BVU_0074	-	peptide chain release factor 3
75	 42.66	0	105521..106378	-	285	150002683	-	BVU_0075	-	putative dTDP-4-dehydrorhamnose reductase
76	 37.14	-1	106393..106839	-	148	150002684	-	BVU_0076	-	hypothetical protein
77	 41.36	0	107007..107666	-	219	150002685	-	BVU_0077	-	hypothetical protein
78	 45.24	0	107817..111521	+	1234	150002686	-	BVU_0078	-	phosphoribosylformylglycinamidine synthase
79	 37.04	-1	111599..115615	+	1338	150002687	-	BVU_0079	-	two-component system sensor histidine kinase/response regulator, hybrid
80	 38.25	0	115620..116168	+	182	150002688	-	BVU_0080	-	putative chromate transport protein
81	 39.97	0	116165..116737	+	190	150002689	-	BVU_0081	-	chromate transport protein
82	 44.07	0	117024..118523	-	499	150002690	-	BVU_0082	-	putative secreted protein
83	 44.68	0	118605..121406	+	933	150002691	-	BVU_0083	-	UvrABC SOS-repair system protein excinuclease A
84	 43.02	0	121652..122683	+	343	150002692	-	BVU_0084	-	putative endonuclease/exonuclease/phosphatase family protein
85	 44.00	0	122740..125046	+	768	150002693	-	BVU_0085	-	beta-N-acetylhexosaminidase
86	 39.43	0	125156..125647	-	163	150002694	-	BVU_0086	-	hypothetical protein
87	 35.14	-1	125666..125887	-	73	150002695	-	BVU_0087	-	hypothetical protein
88	 42.00	0	125874..127304	-	476	150002696	-	BVU_0088	-	carbon starvation protein A
89	 44.76	0	127383..129062	+	559	150002697	-	BVU_0089	-	hypothetical protein
90	 40.84	0	129411..130409	-	332	150002698	-	BVU_0090	-	putative DNA-binding protein
91	 30.98	-2	130412..131005	-	197	150002699	-	BVU_0091	-	hypothetical protein
92	 47.09	0	132242..133411	+	389	150002700	-	BVU_0092	-	putative phosphoribosylformylglycinamidine cyclo-ligase
93	 33.69	-1	133392..133670	+	92	150002701	-	BVU_0093	-	hypothetical protein
94	 46.77	0	133654..134769	+	371	150002702	prfA	BVU_0094	-	peptide chain release factor 1
95	 45.18	0	134806..135624	+	272	150002703	-	BVU_0095	-	orotidine 5'-phosphate decarboxylase
96	 42.80	0	135713..136948	+	411	150002704	-	BVU_0096	-	phosphohydrolase
97	 45.24	0	137081..138121	+	346	150002705	-	BVU_0097	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
98	 47.72	0	138130..139512	+	460	150002706	-	BVU_0098	-	bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase
99	 43.36	0	139529..140296	+	255	150002707	-	BVU_0099	-	UDP-N-acetylglucosamine acyltransferase
100	 43.09	0	140359..140922	+	187	150002708	-	BVU_0100	-	hypothetical protein
42.76	MEAN

4.99	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.