IslandPath Analysis: Rhodospirillum rubrum ATCC 11170



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.73   STD DEV: 4.27
Rhodospirillum rubrum ATCC 11170, complete genome - 1..4352825
3791 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.56	0	228..1757	+	509	83591341	dnaA	Rru_A0001	-	chromosomal replication initiation protein
2	 64.61	0	1992..3110	+	372	83591342	-	Rru_A0002	-	DNA polymerase III subunit beta
3	 74.82	+2	3170..4297	+	375	83591343	recF	Rru_A0003	-	recombination protein F
4	 64.96	0	4362..6770	+	802	83591344	gyrB	Rru_A0004	-	DNA gyrase subunit B
5	 58.55	-1	7184..7528	+	114	83591345	-	Rru_A0005	-	killer suppression protein HigA, putative
6	 60.80	-1	7515..8657	+	380	83591346	-	Rru_A0006	-	plasmid maintenance system antidote protein
7	 65.79	0	8763..9104	-	113	83591347	-	Rru_A0007	-	hypothetical protein
8	 60.39	-1	9208..9414	-	68	83591348	-	Rru_A0008	-	hypothetical protein
9	 62.37	0	9673..10137	-	154	83591349	-	Rru_A0009	-	PTS IIA-like nitrogen-regulatory protein PtsN
10	 63.87	0	10527..12029	-	500	83591350	-	Rru_A0010	-	RNA polymerase factor sigma-54
11	 67.70	0	12047..12913	-	288	83591351	-	Rru_A0011	-	ABC transporter component
12	 68.21	0	12910..13881	-	323	83591352	-	Rru_A0012	-	hypothetical protein
13	 67.15	0	13878..14702	-	274	83591353	-	Rru_A0013	-	hypothetical protein
14	 69.30	0	14699..15799	-	366	83591354	-	Rru_A0014	-	KpsF/GutQ
15	 64.73	0	16232..16852	-	206	83591355	-	Rru_A0015	-	3'-5' exonuclease
16	 67.35	0	17356..18378	+	340	83591356	-	Rru_A0016	-	3-beta-hydroxy-delta(5)-steroid dehydrogenase
17	 68.55	0	18493..19341	-	282	83591357	-	Rru_A0017	-	undecaprenyl-diphosphatase
18	 68.11	0	19695..21152	+	485	83591358	-	Rru_A0018	-	putative oxidoreductase
19	 65.68	0	21176..25750	+	1524	83591359	-	Rru_A0019	-	glutamate synthase (NADPH) large subunit
20	 63.71	0	25849..26355	-	168	83591360	-	Rru_A0020	-	glutathione peroxidase
21	 68.90	0	26352..26888	-	178	83591361	-	Rru_A0021	-	MarR family transcriptional regulator
22	 63.53	0	27098..27766	+	222	83591362	-	Rru_A0022	-	glutathione S-transferase-like protein
23	 67.18	0	27937..28329	+	130	83591363	-	Rru_A0023	-	hypothetical protein
24	 67.80	0	28454..29599	+	381	83591364	-	Rru_A0024	-	peptidase
25	 61.30	-1	29722..30261	+	179	83591365	-	Rru_A0025	-	hypothetical protein
26	 63.91	0	30276..31619	+	447	83591366	-	Rru_A0026	-	hypothetical protein
27	 67.94	0	31626..32333	+	235	83591367	-	Rru_A0027	-	monofunctional biosynthetic peptidoglycan transglycosylase
28	 61.67	0	32913..33752	-	279	83591368	-	Rru_A0028	-	Beta-lactamase-like
29	 61.77	0	33773..34099	-	108	83591369	-	Rru_A0029	-	hypothetical protein
30	 60.44	-1	34106..34651	-	181	83591370	-	Rru_A0030	-	hypothetical protein
31	 60.67	-1	34821..35720	+	299	83591371	-	Rru_A0031	-	LysR family transcriptional regulator
32	 72.79	+1	35787..37271	-	494	83591372	-	Rru_A0032	-	TPR repeat-containing protein
33	 69.40	0	37268..37780	-	170	83591373	-	Rru_A0033	-	cytochrome C biogenesis protein
34	 65.82	0	37777..38364	-	195	83591374	-	Rru_A0034	-	periplasmic protein thiol-disulfide oxidoreductase DsbE
35	 67.26	0	38390..40405	-	671	83591375	-	Rru_A0035	-	cytochrome c-type biogenesis protein CcmF
36	 65.15	0	40491..40952	-	153	83591376	-	Rru_A0036	-	cytochrome c-type biogenesis protein CcmE
37	 69.23	0	41073..41228	-	51	83591377	-	Rru_A0037	-	Heme exporter protein D (CcmD)
38	 64.31	0	41257..41976	-	239	83591378	-	Rru_A0038	-	cytochrome c-type biogenesis protein CcmC
39	 68.01	0	42142..42810	-	222	83591379	-	Rru_A0039	-	cytochrome c-type biogenesis protein CcmB
40	 70.94	+1	42807..43508	-	233	83591380	-	Rru_A0040	-	cytochrome c biogenesis protein CcmA
41	 67.76	0	43838..44293	-	151	83591381	-	Rru_A0041	-	cytochrome c, class II
42	 69.48	0	44634..45131	+	165	83591382	-	Rru_A0042	-	hypothetical protein
43	 67.52	0	45342..46511	+	389	83591383	-	Rru_A0043	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
44	 53.17	-2	46548..46799	+	83	83591384	-	Rru_A0044	-	acyl carrier protein
45	 64.77	0	46946..48160	+	404	83591385	-	Rru_A0045	-	3-oxoacyl-[acyl-carrier-protein] synthase II
46	 68.43	0	48174..48683	+	169	83591386	-	Rru_A0046	-	hypothetical protein
47	 64.74	0	48770..50377	-	535	83591387	-	Rru_A0047	-	ABC transporter component
48	 64.59	0	50520..51146	-	208	83591388	-	Rru_A0048	-	lysine exporter protein LysE/YggA
49	 73.58	+1	51225..51629	-	134	83591389	-	Rru_A0049	-	biotin/lipoyl attachment
50	 68.38	0	51626..52033	-	135	83591390	-	Rru_A0050	-	hypothetical protein
51	 65.96	0	52046..53599	-	517	83591391	-	Rru_A0051	-	carboxyl transferase
52	 63.05	0	53905..55893	-	662	83591392	-	Rru_A0052	-	biotin carboxylase
53	 63.01	0	55947..57479	-	510	83591393	-	Rru_A0053	-	carboxyl transferase
54	 68.73	0	58117..60054	+	645	83591394	-	Rru_A0054	-	1-deoxy-D-xylulose-5-phosphate synthase
55	 63.00	0	60139..61011	-	290	83591395	-	Rru_A0055	-	VacJ-like lipoprotein
56	 66.35	0	61427..62065	+	212	83591396	-	Rru_A0056	-	toluene tolerance
57	 70.45	+1	62231..64900	-	889	83591397	-	Rru_A0057	-	hypothetical protein
58	 67.37	0	64954..65955	-	333	83591398	-	Rru_A0058	-	dihydrokaempferol 4-reductase
59	 65.97	0	66362..67372	+	336	83591399	-	Rru_A0059	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
60	 63.75	0	67641..68804	+	387	83591400	-	Rru_A0060	-	radical SAM family protein
61	 72.70	+1	68790..69518	-	242	83591401	-	Rru_A0061	-	purine phosphorylases family protein 1
62	 65.60	0	69560..71530	-	656	83591402	-	Rru_A0062	-	terpene synthase, squalene cyclase
63	 71.75	+1	71633..72931	-	432	83591403	-	Rru_A0063	-	amine oxidase
64	 68.99	0	72940..75003	-	687	83591404	-	Rru_A0064	-	squalene-phytoene synthase
65	 69.80	0	75000..75893	-	297	83591405	-	Rru_A0065	-	squalene/phytoene synthase
66	 66.67	0	76073..78394	+	773	83591406	-	Rru_A0066	-	PAS/PAC sensor Signal transduction histidine kinase
67	 74.66	+2	78397..78834	+	145	83591407	-	Rru_A0067	-	hypothetical protein
68	 72.25	+1	78818..79945	-	375	83591408	-	Rru_A0068	-	Alpha/beta hydrolase fold
69	 67.56	0	79942..80952	-	336	83591409	-	Rru_A0069	-	ABC transporter component
70	 63.86	0	81316..82311	-	331	83591410	-	Rru_A0070	-	hypothetical protein
71	 62.12	0	82639..82902	+	87	83591411	-	Rru_A0071	-	hypothetical protein
72	 65.55	0	83004..84884	-	626	83591412	-	Rru_A0072	-	heat shock protein 90
73	 53.81	-2	85297..85677	+	126	83591413	-	Rru_A0073	-	ribosomal subunit interface protein, putative
74	 69.01	0	85794..88994	+	1066	83591414	-	Rru_A0074	-	helicase-like
75	 71.49	+1	88991..89425	+	144	83591415	-	Rru_A0075	-	RNA-binding S4
76	 64.91	0	89581..90036	+	151	83591416	-	Rru_A0076	-	hypothetical protein
77	 53.39	-2	90214..90552	+	112	83591417	-	Rru_A0077	-	4Fe-4S ferredoxin, iron-sulfur binding
78	 64.13	0	90639..90914	+	91	83591418	-	Rru_A0078	-	hypothetical protein
79	 59.64	-1	91210..91707	+	165	83591419	-	Rru_A0079	-	CarD family transcriptional regulator
80	 67.95	0	91792..92880	-	362	83591420	-	Rru_A0080	-	chemotaxis sensory transducer
81	 65.47	0	93164..94252	-	362	83591421	-	Rru_A0081	-	chemotaxis sensory transducer
82	 67.22	0	95041..96120	-	359	83591422	-	Rru_A0082	-	chemotaxis sensory transducer
83	 70.91	+1	96304..97128	+	274	83591423	-	Rru_A0083	-	nuclease, SNase-like
84	 66.25	0	97229..98185	+	318	83591424	-	Rru_A0084	-	prolyl aminopeptidase
85	 61.01	-1	98274..99635	+	453	83591425	-	Rru_A0085	-	response regulator receiver modulated diguanylate cyclase
86	 66.89	0	99635..100087	+	150	83591426	-	Rru_A0086	-	hypothetical protein
87	 72.95	+1	100089..101330	+	413	83591427	-	Rru_A0087	-	hypothetical protein
88	 66.57	0	101509..102531	+	340	83591428	-	Rru_A0088	-	zinc-containing alcohol dehydrogenase superfamily protein
89	 68.62	0	102652..104541	+	629	83591429	-	Rru_A0089	-	ATP-dependent DNA helicase RecQ
90	 68.31	0	104817..105059	+	80	83591430	-	Rru_A0090	-	prevent-host-death protein
91	 67.59	0	105063..105497	+	144	83591431	-	Rru_A0091	-	PilT protein-like
92	 65.96	0	105873..107150	+	425	83591432	-	Rru_A0092	-	extracellular solute-binding protein
93	 61.38	-1	107196..108065	+	289	83591433	-	Rru_A0093	-	binding-protein dependent transport system inner membrane protein
94	 63.15	0	108062..109000	+	312	83591434	-	Rru_A0094	-	binding-protein dependent transport system inner membrane protein
95	 67.65	0	109007..110125	+	372	83591435	-	Rru_A0095	-	ABC transporter component
96	 69.98	0	110136..111101	-	321	83591436	-	Rru_A0096	-	secretion protein HlyD
97	 67.38	0	111258..111680	-	140	83591437	-	Rru_A0097	-	class I peptide chain release factor
98	 69.06	0	111737..112948	-	403	83591438	-	Rru_A0098	-	cystathionine gamma-synthase
99	 65.11	0	113029..115020	-	663	83591439	-	Rru_A0099	-	Serine phosphatase
100	 58.26	-1	115035..115379	-	114	83591440	-	Rru_A0100	-	hypothetical protein
65.73	MEAN

4.27	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.