IslandPath Analysis: Sulfurihydrogenibium sp. YO3AOP1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.73   STD DEV: 3.45
Sulfurihydrogenibium sp. YO3AOP1, complete genome - 1..1838442
1721 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 28.19	-1	129..1508	+	459	188995956	-	SYO3AOP1_0001	-	chromosomal replication initiator protein DnaA
2	 32.67	0	2017..2769	+	250	188995957	-	SYO3AOP1_0003	-	RNA methyltransferase, TrmH family, group 3
3	 34.88	0	2753..4048	+	431	188995958	-	SYO3AOP1_0004	-	3-phosphoshikimate 1-carboxyvinyltransferase
4	 33.17	0	4593..5213	-	206	188995959	-	SYO3AOP1_0005	-	thiamine-phosphate pyrophosphorylase
5	 30.57	0	5366..6415	+	349	188995960	-	SYO3AOP1_0006	-	2-alkenal reductase
6	 27.82	-1	6942..7376	-	144	188995961	-	SYO3AOP1_0007	-	hypothetical protein
7	 29.25	0	7369..7662	-	97	188995962	-	SYO3AOP1_0008	-	DNA polymerase beta domain protein region
8	 36.43	+1	7659..9047	-	462	188995963	-	SYO3AOP1_0009	-	peptidase U62 modulator of DNA gyrase
9	 31.46	0	9060..9539	-	159	188995964	-	SYO3AOP1_0010	-	hypothetical protein
10	 26.58	-1	9746..12604	+	952	188995965	-	SYO3AOP1_0011	-	diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
11	 29.48	0	13141..14127	+	328	188995966	-	SYO3AOP1_0012	-	transposase IS116/IS110/IS902 family protein
12	 31.02	0	14225..15652	-	475	188995967	-	SYO3AOP1_0013	-	flagellar hook-associated protein FlgK
13	 34.02	0	15961..16839	+	292	188995968	-	SYO3AOP1_0014	-	ROK family protein
14	 36.78	+1	16827..17174	-	115	188995969	-	SYO3AOP1_0015	-	6-pyruvoyl tetrahydropterin synthase and hypothetical protein
15	 29.03	0	17178..17711	-	177	188995970	-	SYO3AOP1_0016	-	hypothetical protein
16	 30.92	0	17708..18661	-	317	188995971	-	SYO3AOP1_0017	-	magnesium and cobalt transport protein CorA
17	 28.90	0	18670..19278	-	202	188995972	-	SYO3AOP1_0018	-	chromosome segregation and condensation protein ScpA
18	 30.67	0	19256..20233	-	325	188995973	-	SYO3AOP1_0019	-	tetraacyldisaccharide 4'-kinase
19	 28.54	0	20223..21203	-	326	188995974	-	SYO3AOP1_0020	-	ribonuclease Z
20	 28.05	-1	21207..21869	-	220	188995975	-	SYO3AOP1_0021	-	conserved hypothetical cytosolic protein
21	 30.67	0	21862..23100	-	412	188995976	-	SYO3AOP1_0022	-	DNA methylase N-4/N-6 domain protein
22	 37.14	+1	23093..24064	-	323	188995977	-	SYO3AOP1_0023	-	Inositol phosphatase/fructose-16-bisphosphatase
23	 31.43	0	24052..24576	-	174	188995978	-	SYO3AOP1_0024	-	hypothetical protein
24	 33.69	0	24577..25995	-	472	188995979	-	SYO3AOP1_0025	-	aldolase
25	 33.64	0	28269..29567	-	432	188995980	-	SYO3AOP1_0026	-	amidohydrolase
26	 29.91	0	29567..31114	-	515	188995981	-	SYO3AOP1_0027	-	protein of unknown function DUF1703
27	 35.37	+1	31119..33377	-	752	188995982	-	SYO3AOP1_0028	-	phosphoribosylformylglycinamidine synthase II
28	 29.09	0	33526..33996	+	156	188995983	-	SYO3AOP1_0029	-	NADH dehydrogenase (ubiquinone) 24 kDa subunit
29	 33.65	0	33980..35551	+	523	188995984	-	SYO3AOP1_0030	-	NADH dehydrogenase (quinone)
30	 34.10	0	35561..38563	+	1000	188995985	-	SYO3AOP1_0031	-	formate dehydrogenase, alpha subunit
31	 34.47	0	39141..40022	-	293	188995986	-	SYO3AOP1_0032	-	dihydrodipicolinate synthase
32	 29.55	0	40095..40490	+	131	188995987	-	SYO3AOP1_0033	-	protein of unknown function UPF0079
33	 31.89	0	42392..43990	+	532	188995988	-	SYO3AOP1_0036	-	DNA repair protein RecN
34	 35.50	+1	43978..46740	+	920	188995989	-	SYO3AOP1_0037	-	excinuclease ABC, A subunit
35	 34.19	0	46927..48441	-	504	188995990	-	SYO3AOP1_0038	-	Leucyl aminopeptidase
36	 29.06	0	48851..49318	+	155	188995991	-	SYO3AOP1_0039	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
37	 33.33	0	49334..49558	+	74	188995992	-	SYO3AOP1_0040	-	twin-arginine translocation protein, TatA/E family subunit
38	 25.18	-1	49565..51085	+	506	188995993	-	SYO3AOP1_0041	-	Peptidoglycan-binding domain 1 protein
39	 28.70	0	51078..51617	+	179	188995994	-	SYO3AOP1_0042	-	protein of unknown function DUF882
40	 28.91	0	51618..52001	-	127	188995995	-	SYO3AOP1_0043	-	hypothetical protein
41	 28.90	0	52465..53592	-	375	188995996	-	SYO3AOP1_0044	-	Integrase catalytic region
42	 34.83	0	54004..55074	-	356	188995997	-	SYO3AOP1_0045	-	hypothetical protein
43	 39.30	+2	55106..56395	-	429	188995998	-	SYO3AOP1_0046	-	ammonium transporter
44	 37.46	+1	56420..56758	-	112	188995999	-	SYO3AOP1_0047	-	nitrogen regulatory protein P-II
45	 32.27	0	57029..58472	+	480	188996000	-	SYO3AOP1_0048	-	hypothetical protein
46	 28.01	-1	58482..59063	+	193	188996001	-	SYO3AOP1_0049	-	siroheme synthase
47	 32.67	0	59092..60438	-	448	188996002	-	SYO3AOP1_0050	-	hypothetical protein
48	 34.96	0	60463..61200	-	245	188996003	-	SYO3AOP1_0051	-	uroporphyrin-III C-methyltransferase
49	 29.01	0	61193..61978	-	261	188996004	-	SYO3AOP1_0052	-	Uroporphyrinogen III synthase HEM4
50	 35.20	+1	61968..63944	-	658	188996005	-	SYO3AOP1_0053	-	molybdopterin oxidoreductase
51	 35.53	+1	63941..64714	-	257	188996006	-	SYO3AOP1_0054	-	nitrate ABC transporter, ATPase subunits C and D
52	 32.56	0	64711..65481	-	256	188996007	-	SYO3AOP1_0055	-	nitrate ABC transporter, inner membrane subunit
53	 34.98	0	65484..66701	-	405	188996008	-	SYO3AOP1_0056	-	NO3-/NO2-ABC transporter
54	 28.57	0	66978..67901	+	307	188996009	-	SYO3AOP1_0057	-	general glycosylation pathway protein
55	 28.37	0	68341..70356	-	671	188996010	-	SYO3AOP1_0058	-	Organic solvent tolerance protein
56	 30.78	0	70409..71191	+	260	188996011	-	SYO3AOP1_0059	-	GTP-binding protein HSR1-related
57	 29.38	0	72198..73436	-	412	188996012	-	SYO3AOP1_0061	-	transposase mutator type
58	 31.01	0	74168..75244	+	358	188996013	-	SYO3AOP1_0062	-	efflux transporter, RND family, MFP subunit
59	 30.56	0	75256..76482	+	408	188996014	-	SYO3AOP1_0063	-	outer membrane efflux protein
60	 29.25	0	76562..77419	+	285	188996015	-	SYO3AOP1_0064	-	RNA polymerase, sigma 32 subunit, RpoH
61	 34.27	0	77765..78298	+	177	188996016	-	SYO3AOP1_0065	-	molybdenum cofactor synthesis domain protein
62	 36.52	+1	78774..79118	-	114	188996017	-	SYO3AOP1_0066	-	iron-sulfur cluster assembly accessory protein
63	 34.67	0	79191..80015	-	274	188996018	-	SYO3AOP1_0067	-	signal peptide peptidase SppA, 36K type
64	 33.60	0	80027..81133	-	368	188996019	-	SYO3AOP1_0068	-	glutamate 5-kinase
65	 32.55	0	81134..81895	-	253	188996020	-	SYO3AOP1_0069	-	tRNA (adenine-N(1)-)-methyltransferase
66	 31.81	0	81892..82548	-	218	188996021	-	SYO3AOP1_0070	-	hypothetical protein
67	 27.38	-1	83189..83860	+	223	188996022	-	SYO3AOP1_0071	-	protein of unknown function DUF45
68	 35.47	+1	83938..84825	+	295	188996023	-	SYO3AOP1_0072	-	putative circadian clock protein, KaiC
69	 33.33	0	84830..85492	+	220	188996024	-	SYO3AOP1_0073	-	hypothetical protein
70	 37.17	+1	86473..86889	+	138	188996025	-	SYO3AOP1_0074	-	Nucleoside-diphosphate kinase
71	 26.71	-1	86879..87391	+	170	188996026	-	SYO3AOP1_0075	-	hypothetical protein
72	 29.27	0	87415..87783	+	122	188996027	-	SYO3AOP1_0076	-	putative sensor with HAMP domain
73	 26.03	-1	87789..88706	+	305	188996028	-	SYO3AOP1_0077	-	hypothetical protein
74	 36.39	+1	88719..89078	+	119	188996029	-	SYO3AOP1_0078	-	Roadblock/LC7 family protein
75	 25.72	-1	89106..89801	+	231	188996030	-	SYO3AOP1_0079	-	hypothetical protein
76	 32.58	0	89803..90336	+	177	188996031	-	SYO3AOP1_0080	-	small GTP-binding protein
77	 35.42	+1	91291..91722	-	143	188996032	-	SYO3AOP1_0081	-	UspA domain protein
78	 33.04	0	91727..92743	-	338	188996033	-	SYO3AOP1_0082	-	hypothetical protein
79	 28.32	0	92760..93038	-	92	188996034	-	SYO3AOP1_0083	-	cytochrome c oxidoreductase subunit B
80	 36.00	+1	93056..94294	-	412	188996035	-	SYO3AOP1_0084	-	oxidoreductase molybdopterin binding
81	 32.06	0	94536..95480	-	314	188996036	-	SYO3AOP1_0085	-	thiamine-monophosphate kinase
82	 29.76	0	95491..97029	-	512	188996037	-	SYO3AOP1_0086	-	glycosyl transferase family 39
83	 32.64	0	97344..99074	-	576	188996038	-	SYO3AOP1_0087	-	excinuclease ABC, C subunit
84	 29.54	0	99351..100589	-	412	188996039	-	SYO3AOP1_0088	-	transposase mutator type
85	 32.03	0	101083..101850	-	255	188996040	-	SYO3AOP1_0090	-	hydrolase, TatD family
86	 36.37	+1	101855..103732	-	625	188996041	-	SYO3AOP1_0091	-	ATP-dependent metalloprotease FtsH
87	 32.84	0	103775..105412	-	545	188996042	-	SYO3AOP1_0092	-	transposase
88	 27.15	-1	105494..106867	-	457	188996043	-	SYO3AOP1_0093	-	tRNA(Ile)-lysidine synthetase
89	 34.29	0	106981..107295	-	104	188996044	-	SYO3AOP1_0094	-	ribosomal protein S20
90	 33.33	0	107412..108614	+	400	188996045	-	SYO3AOP1_0095	-	Methionine adenosyltransferase
91	 24.97	-1	109219..110127	-	302	188996046	-	SYO3AOP1_0096	-	ribonuclease BN
92	 29.25	0	110108..110401	-	97	188996047	-	SYO3AOP1_0097	-	hypothetical protein
93	 24.74	-2	110414..110704	-	96	188996048	-	SYO3AOP1_0098	-	metal dependent phosphohydrolase
94	 29.44	0	110701..110931	-	76	188996049	-	SYO3AOP1_0099	-	hypothetical protein
95	 30.99	0	110943..111326	-	127	188996050	-	SYO3AOP1_0100	-	OsmC family protein
96	 30.40	0	111328..112008	-	226	188996051	-	SYO3AOP1_0101	-	Deoxyribonuclease V
97	 29.78	0	113516..114640	-	374	188996052	-	SYO3AOP1_0103	-	rod shape-determining protein RodA
98	 33.06	0	114640..116439	-	599	188996053	-	SYO3AOP1_0104	-	penicillin-binding protein 2
99	 19.14	-2	116426..116911	-	161	188996054	-	SYO3AOP1_0105	-	hypothetical protein
100	 25.83	-1	116908..117693	-	261	188996055	-	SYO3AOP1_0106	-	Rod shape-determining protein MreC
31.73	MEAN

3.45	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.