IslandPath Analysis: Methanocaldococcus jannaschii DSM 2661



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 29.26   STD DEV: 3.43
Methanocaldococcus jannaschii DSM 2661 extrachromosomal, complete genome - 1..58407
45 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 25.07	-1	302..1051	+	249	10954493	-	MJECL01	-	hypothetical protein
2	 27.44	0	1082..1471	-	129	10954494	-	MJECL02	-	hypothetical protein
3	 32.42	0	1374..1700	-	108	10954495	-	MJECL03	-	hypothetical protein
4	 28.94	0	1934..3253	+	439	10954496	-	MJECL04	-	putative ATPase
5	 30.69	0	3265..3453	+	62	10954489	-	MJECL05	-	hypothetical protein
6	 35.90	+1	3784..4134	-	116	10954497	-	MJECL06	-	hypothetical protein
7	 30.85	0	4558..5805	-	415	10954498	-	MJECL07	-	hypothetical protein
8	 30.97	0	5829..7391	-	520	10954499	-	MJECL08	-	putative ATPase
9	 25.08	-1	7780..8106	+	108	10954500	-	MJECL09	-	hypothetical protein
10	 29.09	0	8128..8787	+	219	10954501	-	MJECL10	-	hypothetical protein
11	 34.78	+1	8818..9162	+	114	10954502	-	MJECL11	-	putative ATPase
12	 30.44	0	9165..9890	+	241	10954503	-	MJECL12	-	hypothetical protein
13	 29.08	0	10678..12486	+	602	10954504	-	MJECL13	-	putative cell division control protein
14	 25.26	-1	12701..13939	-	412	18656943	-	MJECL13a	-	hypothetical protein
15	 28.25	0	14486..15430	+	314	10954505	-	MJECL14	-	hypothetical protein
16	 27.32	0	15447..16544	+	365	10954506	-	MJECL15	-	putative ATP-binding protein
17	 27.23	0	16602..16814	+	70	10954490	-	MJECL16	-	hypothetical protein
18	 30.35	0	20873..21508	+	211	10954507	-	MJECL18	-	hypothetical protein
19	 29.33	0	21498..22022	+	174	10954508	-	MJECL19	-	hypothetical protein
20	 36.49	+2	22850..23293	+	147	10954509	-	MJECL20	-	hypothetical protein
21	 27.64	0	23295..24593	-	432	10954510	-	MJECL21	-	hypothetical protein
22	 29.17	0	24851..25090	-	79	10954511	-	MJECL22	-	hypothetical protein
23	 30.03	0	25133..27616	-	827	10954512	-	MJECL23	-	hypothetical protein
24	 30.38	0	28069..28848	+	259	10954513	-	MJECL24	-	putative chromosome partitioning protein
25	 30.63	0	28838..29170	+	110	10954514	-	MJECL25	-	hypothetical protein
26	 27.62	0	29175..30206	-	343	10954515	-	MJECL26	-	putative ATP-binding protein
27	 33.74	+1	30568..31056	-	162	10954516	-	MJECL27	-	hypothetical protein
28	 28.59	0	31531..35349	-	1272	10954517	-	MJECL28	-	hypothetical protein
29	 35.78	+1	36217..36420	-	67	10954491	-	MJECL29	-	histone
30	 24.24	-1	37148..37609	-	153	10954518	-	MJECL30	-	hypothetical protein
31	 21.74	-2	37596..37802	-	68	10954492	-	MJECL31	-	hypothetical protein
32	 27.41	0	38825..40141	-	438	10954519	-	MJECL32	-	hypothetical protein
33	 28.69	0	40122..41348	-	408	10954520	-	MJECL33	-	hypothetical protein
34	 32.66	0	42228..43115	-	295	10954521	-	MJECL34	-	hypothetical protein
35	 30.85	0	43112..45004	-	630	10954522	-	MJECL35	-	hypothetical protein
36	 35.81	+1	45391..45834	-	147	10954523	-	MJECL36	-	hypothetical protein
37	 26.33	0	46155..46868	+	237	10954524	-	MJECL37	-	hypothetical protein
38	 26.28	0	47194..47973	-	259	10954525	-	MJECL38	-	hypothetical protein
39	 25.09	-1	48326..49381	-	351	10954526	-	MJECL39	-	hypothetical protein
40	 30.78	0	49453..52581	-	1042	10954527	hsdR	MJECL40	-	type I restriction enzyme subunit R
41	 27.64	0	52610..53908	-	432	10954528	hsdS	MJECL41	-	type I restriction enzyme subunit S
42	 26.79	0	53910..54245	-	111	50434640	-	MJECL41.1N	-	hypothetical protein
43	 33.15	+1	54268..55944	-	558	10954529	-	MJECL42	-	type I restriction system protein M
44	 24.50	-1	56184..57338	-	384	10954530	-	MJECL43	-	hypothetical protein
45	 26.00	0	57338..58333	-	331	10954531	-	MJECL44	-	hypothetical protein
29.26	MEAN

3.43	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.