IslandPath Analysis: Rhodopseudomonas palustris BisB5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.98   STD DEV: 3.46
Rhodopseudomonas palustris BisB5, complete genome - 1..4892717
4397 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.61	0	649..2067	+	472	91974483	dnaA	RPD_0001	-	chromosomal replication initiation protein
2	 64.61	0	2329..3447	+	372	91974484	-	RPD_0002	-	DNA polymerase III subunit beta
3	 71.86	+1	3622..4758	+	378	91974485	recF	RPD_0003	-	recombination protein F
4	 66.30	0	4985..7426	+	813	91974486	gyrB	RPD_0004	-	DNA gyrase subunit B
5	 61.22	-1	7691..8461	-	256	91974487	-	RPD_0005	-	hypothetical protein
6	 63.64	0	8475..8738	-	87	91974488	-	RPD_0006	-	hypothetical protein
7	 58.77	-1	8751..9092	-	113	91974489	-	RPD_0007	-	hypothetical protein
8	 60.29	-1	9267..10505	-	412	91974490	-	RPD_0008	-	divergent AAA region
9	 66.47	0	10961..11476	+	171	91974491	-	RPD_0009	-	hypothetical protein
10	 66.09	0	11481..12173	+	230	91974492	-	RPD_0010	-	hypothetical protein
11	 55.88	-2	12201..13025	-	274	91974493	-	RPD_0011	-	hypothetical protein
12	 60.54	-1	13025..15799	-	924	91974494	-	RPD_0012	-	helicase-like protein
13	 54.56	-2	15807..18746	-	979	91974495	-	RPD_0013	-	DNA methylase containing a Zn-ribbon
14	 63.06	0	18758..19339	-	193	91974496	-	RPD_0014	-	hypothetical protein
15	 61.72	0	19336..22488	-	1050	91974497	-	RPD_0015	-	hypothetical protein
16	 63.47	0	22544..22762	-	72	91974498	-	RPD_0016	-	hypothetical protein
17	 66.49	0	23030..23581	+	183	91974499	-	RPD_0017	-	hypothetical protein
18	 65.90	0	23793..24572	+	259	91974500	-	RPD_0018	-	metallophosphoesterase
19	 65.85	0	24633..25244	+	203	91974501	-	RPD_0019	-	hypothetical protein
20	 66.57	0	25241..27334	+	697	91974502	-	RPD_0020	-	AAA ATPase, central region
21	 60.78	-1	27411..27716	+	101	91974503	-	RPD_0021	-	hypothetical protein
22	 61.93	0	27805..28395	+	196	91974504	-	RPD_0022	-	hypothetical protein
23	 64.55	0	28823..29248	+	141	91974505	-	RPD_0023	-	hypothetical protein
24	 57.83	-2	29308..29997	+	229	91974506	-	RPD_0024	-	hypothetical protein
25	 61.32	-1	29997..32429	+	810	91974507	-	RPD_0025	-	integrase catalytic subunit
26	 57.37	-2	32426..33565	+	379	91974508	-	RPD_0026	-	hypothetical protein
27	 65.83	0	33552..35345	+	597	91974509	-	RPD_0027	-	hypothetical protein
28	 62.09	0	35342..37240	+	632	91974510	-	RPD_0028	-	hypothetical protein
29	 59.00	-1	37353..37691	+	112	91974511	-	RPD_0029	-	hypothetical protein
30	 62.18	0	37697..38431	-	244	91974512	-	RPD_0030	-	hypothetical protein
31	 62.27	0	38412..38798	-	128	91974513	-	RPD_0031	-	hypothetical protein
32	 65.97	0	38941..39660	+	239	91974514	-	RPD_0032	-	hypothetical protein
33	 63.24	0	39653..40090	+	145	91974515	-	RPD_0033	-	hypothetical protein
34	 64.33	0	40087..40557	+	156	91974516	-	RPD_0034	-	hypothetical protein
35	 65.64	0	40554..41921	+	455	91974517	-	RPD_0035	-	UBA/THIF-type NAD/FAD binding fold
36	 70.73	+1	42301..44961	+	886	91974518	-	RPD_0036	-	hypothetical protein
37	 68.43	0	44958..48305	+	1115	91974519	-	RPD_0037	-	UvrD/REP helicase
38	 47.70	-2	48319..49446	+	375	91974520	-	RPD_0038	-	hypothetical protein
39	 56.18	-2	49431..49802	-	123	91974521	-	RPD_0039	-	hypothetical protein
40	 64.30	0	50548..51813	-	421	91974522	-	RPD_0040	-	thiolase
41	 62.91	0	51851..53074	-	407	91974523	-	RPD_0041	-	cytochrome P450
42	 63.29	0	53163..55085	-	640	91974524	-	RPD_0042	-	AMP-dependent synthetase and ligase
43	 62.74	0	55237..55872	+	211	91974525	-	RPD_0043	-	regulatory protein, TetR
44	 58.81	-1	56111..56848	-	245	91974526	-	RPD_0044	-	pentapeptide repeat-containing protein
45	 66.15	0	57042..57812	-	256	91974527	-	RPD_0045	-	enoyl-CoA hydratase/isomerase
46	 63.04	0	57862..58605	-	247	91974528	-	RPD_0046	-	regulatory protein GntR, HTH
47	 64.35	0	58602..60155	-	517	91974529	-	RPD_0047	-	AMP-dependent synthetase and ligase
48	 62.21	0	60305..61537	-	410	91974530	-	RPD_0048	-	ABC-type branched-chain amino acid transport systems periplasmic component-like
49	 64.89	0	61605..63122	-	505	91974531	-	RPD_0049	-	betaine-aldehyde dehydrogenase
50	 63.09	0	63145..63843	-	232	91974532	-	RPD_0050	-	ABC transporter related
51	 63.96	0	63836..64612	-	258	91974533	-	RPD_0051	-	ABC transporter related
52	 63.40	0	64609..65649	-	346	91974534	-	RPD_0052	-	inner-membrane translocator
53	 64.27	0	65655..66530	-	291	91974535	-	RPD_0053	-	inner-membrane translocator
54	 63.96	0	66611..67423	-	270	91974536	-	RPD_0054	-	enoyl-CoA hydratase
55	 60.88	-1	67486..67848	-	120	91974537	-	RPD_0055	-	hypothetical protein
56	 62.42	0	68026..69015	+	329	91974538	-	RPD_0056	-	integral membrane protein TerC
57	 64.03	0	69012..69314	+	100	91974539	-	RPD_0057	-	hypothetical protein
58	 65.38	0	69369..69836	+	155	91974540	-	RPD_0058	-	tellurite resistance protein-like
59	 60.52	-1	70113..70730	+	205	91974541	-	RPD_0059	-	hypothetical protein
60	 62.20	0	70717..71097	+	126	91974542	-	RPD_0060	-	regulatory protein, ArsR
61	 62.06	0	71131..71868	+	245	91974543	-	RPD_0061	-	undecaprenyl diphosphate synthase
62	 60.48	-1	71985..73535	+	516	91974544	-	RPD_0062	-	magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase
63	 61.34	-1	73673..74686	+	337	91974545	-	RPD_0063	-	hypothetical protein
64	 57.47	-2	75240..76196	-	318	91974546	-	RPD_0064	-	helix-turn-helix, AraC type
65	 62.70	0	76970..79036	+	688	91974547	-	RPD_0065	-	chemotaxis sensory transducer
66	 61.20	-1	79164..81395	+	743	91974548	-	RPD_0066	-	GGDEF domain-containing protein
67	 66.67	0	82163..83650	-	495	91974549	-	RPD_0067	-	ATP-binding region, ATPase-like
68	 64.47	0	83786..84514	+	242	91974550	-	RPD_0068	-	ribonuclease P protein component
69	 63.24	0	84531..86396	+	621	91974551	-	RPD_0069	-	putative inner membrane protein translocase component YidC
70	 66.21	0	86689..87342	+	217	91974552	-	RPD_0070	-	GTPase EngB
71	 72.36	+2	87339..87707	+	122	91974553	-	RPD_0071	-	hypothetical protein
72	 64.27	0	87857..88816	+	319	91974554	-	RPD_0072	-	acetylglutamate kinase
73	 67.62	0	88816..89970	+	384	91974555	-	RPD_0073	-	peptidoglycan binding domain-containing protein
74	 64.25	0	89967..90668	+	233	91974556	-	RPD_0074	-	pyrimidine 5-nucleotidase
75	 68.32	0	90762..91607	+	281	91974557	dapD	RPD_0075	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
76	 55.21	-2	91810..92097	+	95	91974558	-	RPD_0076	-	hypothetical protein
77	 66.24	0	92115..93281	+	388	91974559	-	RPD_0077	-	succinyl-diaminopimelate desuccinylase
78	 64.80	0	93536..94498	-	320	91974560	-	RPD_0078	-	transposase, IS4
79	 69.51	+1	94698..95435	-	245	91974561	truA	RPD_0079	-	tRNA pseudouridine synthase A
80	 69.35	+1	95609..96541	-	310	91974562	fmt	RPD_0080	-	methionyl-tRNA formyltransferase
81	 62.31	0	96621..97148	-	175	91974563	-	RPD_0081	-	peptide deformylase
82	 66.50	0	97298..98515	+	405	91974564	-	RPD_0082	-	hypothetical protein
83	 67.83	0	98724..100097	+	457	91974565	-	RPD_0083	-	major facilitator transporter
84	 67.13	0	100126..100554	-	142	91974566	-	RPD_0084	-	hypothetical protein
85	 67.66	0	100574..101179	-	201	91974567	recR	RPD_0085	-	recombination protein RecR
86	 67.29	0	101293..101613	-	106	91974568	-	RPD_0086	-	hypothetical protein
87	 67.79	0	101648..103522	-	624	91974569	-	RPD_0087	-	DNA polymerase III subunits gamma and tau
88	 64.81	0	103996..104481	+	161	91974570	-	RPD_0088	-	histidine triad (HIT) protein
89	 66.67	0	104486..105418	+	310	91974571	-	RPD_0089	-	NUDIX hydrolase
90	 67.53	0	105415..106344	+	309	91974572	-	RPD_0090	-	PfkB
91	 64.96	0	106399..107100	-	233	91974573	-	RPD_0091	-	hypothetical protein
92	 71.10	+1	107176..107604	-	142	91974574	-	RPD_0092	-	hypothetical protein
93	 65.10	0	107613..108380	-	255	91974575	-	RPD_0093	-	hydroxyacylglutathione hydrolase
94	 70.07	+1	108557..109321	+	254	91974576	-	RPD_0094	-	methyltransferase type 11
95	 66.25	0	109382..110107	-	241	91974577	-	RPD_0095	-	hypothetical protein
96	 69.97	+1	110600..111478	-	292	91974578	-	RPD_0096	-	HemK family modification methylase
97	 66.11	0	111521..112606	-	361	91974579	prfA	RPD_0097	-	peptide chain release factor 1
98	 67.90	0	112658..114925	-	755	91974580	-	RPD_0098	-	PTSINtr with GAF domain, PtsP
99	 66.19	0	115231..116484	-	417	91974581	-	RPD_0099	-	aspartate kinase
100	 65.62	0	116843..117604	+	253	91974582	-	RPD_0100	-	3-demethylubiquinone-9 3-methyltransferase
64.98	MEAN

3.46	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.