IslandPath Analysis: Photobacterium profundum SS9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 42.37   STD DEV: 3.35
Photobacterium profundum SS9 chromosome 1, complete sequence - 1..4085304
3416 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.16	0	139..591	-	150	54307238	-	PBPRA0001	-	flavodoxin
2	 46.64	+1	746..2113	-	455	54307239	trmE	PBPRA0002	-	tRNA modification GTPase TrmE
3	 45.33	0	2254..3870	-	538	54307240	-	PBPRA0003	-	putative inner membrane protein translocase component YidC
4	 43.42	0	4097..4453	-	118	54307241	rnpA	PBPRA0004	-	ribonuclease P
5	 43.45	0	4752..5522	-	256	54307242	-	PBPRA0005	-	amino acid ABC transporter ATP-binding protein
6	 43.94	0	5519..6244	-	241	54307243	-	PBPRA0006	-	amino acid ABC transporter permease
7	 40.21	0	6296..7051	-	251	54307244	-	PBPRA0007	-	amino acid ABC transporter periplasmic amino acid-binding protein
8	 43.02	0	7364..8788	+	474	54307245	dnaA	PBPRA0008	-	chromosomal replication initiation protein
9	 44.05	0	8790..9890	+	366	54307246	-	PBPRA0009	-	DNA polymerase III subunit beta
10	 43.33	0	9894..10973	+	359	161936342	recF	PBPRA0010	-	recombination protein F
11	 43.84	0	10993..13410	+	805	54307248	gyrB	PBPRA0011	-	DNA gyrase subunit B
12	 46.22	+1	13497..15599	-	700	54307249	-	PBPRA0012	-	putative flagellar biosynthesis protein
13	 45.48	0	15616..16743	-	375	54307250	-	PBPRA0013	-	FlhB flagellar biosynthetic protein
14	 49.74	+2	16740..17519	-	259	54307251	-	PBPRA0014	-	flagellar biosynthetic protein FliR
15	 45.19	0	17523..17792	-	89	54307252	-	PBPRA0015	-	putative flagellar biosynthetic protein
16	 44.44	0	17795..18523	-	242	54307253	fliP	PBPRA0016	-	flagellar biosynthesis protein FliP
17	 42.09	0	18523..18876	-	117	54307254	-	PBPRA0017	-	putative flagellar motor switch protein
18	 42.31	0	18888..19778	-	296	54307255	-	PBPRA0018	-	hypothetical protein
19	 38.03	-1	20484..21356	+	290	54307256	-	PBPRA0019	-	hypothetical protein
20	 46.44	+1	21377..22795	+	472	54307257	-	PBPRA0020	-	putative two-component response regulator
21	 42.90	0	22816..23160	+	114	54307258	-	PBPRA0021	-	FliE-like hook basal body protein
22	 46.05	+1	23174..24856	+	560	54307259	fliF	PBPRA0022	-	flagellar MS-ring protein
23	 44.74	0	24843..25850	+	335	54307260	fliG	PBPRA0023	-	flagellar motor switch protein G
24	 45.85	+1	25868..26554	+	228	54307261	fliH	PBPRA0024	-	flagellar assembly protein H
25	 48.25	+1	26547..27887	+	446	54307262	-	PBPRA0025	-	putative FliI, flagellum-specific ATP synthase
26	 45.43	0	27987..28325	+	112	54307263	-	PBPRA0026	-	hypothetical protein
27	 42.78	0	28357..28737	-	126	54307264	-	PBPRA0027	-	hypothetical protein
28	 41.84	0	28830..29111	-	93	54307265	-	PBPRA0028	-	flagellar protein
29	 46.72	+1	29470..30231	-	253	54307266	-	PBPRA0029	-	hypothetical protein
30	 43.10	0	30287..30706	+	139	54307267	flgB	PBPRA0030	-	flagellar basal body rod protein FlgB
31	 47.00	+1	30712..31128	+	138	54307268	-	PBPRA0031	-	FlgC flagellar basal-body rod protein
32	 45.19	0	31138..31812	+	224	54307269	-	PBPRA0032	-	flagellar basal-body rod modification protein FlgD
33	 46.93	+1	31866..33284	+	472	54307270	-	PBPRA0033	-	flagellar hook protein FlgE
34	 48.71	+1	33299..34033	+	244	54307271	-	PBPRA0034	-	FlgF flagellar basal-body rod protein
35	 46.06	+1	34093..34878	+	261	54307272	-	PBPRA0035	-	putative FlgG flagellar basal-body rod protein
36	 47.82	+1	35533..36657	+	374	54307273	flgI	PBPRA0036	-	flagellar basal body P-ring protein
37	 46.40	+1	36807..37181	+	124	54307274	-	PBPRA0037	-	flagellar protein
38	 49.04	+1	37178..38584	+	468	54307275	-	PBPRA0038	-	flagellar hook-associated protein
39	 44.04	0	38612..39526	+	304	54307276	flgL	PBPRA0039	-	flagellar hook-associated protein FlgL
40	 47.88	+1	39582..40667	+	361	54307277	-	PBPRA0040	-	hypothetical protein
41	 47.31	+1	41029..42309	+	426	54307278	-	PBPRA0041	-	flagellin type B
42	 50.29	+2	42577..44121	+	514	54307279	-	PBPRA0042	-	hypothetical protein
43	 48.28	+1	44142..44549	+	135	54307280	-	PBPRA0043	-	LafC
44	 49.22	+2	44569..44826	+	85	54307281	-	PBPRA0044	-	hypothetical protein
45	 49.80	+2	44839..46113	+	424	54307282	-	PBPRA0045	-	flagellar hook control length protein
46	 45.05	0	46134..46628	+	164	54307283	-	PBPRA0046	-	hypothetical protein
47	 46.96	+1	46640..47395	+	251	54307284	-	PBPRA0047	-	flagellar-specific transcription initiation factor sigma, LafS
48	 40.99	0	47408..48256	+	282	54307285	-	PBPRA0048	-	flagellar motor protein MotA
49	 46.02	+1	48263..49255	+	330	54307286	-	PBPRA0049	-	chemotaxis LafU protein
50	 40.62	0	49573..50670	+	365	54307287	-	PBPRA0050	-	hypothetical protein
51	 41.63	0	50663..51361	+	232	54307288	-	PBPRA0051	-	hypothetical protein
52	 43.46	0	51476..51781	-	101	54307289	-	PBPRA0052	-	hypothetical protein
53	 39.73	0	51829..52266	+	145	54307290	-	PBPRA0053	-	putative 16kDa heat shock protein A
54	 42.21	0	52470..53720	-	416	54307291	avtA	PBPRA0054	-	valine--pyruvate transaminase
55	 44.40	0	54008..56077	-	689	54307292	glyS	PBPRA0055	-	glycyl-tRNA synthetase subunit beta
56	 44.51	0	56087..57052	-	321	54307293	glyQ	PBPRA0056	-	glycyl-tRNA synthetase subunit alpha
57	 43.80	0	57289..58014	+	241	54307294	-	PBPRA0057	-	putative OmpA family protein
58	 44.09	0	58322..58879	+	185	54307295	-	PBPRA0058	-	hypothetical protein
59	 43.18	0	59018..59281	+	87	54307296	-	PBPRA0059	-	NADH dehydrogenase subunit II-like protein
60	 41.37	0	59336..59584	-	82	54307297	-	PBPRA0060	-	hypothetical protein
61	 44.27	0	60065..61006	+	313	54307298	-	PBPRA0061	-	LysR family transcriptional regulator
62	 45.19	0	61412..62482	-	356	54307299	-	PBPRA0062	-	putative zinc-binding alcohol dehydrogenase
63	 47.08	+1	62599..63762	-	387	54307300	fadA	PBPRA0063	-	3-ketoacyl-CoA thiolase
64	 44.94	0	63779..65941	-	720	54307301	fadB	PBPRA0064	-	multifunctional fatty acid oxidation complex subunit alpha
65	 42.58	0	66439..67065	+	208	54307302	-	PBPRA0065	-	hypothetical protein
66	 43.21	0	67096..68553	+	485	54307303	-	PBPRA0066	-	putative potassium uptake protein TrkH
67	 36.95	-1	68563..69087	+	174	54307304	hemG	PBPRA0067	-	protoporphyrinogen oxidase
68	 44.33	0	81181..81744	-	187	54307305	-	PBPRA0078	-	transposase and inactivated derivative
69	 41.40	0	81746..82216	-	156	54307306	-	PBPRA0079	-	transposase and inactivated derivative
70	 41.59	0	82353..83369	+	338	54307307	-	PBPRA0080	-	transposase
71	 44.68	0	83654..84217	-	187	54307308	-	PBPRA0081	-	transposase and inactivated derivative
72	 41.40	0	84219..84689	-	156	54307309	-	PBPRA0082	-	transposase and inactivated derivative
73	 41.79	0	84826..85842	+	338	54307310	-	PBPRA0083	-	transposase
74	 39.20	0	86129..86998	-	289	54307311	-	PBPRA0084	-	DNA-binding transcriptional regulator IlvY
75	 42.96	0	87131..88615	+	494	54307312	-	PBPRA0085	-	ketol-acid reductoisomerase
76	 37.45	-1	88717..88983	-	88	54307313	-	PBPRA0086	-	hypothetical protein
77	 43.34	0	89116..92232	-	1038	54307314	-	PBPRA0087	-	putative multidrug resistance protein
78	 42.50	0	92245..92757	-	170	54307315	-	PBPRA0088	-	hypothetical protein
79	 42.42	0	92772..93332	-	186	54307316	-	PBPRA0089	-	hypothetical protein
80	 39.87	0	93379..94005	-	208	54307317	-	PBPRA0090	-	TetR family transcriptional regulator
81	 41.74	0	94145..96166	+	673	54307318	-	PBPRA0091	-	putative ATP-dependent DNA helicase Rep
82	 47.45	+1	96262..96672	-	136	54307319	-	PBPRA0092	-	putative cytochrome c5
83	 43.40	0	98233..99951	+	572	54307320	-	PBPRA0098	-	putative peptide ABC transporter, ATP-binding protein
84	 43.72	0	100062..101621	+	519	54307321	-	PBPRA0099	-	putative peptide ABC transporter,periplasmic peptide-binding protein
85	 45.60	0	101704..102681	+	325	54307322	-	PBPRA0100	-	putative peptide ABC transporter
86	 44.37	0	102685..103626	+	313	54307323	-	PBPRA0101	-	putative peptide ABC transporter, permease protein
87	 45.83	+1	104006..104389	-	127	54307324	ccrB	PBPRA0103	-	camphor resistance protein CrcB
88	 42.62	0	104704..105984	+	426	54307325	-	PBPRA0104	-	hypothetical protein
89	 41.61	0	106057..106479	+	140	54307326	-	PBPRA0105	-	hypothetical protein
90	 45.61	0	106855..108777	+	640	54307327	-	PBPRA0106	-	thiamine biosynthesis protein ThiC
91	 46.70	+1	108777..110048	+	423	54307328	thiE	PBPRA0107	-	thiamine-phosphate pyrophosphorylase
92	 48.78	+1	110035..110811	+	258	54307329	-	PBPRA0108	-	putative molybdopterin biosynthesis MoeB protein
93	 48.64	+1	111057..111827	+	256	54307330	thiG	PBPRA0109	-	thiazole synthase
94	 45.82	+1	111837..112949	+	370	54307331	thiH	PBPRA0110	-	thiamine biosynthesis protein ThiH
95	 48.21	+1	113086..114900	-	604	54307332	-	PBPRA0111	-	putative aminopeptidase P
96	 46.61	+1	115072..116088	-	338	54307333	-	PBPRA0112	-	LysR family transcriptional regulator
97	 46.11	+1	116135..117355	+	406	54307334	-	PBPRA0113	-	putative multidrug resistance protein
98	 46.62	+1	117455..118357	-	300	54307335	-	PBPRA0114	-	hypothetical protein
99	 45.22	0	118582..120120	+	512	54307336	-	PBPRA0115	-	hypothetical protein
100	 43.00	0	120259..120951	+	230	54307337	-	PBPRA0116	-	putative ubiquinone/menaquinone biosynthesis methlytransferase UbiE
42.37	MEAN

3.35	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.