IslandPath Analysis: Lactobacillus fermentum IFO 3956



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.54   STD DEV: 5.45
Lactobacillus fermentum IFO 3956, complete genome - 1..2098685
1843 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 53.53	0	1..1317	+	438	184154477	-	LAF_0001	-	chromosomal replication initiation protein DnaA
2	 52.63	0	1482..2621	+	379	184154478	-	LAF_0002	-	DNA-directed DNA polymerase III beta subunit
3	 47.95	0	2843..3061	+	72	184154479	-	LAF_0003	-	hypothetical protein
4	 53.30	0	3071..4192	+	373	184154480	-	LAF_0004	-	DNA replication and repair protein RecF
5	 55.74	0	4192..6141	+	649	184154481	-	LAF_0005	-	DNA gyrase subunit B
6	 55.48	0	6167..8677	+	836	184154482	-	LAF_0006	-	DNA gyrase subunit A
7	 48.64	0	8884..9177	+	97	184154483	-	LAF_0007	-	30S ribosomal protein S6
8	 54.13	0	9218..9943	+	241	184154484	-	LAF_0008	-	single-strand binding protein
9	 54.01	0	9982..10218	+	78	184154485	-	LAF_0009	-	30S ribosomal protein S18
10	 55.65	0	10343..12376	+	677	184154486	-	LAF_0010	-	hypothetical protein
11	 52.54	0	12376..12828	+	150	184154487	-	LAF_0011	-	50S ribosomal protein L9
12	 56.55	0	12873..14276	+	467	184154488	-	LAF_0012	-	replicative DNA helicase
13	 52.64	0	14360..15535	+	391	184154489	-	LAF_0013	-	putative multidrug transport protein
14	 56.76	0	15547..15879	+	110	184154490	-	LAF_0014	-	hypothetical protein
15	 55.23	0	16335..17042	+	235	184154491	-	LAF_0015	-	two-component response regulator
16	 53.17	0	17054..18913	+	619	184154492	-	LAF_0016	-	two-component sensor histidine kinase
17	 54.20	0	18897..20195	+	432	184154493	-	LAF_0017	-	hypothetical protein
18	 52.81	0	20197..20997	+	266	184154494	-	LAF_0018	-	hypothetical protein
19	 58.46	+1	21012..21827	+	271	184154495	-	LAF_0019	-	hypothetical protein
20	 56.76	0	21902..23173	+	423	184154496	-	LAF_0020	-	serine protease
21	 52.92	0	23681..24160	+	159	184154497	-	LAF_0021	-	hypothetical protein
22	 55.16	0	24375..24800	+	141	184154498	-	LAF_0022	-	hypothetical protein
23	 57.16	0	24806..25741	+	311	184154499	-	LAF_0023	-	transcriptional regulator
24	 55.51	0	26121..27464	+	447	184154500	-	LAF_0024	-	putative sugar transport protein
25	 56.88	0	27477..29723	+	748	184154501	-	LAF_0025	-	maltose phosphorylase
26	 62.93	+1	29870..30538	+	222	184154502	-	LAF_0026	-	beta-phosphoglucomutase
27	 50.90	0	30621..31286	-	221	184154503	-	LAF_0027	-	hypothetical protein
28	 59.30	+1	31337..32314	-	325	184154504	-	LAF_0028	-	penicillin acylase
29	 57.05	0	32369..33304	-	311	184154505	-	LAF_0029	-	cell surface hydrolase
30	 57.00	0	33607..34599	-	330	184154506	-	LAF_0030	-	D-lactate dehydrogenase
31	 58.73	+1	34615..35799	-	394	184154507	-	LAF_0031	-	aromatic amino acid aminotransferase
32	 49.35	0	36148..36378	+	76	184154508	-	LAF_0032	-	hypothetical protein
33	 55.64	0	36473..38566	+	697	184154509	-	LAF_0033	-	ATP-dependent Clp protease ATP-binding subunit
34	 49.33	0	38599..38823	-	74	184154510	-	LAF_0034	-	hypothetical protein
35	 54.48	0	38867..40327	+	486	184154511	-	LAF_0035	-	cardiolipin synthase
36	 57.92	0	40810..44547	+	1245	184154512	-	LAF_0036	-	ATP-dependent nuclease subunit B
37	 59.54	+1	44554..48567	+	1337	184154513	-	LAF_0037	-	ATP-dependent nuclease subunit A
38	 56.94	0	48567..49430	+	287	184154514	-	LAF_0038	-	oxidoreductase
39	 58.12	+1	49669..51294	+	541	184154515	-	LAF_0039	-	putative glycerophosphodiester phosphodiesterase
40	 52.94	0	51588..51944	-	118	184154516	-	LAF_0040	-	arsenate reductase
41	 54.30	0	51982..53097	-	371	184154517	-	LAF_0041	-	ABC transporter permease component
42	 56.01	0	53090..53821	-	243	184154518	-	LAF_0042	-	ABC transporter ATP-binding component
43	 55.56	0	53948..54514	+	188	184154519	-	LAF_0043	-	hypothetical protein
44	 55.58	0	55767..57056	+	429	184154520	-	LAF_0044	-	adenylosuccinate synthase
45	 52.65	0	57383..58738	+	451	184154521	-	LAF_0045	-	putative succinic semialdehyde dehydrogenase
46	 55.74	0	59048..59587	+	179	184154522	-	LAF_0046	-	pyrimidine operon regulator
47	 59.70	+1	59706..60437	+	243	184154523	-	LAF_0047	-	orotidine-5'-phosphate decarboxylase
48	 58.69	+1	60437..61063	+	208	184154524	-	LAF_0048	-	orotate phosphoribosyltransferase
49	 39.67	-2	61624..62049	-	141	184154525	-	LAF_0049	-	transposase
50	 46.39	-1	62125..63411	+	428	184154526	-	LAF_0050	-	transposase
51	 55.10	0	64286..65824	+	512	184154527	-	LAF_0051	-	poly(glycerol-phosphate) alpha-glucosyltransferase
52	 59.65	+1	65824..67320	+	498	184154528	-	LAF_0052	-	poly(glycerol-phosphate) alpha-glucosyltransferase
53	 50.30	0	67730..68572	+	280	184154529	-	LAF_0053	-	hypothetical protein
54	 55.31	0	68598..69662	+	354	184154530	-	LAF_0054	-	ABC transporter ATP-binding component
55	 57.41	0	69655..70356	+	233	184154531	-	LAF_0055	-	ABC transporter permease component
56	 60.84	+1	70482..71630	+	382	184154532	-	LAF_0056	-	peptidase
57	 57.21	0	71930..73537	-	535	184154533	-	LAF_0057	-	putative RNA methyltransferase
58	 36.99	-2	73909..74346	+	145	184154534	-	LAF_0058	-	transposase
59	 41.07	-2	74343..75506	+	387	184154535	-	LAF_0059	-	transposase
60	 50.27	0	76377..77669	-	430	184154536	-	LAF_0060	-	D-alanyl transfer protein
61	 50.00	0	77683..77934	-	83	184154537	-	LAF_0061	-	D-alanyl carrier protein
62	 51.59	0	77949..79175	-	408	184154538	-	LAF_0062	-	D-alanyl transfer protein
63	 54.97	0	79175..80704	-	509	184154539	-	LAF_0063	-	D-alanine-activating enzyme
64	 54.32	0	81076..82209	+	377	184154540	-	LAF_0064	-	exonuclease SbcD
65	 58.74	+1	82206..85310	+	1034	184154541	-	LAF_0065	-	exonuclease SbcC
66	 54.89	0	85598..86896	+	432	184154542	-	LAF_0066	-	seryl-tRNA synthase
67	 57.00	0	87382..88395	-	337	184154543	-	LAF_0067	-	tryptophanyl-tRNA synthase
68	 55.18	0	88653..89906	-	417	184154544	-	LAF_0068	-	tyrosyl-tRNA synthase
69	 52.19	0	90572..91828	+	418	184154545	-	LAF_0069	-	glutamine ABC transporter permease component
70	 53.49	0	91832..92575	+	247	184154546	-	LAF_0070	-	glutamine ABC transporter ATP-binding component
71	 53.71	0	93082..94455	+	457	184154547	-	LAF_0071	-	amino acid transport protein
72	 43.17	-1	94779..96029	-	416	184154548	-	LAF_0072	-	transposase
73	 41.94	-1	96108..96560	+	150	184154549	-	LAF_0073	-	transposase
74	 49.17	0	97271..98470	+	399	184154550	-	LAF_0074	-	nucleoside transport protein
75	 57.18	0	99815..100552	+	245	184154551	-	LAF_0075	-	cell division protein GidB
76	 54.17	0	100571..101506	+	311	184154552	-	LAF_0076	-	chromosome partitioning protein ParB
77	 59.38	+1	101490..102353	+	287	184154553	-	LAF_0077	-	chromosome partitioning protein ParB
78	 49.75	0	102366..102566	+	66	184154554	-	LAF_0078	-	hypothetical protein
79	 57.83	0	102582..103679	+	365	184154555	-	LAF_0079	-	GTP-binding protein
80	 56.59	0	103713..104486	+	257	184154556	-	LAF_0080	-	hypothetical protein
81	 57.39	0	104757..105899	+	380	184154557	-	LAF_0081	-	inosine-5'-monophosphate dehydrogenase
82	 50.74	0	106246..107262	-	338	184154558	-	LAF_0082	-	transposase
83	 49.59	0	107553..108653	+	366	184154559	-	LAF_0083	-	transposase
84	 51.50	0	108801..109802	+	333	184154560	-	LAF_0084	-	hypothetical protein
85	 50.45	0	109802..110572	+	256	184154561	-	LAF_0085	-	hypothetical protein
86	 56.32	0	110589..111332	+	247	184154562	-	LAF_0086	-	exopolysaccharide biosynthesis protein
87	 53.57	0	111353..112123	+	256	184154563	-	LAF_0087	-	exopolysaccharide biosynthesis protein
88	 47.10	0	112240..112791	+	183	184154564	-	LAF_0088	-	capsular polysaccharide synthesis protein
89	 35.09	-2	112815..113669	+	284	184154565	-	LAF_0089	-	putative glycosyltransferase
90	 33.83	-2	113686..114498	+	270	184154566	-	LAF_0090	-	hypothetical protein
91	 37.70	-2	114518..115753	+	411	184154567	-	LAF_0091	-	hypothetical protein
92	 37.72	-2	115750..116751	+	333	184154568	-	LAF_0092	-	hypothetical protein
93	 37.86	-2	116768..117871	+	367	184154569	-	LAF_0093	-	hypothetical protein
94	 37.00	-2	117881..118753	+	290	184154570	-	LAF_0094	-	putative glycosyltransferases
95	 35.92	-2	118758..120266	+	502	184154571	-	LAF_0095	-	putative flippase
96	 44.60	-1	120285..121154	+	289	184154572	-	LAF_0096	-	glucose-1-phosphate thymidylyltransferase
97	 44.85	-1	121158..121739	+	193	184154573	-	LAF_0097	-	dTDP-4-dehydrorhamnose 3,5-epimerase
98	 47.97	0	121750..122781	+	343	184154574	-	LAF_0098	-	dTDP-glucose 4,6-dehydratase
99	 46.74	-1	122844..123701	+	285	184154575	-	LAF_0099	-	dTDP-4-dehydrorhamnose reductase
100	 42.83	-1	124005..125225	+	406	184154576	-	LAF_0100	-	transposase
52.54	MEAN

5.45	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.