IslandPath Analysis: Synechococcus sp. CC9902



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.52   STD DEV: 5.62
Synechococcus sp. CC9902, complete genome - 1..2234828
2307 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 55.70	0	247..1404	+	385	78183585	-	Syncc9902_0001	-	DNA polymerase III subunit beta
2	 55.07	0	1406..2155	+	249	78183586	-	Syncc9902_0002	-	hypothetical protein
3	 57.06	0	2195..4495	+	766	78183587	-	Syncc9902_0003	-	phosphoribosylformylglycinamidine synthase II
4	 51.86	0	4495..6000	+	501	78183588	-	Syncc9902_0004	-	amidophosphoribosyltransferase
5	 55.35	0	5990..8410	-	806	78183589	-	Syncc9902_0005	-	DNA gyrase/topoisomerase IV, subunit A
6	 50.57	0	8498..9379	-	293	78183590	-	Syncc9902_0006	-	TPR repeat-containing protein
7	 55.52	0	9399..10394	-	331	78183591	-	Syncc9902_0007	-	4Fe-4S cluster binding
8	 57.72	0	10401..11048	+	215	78183592	-	Syncc9902_0008	-	hypothetical protein
9	 54.12	0	11065..11829	+	254	78183593	-	Syncc9902_0009	-	hypothetical protein
10	 54.09	0	11833..12468	+	211	78183594	nusB	Syncc9902_0010	-	transcription antitermination protein NusB
11	 56.47	0	12468..14036	+	522	78183595	-	Syncc9902_0011	-	cell division transporter substrate-binding protein FtsY
12	 56.38	0	14074..15483	+	469	78183596	-	Syncc9902_0012	-	serine phosphatase
13	 55.14	0	15521..16951	+	476	78183597	-	Syncc9902_0013	-	argininosuccinate lyase
14	 65.65	+1	17078..17668	+	196	78183598	-	Syncc9902_0014	-	RNA-binding region RNP-1
15	 57.11	0	17690..18694	-	334	78183599	-	Syncc9902_0015	-	tRNA-dihydrouridine synthase A
16	 53.45	0	18735..19241	+	168	78183600	-	Syncc9902_0016	-	methionine sulfoxide reductase B
17	 59.85	0	19264..20481	+	405	78183601	-	Syncc9902_0017	-	hypothetical protein
18	 57.14	0	20544..20711	-	55	78183602	-	Syncc9902_0018	-	general secretion pathway protein E
19	 56.44	0	20801..21475	+	224	78183603	-	Syncc9902_0019	-	putative heat shock protein GrpE
20	 59.15	0	21475..22605	+	376	78183604	-	Syncc9902_0020	-	heat shock protein DnaJ
21	 58.44	0	22602..22832	+	76	78183605	-	Syncc9902_0021	-	hypothetical protein
22	 59.36	0	22825..23727	+	300	78183606	-	Syncc9902_0022	-	GTPase EngC
23	 58.48	0	23702..24043	-	113	78183607	-	Syncc9902_0023	-	hypothetical protein
24	 57.53	0	24068..24964	-	298	78183608	-	Syncc9902_0024	-	UDP-N-acetylenolpyruvoylglucosamine reductase
25	 57.07	0	24961..26367	-	468	78183609	-	Syncc9902_0025	-	UDP-N-acetylmuramate--alanine ligase
26	 54.19	0	26528..27553	+	341	78183610	-	Syncc9902_0026	-	glyceraldehyde-3-phosphate dehydrogenase, type I
27	 60.64	+1	27609..28604	-	331	78183611	-	Syncc9902_0027	-	thiamine-monophosphate kinase
28	 57.21	0	28601..29710	-	369	78183612	-	Syncc9902_0028	-	putative cyclophilin-type peptidyl-prolyl cis-trans isomerase
29	 54.01	0	29743..30303	+	186	78183613	-	Syncc9902_0029	-	elongation factor P
30	 56.75	0	30303..30776	+	157	78183614	-	Syncc9902_0030	-	Acetyl-CoA biotin carboxyl carrier
31	 59.00	0	30779..31795	-	338	78183615	pdxA	Syncc9902_0031	-	4-hydroxythreonine-4-phosphate dehydrogenase
32	 56.71	0	31873..32796	-	307	78183616	-	Syncc9902_0032	-	hypothetical protein
33	 52.80	0	33001..33411	-	136	78183617	-	Syncc9902_0033	-	HNH nuclease
34	 59.96	0	33579..35174	+	531	78183618	-	Syncc9902_0034	-	DEAD/DEAH box helicase-like
35	 56.78	0	35514..35867	-	117	78183619	-	Syncc9902_0035	-	hypothetical protein
36	 59.18	0	35984..36517	-	177	78183620	-	Syncc9902_0036	-	hypothetical protein
37	 55.89	0	36581..36877	+	98	78183621	-	Syncc9902_0037	-	hypothetical protein
38	 53.41	0	36898..37146	+	82	78183622	-	Syncc9902_0038	-	hypothetical protein
39	 47.98	-1	37279..37476	+	65	78183623	-	Syncc9902_0039	-	hypothetical protein
40	 57.29	0	37604..38797	-	397	78183624	-	Syncc9902_0040	-	soluble hydrogenase small subunit
41	 59.41	0	38827..39915	+	362	78183625	cbiD	Syncc9902_0041	-	cobalt-precorrin-6A synthase
42	 52.11	0	39948..41534	+	528	78183626	guaA	Syncc9902_0042	-	bifunctional GMP synthase/glutamine amidotransferase protein
43	 47.78	-1	41718..42437	+	239	78183627	-	Syncc9902_0043	-	methylase involved in ubiquinone/menaquinone biosynthesis-like
44	 48.10	-1	42577..43260	+	227	78183628	-	Syncc9902_0044	-	hypothetical protein
45	 56.21	0	43319..43930	+	203	78183629	-	Syncc9902_0045	-	hypothetical protein
46	 59.14	0	43940..44311	+	123	78183630	-	Syncc9902_0046	-	hypothetical protein
47	 56.71	0	44315..46162	+	615	78183631	-	Syncc9902_0047	-	peptidoglycan glycosyltransferase
48	 58.14	0	46106..47254	-	382	78183632	-	Syncc9902_0048	-	SqdX
49	 56.39	0	47269..48465	-	398	78183633	-	Syncc9902_0049	-	sulfolipid (UDP-sulfoquinovose) biosynthesis protein
50	 53.45	0	48541..48714	-	57	78183634	-	Syncc9902_0050	-	high light-inducible protein-like
51	 58.03	0	48792..49613	-	273	78183635	thiG	Syncc9902_0051	-	thiazole synthase
52	 52.38	0	49665..50210	+	181	78183636	-	Syncc9902_0052	-	hypothetical protein
53	 48.45	-1	50232..50747	-	171	78183637	-	Syncc9902_0053	-	TPR repeat-containing protein
54	 60.06	0	50757..51104	-	115	78183638	rplT	Syncc9902_0054	-	50S ribosomal protein L20
55	 58.08	0	51158..51355	-	65	78183639	rpmI	Syncc9902_0055	-	50S ribosomal protein L35
56	 61.56	+1	51413..52960	+	515	78183640	-	Syncc9902_0056	-	amidase enhancer
57	 58.18	0	52985..54316	+	443	78183641	-	Syncc9902_0057	-	putative glycosyltransferase
58	 58.84	0	54450..56327	-	625	78183642	-	Syncc9902_0058	-	DNA-directed DNA polymerase
59	 57.70	0	56351..56986	-	211	78183643	-	Syncc9902_0059	-	hypothetical protein
60	 44.15	-1	57130..58395	-	421	78183644	-	Syncc9902_0060	-	peptidase, metallopeptidase
61	 53.58	0	58475..59827	-	450	78183645	clpX	Syncc9902_0061	-	ATP-dependent protease ATP-binding subunit
62	 54.97	0	59916..60539	-	207	78183646	-	Syncc9902_0062	-	peptidase S14, ClpP
63	 56.92	0	60634..61977	-	447	78183647	tig	Syncc9902_0063	-	trigger factor
64	 55.43	0	62146..63168	+	340	78183648	-	Syncc9902_0064	-	aspartate-semialdehyde dehydrogenase, USG-1 related
65	 58.20	0	63168..64076	+	302	78183649	dapA	Syncc9902_0065	-	dihydrodipicolinate synthase
66	 57.89	0	64129..66201	+	690	78183650	-	Syncc9902_0066	-	hypothetical protein
67	 55.51	0	66229..66963	-	244	78183651	-	Syncc9902_0067	-	hypothetical protein
68	 61.13	+1	67000..68805	-	601	78183652	-	Syncc9902_0068	-	aspartate kinase
69	 64.58	+1	68949..69236	+	95	78183653	-	Syncc9902_0069	-	hypothetical protein
70	 34.08	-2	69543..70748	-	401	78183654	-	Syncc9902_0070	-	hypothetical protein
71	 62.56	+1	71064..71258	-	64	78183655	-	Syncc9902_0071	-	aspartate kinase
72	 60.77	+1	71301..72266	-	321	78183656	-	Syncc9902_0072	-	DNA polymerase III subunit delta
73	 63.73	+1	72276..72923	+	215	78183657	-	Syncc9902_0073	-	putative precorrin-8X methylmutase CobH
74	 61.44	+1	72871..73884	-	337	78183658	-	Syncc9902_0074	-	MesJ-like protein
75	 63.77	+1	73918..74676	+	252	78183659	-	Syncc9902_0075	-	hypothetical protein
76	 57.66	0	74715..75125	+	136	78183660	-	Syncc9902_0076	-	hypothetical protein
77	 57.11	0	75197..77236	+	679	78183661	-	Syncc9902_0077	-	excinuclease ABC subunit B
78	 50.09	0	77370..77918	+	182	78183662	-	Syncc9902_0078	-	hypothetical protein
79	 57.68	0	78049..78504	-	151	78183663	-	Syncc9902_0079	-	hypothetical protein
80	 56.81	0	78547..79449	-	300	78183664	-	Syncc9902_0080	-	hypothetical protein
81	 61.37	+1	79456..82173	-	905	78183665	-	Syncc9902_0081	-	DNA mismatch repair protein
82	 45.50	-1	82312..82500	+	62	78183666	-	Syncc9902_0082	-	photosystem II reaction center protein Z
83	 34.79	-2	82945..83631	-	228	78183667	-	Syncc9902_0083	-	glycosyltransferase
84	 35.14	-2	83635..84684	-	349	78183668	-	Syncc9902_0084	-	N-acylneuraminate-9-phosphate synthase
85	 33.22	-2	84690..85556	-	288	78183669	-	Syncc9902_0085	-	dTDP-4-dehydrorhamnose reductase-like
86	 31.24	-2	85623..86480	+	285	78183670	-	Syncc9902_0086	-	hypothetical protein
87	 30.94	-2	86464..87384	+	306	78183671	-	Syncc9902_0087	-	hypothetical protein
88	 30.24	-2	87350..88222	+	290	78183672	-	Syncc9902_0088	-	hypothetical protein
89	 31.43	-2	88215..89054	+	279	78183673	-	Syncc9902_0089	-	hypothetical protein
90	 31.05	-2	89041..89652	+	203	78183674	-	Syncc9902_0090	-	hypothetical protein
91	 33.56	-2	89656..90540	+	294	78183675	-	Syncc9902_0091	-	hypothetical protein
92	 35.19	-2	90537..92585	+	682	78183676	-	Syncc9902_0092	-	glutamate-1-semialdehyde aminotransferase-like
93	 35.65	-2	92586..93320	+	244	78183677	-	Syncc9902_0093	-	hypothetical protein
94	 33.11	-2	93320..94198	+	292	78183678	-	Syncc9902_0094	-	hypothetical protein
95	 34.66	-2	94207..95187	+	326	78183679	-	Syncc9902_0095	-	dehydrogenase and related proteins-like
96	 37.23	-2	95180..96463	+	427	78183680	-	Syncc9902_0096	-	spore coat polysaccharide biosynthesis protein spsC
97	 35.48	-2	96504..97061	+	185	78183681	-	Syncc9902_0097	-	hypothetical protein
98	 32.43	-2	97058..98605	-	515	78183682	-	Syncc9902_0098	-	hypothetical protein
99	 29.36	-2	98602..99657	-	351	78183683	-	Syncc9902_0099	-	capsular polysaccharide biosynthesis protein-like
100	 31.98	-2	99650..101056	-	468	78183684	-	Syncc9902_0100	-	HAD family hydrolase
54.52	MEAN

5.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.