IslandPath Analysis: Bacteroides fragilis YCH46



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 43.19   STD DEV: 5.60
Bacteroides fragilis YCH46, complete genome - 1..5277274
4578 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 41.10	0	67..594	+	175	53711292	-	BF0001	-	tRNA/rRNA methyltransferase
2	 34.15	-1	749..2218	+	489	53711293	-	BF0002	-	putative outer membrane protein TolC
3	 29.94	-2	2211..3182	+	323	53711294	-	BF0003	-	hypothetical protein
4	 33.10	-1	3196..4035	+	279	53711295	-	BF0004	-	putative glycosyltransferase
5	 42.80	0	4069..4533	+	154	53711296	-	BF0005	-	hypothetical protein
6	 34.38	-1	4565..6376	+	603	53711297	-	BF0006	-	hypothetical protein
7	 46.92	0	6388..8190	+	600	53711298	-	BF0007	-	hypothetical protein
8	 35.82	-1	8650..10416	+	588	53711299	-	BF0008	-	hypothetical protein
9	 35.57	-1	10413..11531	+	372	53711300	-	BF0009	-	putative glycosyltransferase
10	 40.51	0	11512..12180	+	222	53711301	-	BF0010	-	putative glycosyltransferase
11	 36.50	-1	12177..13535	+	452	53711302	-	BF0011	-	putative hemolysin secretion protein
12	 37.96	0	13540..15723	+	727	53711303	-	BF0012	-	ABC transporter ATP-binding protein
13	 39.24	0	15840..16415	-	191	53711304	-	BF0013	-	hypothetical protein
14	 39.45	0	16559..18586	+	675	53711305	-	BF0014	-	hypothetical protein
15	 42.76	0	18644..19417	+	257	53711306	-	BF0015	-	putative Fe-S oxidoreductase
16	 38.86	0	19462..19968	+	168	53711307	-	BF0016	-	hypothetical protein
17	 42.81	0	19986..21599	+	537	53711308	-	BF0017	-	arylsulfatase
18	 40.03	0	21703..22329	-	208	53711309	-	BF0018	-	hypothetical protein
19	 43.89	0	22330..24744	-	804	53711310	-	BF0019	-	ferrichrome-iron receptor
20	 43.63	0	24945..26624	-	559	53711311	-	BF0020	-	putative sulfate transporter permease
21	 40.76	0	26885..27463	+	192	53711312	-	BF0021	-	rubrerythrin
22	 45.93	0	27547..29118	-	523	53711313	-	BF0022	-	L-aspartate oxidase
23	 35.84	-1	29226..29624	+	132	53711314	-	BF0023	-	hypothetical protein
24	 45.24	0	29631..30974	+	447	53711315	-	BF0024	-	dihydrolipoamide dehydrogenase
25	 41.65	0	31078..32484	+	468	53711316	-	BF0025	-	D-alanyl-D-alanine carboxypeptidase
26	 47.93	0	32563..34062	-	499	53711317	-	BF0026	-	putative coenzyme A transferase
27	 41.52	0	34099..34428	-	109	53711318	-	BF0027	-	hypothetical protein
28	 46.58	0	34759..36132	+	457	53711319	-	BF0028	-	hypothetical protein
29	 45.24	0	36250..37668	+	472	53711320	-	BF0029	-	alpha-L-fucosidase precursor
30	 46.71	0	37724..39838	+	704	53711321	-	BF0030	-	beta-galactosidase
31	 44.44	0	39972..40142	-	56	53711322	-	BF0031	-	hypothetical protein
32	 38.97	0	40231..41970	-	579	53711323	-	BF0032	-	two-component system response regulator
33	 27.78	-2	42023..42184	-	53	53711324	-	BF0033	-	hypothetical protein
34	 24.75	-2	42573..42770	-	65	53711325	-	BF0034	-	hypothetical protein
35	 33.91	-1	42932..44140	+	402	53711326	-	BF0035	-	hypothetical protein
36	 37.50	-1	44245..44484	+	79	53711327	-	BF0036	-	hypothetical protein
37	 33.43	-1	44603..45670	+	355	53711328	-	BF0037	-	hypothetical protein
38	 32.10	-1	45841..46002	+	53	53711329	-	BF0038	-	hypothetical protein
39	 40.79	0	46174..46401	+	75	53711330	-	BF0039	-	hypothetical protein
40	 41.95	0	46527..46700	-	57	53711331	-	BF0040	-	hypothetical protein
41	 33.60	-1	46866..47984	+	372	53711332	-	BF0041	-	hypothetical protein
42	 40.25	0	48073..48231	+	52	53711333	-	BF0042	-	hypothetical protein
43	 37.90	0	48475..49941	+	488	53711334	-	BF0043	-	hypothetical protein
44	 32.91	-1	50018..50251	+	77	53711335	-	BF0044	-	hypothetical protein
45	 43.07	0	50473..50739	+	88	53711336	-	BF0045	-	hypothetical protein
46	 34.05	-1	50870..51988	+	372	53711337	-	BF0046	-	hypothetical protein
47	 33.91	-1	51985..52854	+	289	53711338	-	BF0047	-	hypothetical protein
48	 38.36	0	52983..53141	+	52	53711339	-	BF0048	-	hypothetical protein
49	 31.91	-2	53185..54240	+	351	53711340	-	BF0049	-	hypothetical protein
50	 36.47	-1	54269..55321	+	350	53711341	-	BF0050	-	hypothetical protein
51	 34.77	-1	55401..56444	+	347	53711342	-	BF0051	-	hypothetical protein
52	 45.71	0	56549..58528	+	659	53711343	-	BF0052	-	hypothetical protein
53	 46.89	0	58678..59577	+	299	53711344	-	BF0053	-	hypothetical protein
54	 40.59	0	59577..60458	+	293	53711345	-	BF0054	-	cell division protein FtsX
55	 43.68	0	60559..60732	+	57	53711346	-	BF0055	-	hypothetical protein
56	 42.57	0	60739..61539	+	266	53711347	-	BF0056	-	putative bacitracin resistance protein
57	 47.01	0	61547..62248	+	233	53711348	-	BF0057	-	tRNA pseudouridine synthase B
58	 43.34	0	62297..63355	+	352	53711349	-	BF0058	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
59	 45.24	0	63355..63816	+	153	53711350	-	BF0059	-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine
60	 44.62	0	63796..63990	-	64	53711351	-	BF0060	-	hypothetical protein
61	 45.55	0	64199..65491	+	430	53711352	-	BF0061	-	S-adenosylmethionine synthetase
62	 44.22	0	65623..66219	+	198	53711353	-	BF0062	-	putative lysine decarboxylase
63	 39.35	0	66216..67046	+	276	53711354	-	BF0063	-	hypothetical protein
64	 41.77	0	67306..67803	+	165	53711355	-	BF0064	-	hypothetical protein
65	 41.67	0	67951..68274	+	107	53711356	rnpA	BF0065	-	ribonuclease P
66	 43.24	0	68271..68492	+	73	53711357	-	BF0066	-	hypothetical protein
67	 42.92	0	68499..69134	+	211	53711358	-	BF0067	-	TatD-related DNase
68	 43.77	0	69202..70494	+	430	53711359	-	BF0068	-	tyrosyl-tRNA synthetase
69	 45.92	0	70607..73879	-	1090	53711360	-	BF0069	-	putative Tricorn-like protease
70	 45.03	0	74440..76020	+	526	53711361	-	BF0070	-	arylsulfatase
71	 46.03	0	76144..76986	+	280	53711362	-	BF0071	-	5-keto-4-deoxyuronate isomerase
72	 48.61	0	77053..77844	+	263	53711363	-	BF0072	-	gluconate 5-dehydrogenase
73	 48.84	+1	77871..79115	+	414	53711364	-	BF0073	-	hypothetical protein
74	 52.58	+1	79149..80078	-	309	53711365	-	BF0074	-	putative iron-sulfur cluster-binding protein
75	 50.57	+1	80078..80692	-	204	53711366	-	BF0075	-	polysaccharide deacetylase
76	 52.86	+1	80709..84068	-	1119	53711367	-	BF0076	-	hypothetical protein
77	 46.72	0	84587..86185	+	532	53711368	-	BF0077	-	hypothetical protein
78	 46.77	0	86214..86972	+	252	53711369	-	BF0078	-	hypothetical protein
79	 58.77	+2	87145..87954	-	269	53711370	-	BF0079	-	putative metal ABC transporter ATP-binding protein
80	 55.95	+2	87975..88907	-	310	53711371	-	BF0080	-	putative zinc ABC transporter zinc-binding protein
81	 51.09	+1	88913..89689	-	258	53711372	-	BF0081	-	hypothetical protein
82	 51.36	+1	89698..90174	-	158	53711373	-	BF0082	-	putative integral membrane protein
83	 49.04	+1	90159..91151	-	330	53711374	-	BF0083	-	hypothetical protein
84	 51.92	+1	91151..92425	-	424	53711375	-	BF0084	-	phosphoribosylamine--glycine ligase
85	 49.17	+1	92447..94606	-	719	53711376	-	BF0085	-	dipeptidyl peptidase IV
86	 46.24	0	94742..96097	-	451	53711377	-	BF0086	-	putative N6-adenine-specific DNA methylase
87	 49.33	+1	96160..97059	-	299	53711378	-	BF0087	-	serine acetyltransferase
88	 40.32	0	97186..99216	+	676	53711379	-	BF0088	-	putative two-component system sensor histidine kinase
89	 39.95	0	99229..99984	+	251	53711380	-	BF0089	-	two-component system response regulator
90	 35.35	-1	100360..100755	-	131	53711381	-	BF0090	-	hypothetical protein
91	 42.95	0	101025..103832	-	935	53711382	-	BF0091	-	DNA polymerase I
92	 42.46	0	103918..104892	+	324	53711383	-	BF0092	-	octaprenyl-diphosphate synthase
93	 41.38	0	104902..105609	-	235	53711384	-	BF0093	-	hypothetical protein
94	 40.94	0	105618..105788	-	56	53711385	-	BF0094	-	hypothetical protein
95	 41.53	0	106010..106912	-	300	53711386	-	BF0095	-	putative deoxyribose-phosphate aldolase
96	 42.77	0	106899..107237	-	112	53711387	-	BF0096	-	hypothetical protein
97	 40.84	0	107237..107689	-	150	53711388	-	BF0097	-	D-tyrosyl-tRNA deacylase
98	 43.19	0	107735..109561	-	608	53711389	-	BF0098	-	excinuclease ABC subunit C
99	 42.83	0	109614..110150	-	178	53711390	-	BF0099	-	adenine phosphoribosyltransferase
100	 43.82	0	110201..112078	-	625	53711391	-	BF0100	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
43.19	MEAN

5.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.