IslandPath Analysis: Methanocorpusculum labreanum Z



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.85   STD DEV: 4.60
Methanocorpusculum labreanum Z, complete genome - 1..1804962
1739 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 50.47	0	531..1808	+	425	124484830	-	Mlab_0001	-	ORC complex protein Cdc6/Orc1
2	 52.44	0	1811..2302	+	163	124484831	-	Mlab_0002	-	AsnC family transcriptional regulator
3	 54.47	0	2316..3479	+	387	124484832	-	Mlab_0003	-	aminotransferase
4	 53.25	0	3537..4952	+	471	124484833	-	Mlab_0004	-	DNA polymerase II small subunit
5	 51.27	0	5064..7148	+	694	124484834	hppA	Mlab_0005	-	membrane-bound proton-translocating pyrophosphatase
6	 48.48	0	7241..7570	-	109	124484835	-	Mlab_0006	-	hypothetical protein
7	 47.59	0	7707..8141	+	144	124484836	-	Mlab_0007	-	hypothetical protein
8	 46.79	0	8393..8875	-	160	124484837	-	Mlab_0008	-	NADH-ubiquinone oxidoreductase, chain 49kDa
9	 53.51	0	8915..10168	+	417	124484838	-	Mlab_0009	-	hypothetical protein
10	 46.62	0	10248..11060	-	270	124484839	-	Mlab_0010	-	hypothetical protein
11	 49.21	0	11177..12001	-	274	124484840	-	Mlab_0011	-	hypothetical protein
12	 53.49	0	12111..12983	-	290	124484841	-	Mlab_0012	-	coenzyme F420-reducing hydrogenase subunit beta
13	 52.08	0	13004..13915	-	303	124484842	-	Mlab_0013	-	coenzyme F420-reducing hydrogenase, gamma subunit
14	 48.65	0	13919..14401	-	160	124484843	-	Mlab_0014	-	coenzyme F420-reducing hydrogenase, delta subunit
15	 52.92	0	14411..15778	-	455	124484844	-	Mlab_0015	-	coenzyme F420-reducing hydrogenase, alpha subunit
16	 48.25	0	16202..17227	-	341	124484845	-	Mlab_0016	-	hypothetical protein
17	 51.82	0	17224..19068	-	614	124484846	-	Mlab_0017	-	aIF-2BII family translation initiation factor
18	 51.82	0	19260..20195	-	311	124484847	-	Mlab_0018	-	GTP cyclohydrolase
19	 49.57	0	20260..21300	+	346	124484848	-	Mlab_0019	-	hypothetical protein
20	 53.91	0	21302..22783	-	493	124484849	-	Mlab_0020	-	hypothetical protein
21	 46.48	0	22870..24018	-	382	124484850	-	Mlab_0021	-	hypothetical protein
22	 48.38	0	24279..24956	+	225	124484851	-	Mlab_0022	-	reduced coenzyme F420:NADP oxidoreductase
23	 54.07	0	25122..26621	-	499	124484852	-	Mlab_0023	-	hypothetical protein
24	 53.45	0	26611..27291	-	226	124484853	-	Mlab_0024	-	hypothetical protein
25	 55.56	+1	27436..28929	+	497	124484854	-	Mlab_0025	-	Rossmann fold nucleotide-binding protein-like protein
26	 56.74	+1	28941..30884	+	647	124484855	-	Mlab_0026	-	hypothetical protein
27	 56.64	+1	30886..31653	+	255	124484856	-	Mlab_0027	-	hypothetical protein
28	 37.13	-2	32175..32912	+	245	124484857	-	Mlab_0028	-	hypothetical protein
29	 49.30	0	33106..33744	-	212	124484858	-	Mlab_0029	-	serine/arginine repetitive matrix 2
30	 44.10	-1	34606..34893	-	95	124484859	-	Mlab_0030	-	hypothetical protein
31	 47.22	0	35027..35386	-	119	124484860	-	Mlab_0031	-	hypothetical protein
32	 49.34	0	35450..36055	-	201	124484861	-	Mlab_0032	-	hypothetical protein
33	 30.47	-2	36164..38395	-	743	124484862	-	Mlab_0033	-	hypothetical protein
34	 54.36	0	38665..39558	-	297	124484863	-	Mlab_0034	-	methionine synthase
35	 48.33	0	39670..40149	+	159	124484864	-	Mlab_0035	-	hypothetical protein
36	 51.19	0	40489..40908	+	139	124484865	-	Mlab_0036	-	hypothetical protein
37	 51.21	0	40908..41114	+	68	124484866	-	Mlab_0037	-	hypothetical protein
38	 48.42	0	41119..41403	-	94	124484867	-	Mlab_0038	-	hypothetical protein
39	 55.74	+1	41414..42703	-	429	124484868	aspC	Mlab_0039	-	aspartyl-tRNA synthetase
40	 52.36	0	42766..43590	-	274	124484869	-	Mlab_0040	-	hypothetical protein
41	 51.51	0	43744..45333	+	529	124484870	-	Mlab_0041	-	hypothetical protein
42	 51.62	0	45385..46341	+	318	124484871	-	Mlab_0042	-	dihydrodipicolinate synthase
43	 53.70	0	46338..47147	+	269	124484872	-	Mlab_0043	-	hypothetical protein
44	 55.19	0	47144..48067	+	307	124484873	-	Mlab_0044	-	hypothetical protein
45	 53.37	0	48061..48684	+	207	124484874	-	Mlab_0045	-	hypothetical protein
46	 51.03	0	48751..49479	+	242	124484875	-	Mlab_0046	-	hypothetical protein
47	 52.55	0	49502..49756	-	84	124484876	-	Mlab_0047	-	uroporphyrin-III C-methyltransferase
48	 55.74	+1	49753..50283	-	176	124484877	-	Mlab_0048	-	pyruvate ferredoxin oxidoreductase, gamma subunit
49	 55.38	0	50284..51408	-	374	124484878	-	Mlab_0049	-	hypothetical protein
50	 54.21	0	51405..52295	-	296	124484879	-	Mlab_0050	-	aminotransferase class-III
51	 46.85	0	52454..53341	-	295	124484880	-	Mlab_0051	-	porphobilinogen synthase
52	 46.06	-1	53444..54331	-	295	124484881	-	Mlab_0052	-	hypothetical protein
53	 47.20	0	54390..55247	+	285	124484882	-	Mlab_0053	-	hypothetical protein
54	 50.62	0	55254..56213	+	319	124484883	-	Mlab_0054	-	hypothetical protein
55	 49.64	0	56210..56902	-	230	124484884	-	Mlab_0055	-	hypothetical protein
56	 54.68	0	56903..58087	-	394	124484885	-	Mlab_0056	-	aconitase subunit 1
57	 52.78	0	58106..59344	-	412	124484886	-	Mlab_0057	-	hypothetical protein
58	 53.48	0	59341..59886	-	181	124484887	-	Mlab_0058	-	hypothetical protein
59	 53.15	0	59889..61094	-	401	124484888	-	Mlab_0059	-	DNA-directed DNA polymerase
60	 52.00	0	61098..61472	-	124	124484889	-	Mlab_0060	-	hypothetical protein
61	 51.53	0	61507..62424	-	305	124484890	-	Mlab_0061	-	adenosylcobinamide-phosphate synthase
62	 52.43	0	62406..62960	-	184	124484891	-	Mlab_0062	-	hypothetical protein
63	 46.11	-1	62967..63146	-	59	124484892	-	Mlab_0063	-	hypothetical protein
64	 53.41	0	63150..64160	-	336	124484893	-	Mlab_0064	-	adenylosuccinate synthetase
65	 47.20	0	64657..66921	+	754	124484894	-	Mlab_0065	-	hypothetical protein
66	 39.73	-2	68129..69457	-	442	124484895	-	Mlab_0066	-	hypothetical protein
67	 52.64	0	70267..71784	+	505	124484896	-	Mlab_0067	-	thymidine phosphorylase
68	 47.59	0	71809..72993	+	394	124484897	-	Mlab_0068	-	hypothetical protein
69	 48.54	0	73047..74993	+	648	124484898	-	Mlab_0069	-	hypothetical protein
70	 45.69	-1	74997..75425	-	142	124484899	-	Mlab_0070	-	hypothetical protein
71	 50.00	0	75571..76056	+	161	124484900	-	Mlab_0071	-	XRE family transcriptional regulator
72	 52.77	0	76186..77034	-	282	124484901	-	Mlab_0072	-	hypothetical protein
73	 48.85	0	77034..77729	-	231	124484902	-	Mlab_0073	-	Fe-S protein-like protein
74	 48.41	0	77784..79010	+	408	124484903	-	Mlab_0074	-	hypothetical protein
75	 46.76	0	78999..79430	-	143	124484904	-	Mlab_0075	-	dCTP deaminase
76	 52.03	0	79696..80679	+	327	124484905	-	Mlab_0076	-	methylenetetrahydromethanopterin reductase
77	 51.26	0	81003..81878	+	291	124484906	-	Mlab_0077	-	pyridoxine biosynthesis protein
78	 49.12	0	81881..82450	+	189	124484907	-	Mlab_0078	-	hypothetical protein
79	 53.50	0	82568..83410	-	280	124484908	-	Mlab_0079	-	F420-dependent methylenetetrahydromethanopterin dehydrogenase
80	 43.95	-1	83722..84126	+	134	124484909	-	Mlab_0080	-	putative transcriptional regulator
81	 51.40	0	84892..85893	+	333	124484910	rpl3p	Mlab_0081	-	50S ribosomal protein L3P
82	 53.49	0	85902..86645	+	247	124484911	rpl4lp	Mlab_0082	-	50S ribosomal protein L4P
83	 44.98	-1	86648..86896	+	82	124484912	-	Mlab_0083	-	50S ribosomal protein L23P
84	 54.22	0	86907..87629	+	240	124484913	rpl2p	Mlab_0084	-	50S ribosomal protein L2P
85	 50.12	0	87636..88046	+	136	124484914	rps19p	Mlab_0085	-	30S ribosomal protein S19P
86	 52.95	0	88052..88525	+	157	124484915	-	Mlab_0086	-	50S ribosomal protein L22P
87	 52.44	0	88528..89223	+	231	124484916	-	Mlab_0087	-	SSU ribosomal protein S3P
88	 49.25	0	89226..89426	+	66	124484917	-	Mlab_0088	-	50S ribosomal protein L29P
89	 47.40	0	89743..90069	+	108	124484918	-	Mlab_0090	-	SSU ribosomal protein S17P
90	 50.88	0	90066..90464	+	132	124484919	rpl14p	Mlab_0091	-	50S ribosomal protein L14P
91	 47.81	0	90474..90839	+	121	124484920	rpl24p	Mlab_0092	-	50S ribosomal protein L24P
92	 48.89	0	90839..91558	+	239	124484921	-	Mlab_0093	-	30S ribosomal protein S4e
93	 49.03	0	91555..92070	+	171	124484922	rpl5p	Mlab_0094	-	50S ribosomal protein L5P
94	 52.05	0	92072..92242	+	56	124484923	-	Mlab_0095	-	SSU ribosomal protein S14P
95	 50.64	0	92256..92648	+	130	124484924	-	Mlab_0096	-	30S ribosomal protein S8P
96	 48.38	0	92661..93185	+	174	124484925	-	Mlab_0097	-	50S ribosomal protein L6P
97	 54.25	0	93187..93621	+	144	124484926	rpl32e	Mlab_0098	-	50S ribosomal protein L32e
98	 54.75	0	93614..94066	+	150	124484927	rpl19e	Mlab_0099	-	50S ribosomal protein L19e
99	 51.43	0	94070..94594	+	174	124484928	rpl18p	Mlab_0100	-	50S ribosomal protein L18P
100	 49.51	0	94596..95213	+	205	124484929	rps5p	Mlab_0101	-	30S ribosomal protein S5P
50.85	MEAN

4.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.