IslandPath Analysis: Citrobacter koseri ATCC BAA-895



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.94   STD DEV: 6.20
Citrobacter koseri ATCC BAA-895, complete genome - 1..4720462
4980 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 49.28	0	833..2143	+	436	157144297	-	CKO_00001	-	hypothetical protein
2	 51.22	0	2064..2309	+	81	157144298	-	CKO_00002	-	hypothetical protein
3	 50.39	0	2198..3100	+	300	157144299	-	CKO_00003	-	hypothetical protein
4	 52.85	0	3087..3701	+	204	157144300	-	CKO_00004	-	hypothetical protein
5	 56.54	0	3745..5136	-	463	157144301	-	CKO_00005	-	sugar phosphate antiporter
6	 59.37	+1	5281..6609	-	442	157144302	-	CKO_00006	-	regulatory protein UhpC
7	 61.21	+1	6619..8121	-	500	157144303	-	CKO_00007	-	sensory histidine kinase UhpB
8	 61.01	+1	8121..8792	-	223	157144304	-	CKO_00008	-	DNA-binding transcriptional activator UhpA
9	 40.72	-1	8879..9880	-	333	157144305	-	CKO_00009	-	hypothetical protein
10	 42.42	-1	9884..10048	-	54	157144306	-	CKO_00010	-	hypothetical protein
11	 49.83	0	10132..10422	-	96	157144307	-	CKO_00011	-	acetolactate synthase 1 regulatory subunit
12	 56.93	0	10426..12120	-	564	157144309	-	CKO_00013	-	acetolactate synthase catalytic subunit
13	 49.15	0	12104..12691	+	195	157144308	-	CKO_00012	-	hypothetical protein
14	 51.11	0	12839..13018	-	59	157144310	-	CKO_00014	-	hypothetical protein
15	 60.43	+1	13066..13899	+	277	157144311	-	CKO_00015	-	hypothetical protein
16	 56.52	0	13907..14044	+	45	157144312	-	CKO_00016	-	hypothetical protein
17	 60.34	+1	14146..15330	+	394	157144313	-	CKO_00017	-	multidrug resistance protein D
18	 58.54	0	15257..16339	-	360	157144314	-	CKO_00018	-	hypothetical protein
19	 54.02	0	16408..17427	-	339	157144315	-	CKO_00019	-	DNA-binding transcriptional regulator DsdC
20	 57.47	0	17562..18899	+	445	157144316	-	CKO_00020	-	permease DsdX
21	 58.16	0	18917..20245	+	442	157144317	-	CKO_00021	-	D-serine dehydratase
22	 53.79	0	20258..21274	-	338	157144318	-	CKO_00022	-	hypothetical protein
23	 54.55	0	21367..21729	-	120	157144319	-	CKO_00023	-	hypothetical protein
24	 58.91	0	21719..22066	-	115	157144320	-	CKO_00024	-	hypothetical protein
25	 54.62	0	22175..23668	-	497	157144321	-	CKO_00025	-	hypothetical protein
26	 51.93	0	23665..25401	-	578	157144322	-	CKO_00026	-	putative symporter YidK
27	 45.11	-1	25440..26441	+	333	157144323	-	CKO_00027	-	hypothetical protein
28	 55.10	0	26438..27760	-	440	157144324	-	CKO_00028	-	hypothetical protein
29	 55.48	0	27757..29499	-	580	157144325	-	CKO_00029	-	hypothetical protein
30	 54.08	0	29599..30321	+	240	157144326	-	CKO_00030	-	hypothetical protein
31	 55.54	0	30318..31979	-	553	157144327	-	CKO_00031	-	hypothetical protein
32	 57.89	0	32047..32217	+	56	157144328	-	CKO_00032	-	hypothetical protein
33	 50.58	0	32214..32642	-	142	157144329	-	CKO_00033	-	heat shock chaperone IbpB
34	 48.79	0	32755..33168	-	137	157144330	-	CKO_00034	-	heat shock protein IbpA
35	 45.28	-1	33213..33371	+	52	157144331	-	CKO_00035	-	hypothetical protein
36	 40.58	-1	33429..33566	-	45	157144333	-	CKO_00037	-	hypothetical protein
37	 54.05	0	33475..33807	+	110	157144332	-	CKO_00036	-	hypothetical protein
38	 59.18	+1	33809..35077	-	422	157144334	-	CKO_00038	-	hypothetical protein
39	 50.51	0	35371..36249	+	292	157144335	-	CKO_00039	-	hypothetical protein
40	 52.60	0	36257..37045	+	262	157144336	-	CKO_00040	-	hypothetical protein
41	 49.73	0	37210..39471	+	753	157144337	-	CKO_00041	-	hypothetical protein
42	 43.72	-1	39380..39610	-	76	157144339	-	CKO_00043	-	hypothetical protein
43	 45.62	-1	39471..40715	+	414	157144338	-	CKO_00042	-	hypothetical protein
44	 52.89	0	40829..41641	-	270	157144340	-	CKO_00044	-	sugar phosphatase
45	 56.31	0	41853..44267	-	804	157144341	-	CKO_00045	-	DNA gyrase subunit B
46	 55.59	0	44296..45369	-	357	157144342	-	CKO_00046	-	recombination protein F
47	 55.22	0	45369..46469	-	366	157144343	-	CKO_00047	-	DNA polymerase III subunit beta
48	 53.41	0	46474..47808	-	444	157144344	-	CKO_00048	-	hypothetical protein
49	 45.58	-1	48137..48283	-	48	157144345	-	CKO_00049	-	hypothetical protein
50	 55.56	0	48644..49003	+	119	157144346	-	CKO_00050	-	ribonuclease P
51	 54.77	0	49227..50873	+	548	157144347	-	CKO_00051	-	putative inner membrane protein translocase component YidC
52	 59.60	+1	50939..52339	+	466	157144348	-	CKO_00052	-	tRNA modification GTPase TrmE
53	 50.26	0	52329..52523	+	64	157144349	-	CKO_00053	-	hypothetical protein
54	 55.16	0	52520..53692	+	390	157144350	-	CKO_00054	-	multidrug efflux system protein MdtL
55	 54.17	0	53661..54620	+	319	157144351	-	CKO_00055	-	DNA-binding transcriptional regulator YidZ
56	 54.13	0	54915..55520	+	201	157144352	-	CKO_00056	-	hypothetical protein
57	 55.73	0	55561..56127	+	188	157144353	-	CKO_00057	-	hypothetical protein
58	 61.81	+1	56109..56252	-	47	157144354	-	CKO_00058	-	hypothetical protein
59	 55.83	0	56253..57590	-	445	157144355	-	CKO_00059	-	hypothetical protein
60	 53.00	0	57755..58420	+	221	157144356	-	CKO_00060	-	6-phosphogluconate phosphatase
61	 55.10	0	58542..59267	-	241	157144357	-	CKO_00061	-	transcriptional regulator PhoU
62	 52.07	0	59281..60054	-	257	157144358	-	CKO_00062	-	phosphate transporter subunit
63	 56.12	0	60165..61055	-	296	157144359	-	CKO_00063	-	phosphate transporter permease subunit
64	 54.79	0	61055..62014	-	319	157144360	-	CKO_00064	-	phosphate transporter permease subunit
65	 53.03	0	62159..63229	-	356	157144361	-	CKO_00065	-	phosphate transporter subunit
66	 55.68	0	63519..65348	-	609	157144362	-	CKO_00066	-	D-fructose-6-phosphate amidotransferase
67	 54.19	0	65713..67083	-	456	157144363	-	CKO_00067	-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
68	 45.06	-1	67307..67468	+	53	157144364	-	CKO_00068	-	hypothetical protein
69	 53.81	0	67396..67815	-	139	157144365	-	CKO_00069	-	F0F1 ATP synthase subunit epsilon
70	 55.03	0	67836..69218	-	460	157144366	-	CKO_00070	-	F0F1 ATP synthase subunit beta
71	 52.08	0	69245..70108	-	287	157144367	-	CKO_00071	-	F0F1 ATP synthase subunit gamma
72	 54.28	0	70159..71700	-	513	157144369	-	CKO_00073	-	F0F1 ATP synthase subunit alpha
73	 54.22	0	70249..71847	+	532	157144368	-	CKO_00072	-	hypothetical protein
74	 53.00	0	71713..72246	-	177	157144371	-	CKO_00075	-	F0F1 ATP synthase subunit delta
75	 54.55	0	71953..72480	+	175	157144370	-	CKO_00074	-	hypothetical protein
76	 52.65	0	72261..72731	-	156	157144372	-	CKO_00076	-	F0F1 ATP synthase subunit B
77	 54.17	0	72791..73030	-	79	157144373	-	CKO_00077	-	F0F1 ATP synthase subunit C
78	 51.72	0	73078..73893	-	271	157144374	-	CKO_00078	-	F0F1 ATP synthase subunit A
79	 51.71	0	73902..74282	-	126	157144375	-	CKO_00079	-	F0F1 ATP synthase subunit I
80	 54.65	0	74898..75521	-	207	157144376	-	CKO_00080	-	glucose-inhibited division protein B
81	 57.04	0	75624..77513	-	629	157144377	-	CKO_00081	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
82	 50.89	0	77886..78335	-	149	157144378	-	CKO_00082	-	flavodoxin
83	 49.89	0	78424..78882	-	152	157144379	-	CKO_00083	-	DNA-binding transcriptional regulator AsnC
84	 56.51	0	78974..80026	+	350	157144380	-	CKO_00084	-	asparagine synthetase AsnA
85	 56.68	0	80031..81482	-	483	157144381	-	CKO_00085	-	hypothetical protein
86	 54.64	0	81476..83005	-	509	157144382	-	CKO_00086	-	regulatory ATPase RavA
87	 54.25	0	83277..85145	+	622	157144383	-	CKO_00087	-	potassium transport protein Kup
88	 49.83	0	85440..85736	+	98	157144384	-	CKO_00088	-	hypothetical protein
89	 53.32	0	85744..87249	+	501	157144385	-	CKO_00089	-	D-ribose transporter ATP binding protein
90	 56.00	0	87255..88220	+	321	157144386	-	CKO_00090	-	ribose ABC transporter permease protein
91	 54.10	0	88245..89135	+	296	157144387	-	CKO_00091	-	D-ribose transporter subunit RbsB
92	 55.70	0	89276..90205	+	309	157144388	-	CKO_00092	-	ribokinase
93	 53.23	0	90218..91207	+	329	157144389	-	CKO_00093	-	transcriptional repressor RbsR
94	 54.90	0	91173..92600	-	475	157144390	-	CKO_00094	-	hypothetical protein
95	 50.07	0	92612..93316	-	234	157144391	-	CKO_00095	-	hypothetical protein
96	 31.11	-2	93319..93453	+	44	157144392	-	CKO_00096	-	hypothetical protein
97	 49.53	0	99118..99963	-	281	157144394	-	CKO_00103	-	transcriptional regulator HdfR
98	 48.38	0	100070..100408	+	112	157144395	-	CKO_00104	-	hypothetical protein
99	 52.86	0	100435..101955	-	506	157144396	-	CKO_00105	-	hypothetical protein
100	 36.67	-2	101967..102206	+	79	157144397	-	CKO_00106	-	hypothetical protein
52.94	MEAN

6.20	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.